CcUC07G144600 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC07G144600
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionAconitate hydratase
LocationCicolChr07: 30747073 .. 30748072 (-)
RNA-Seq ExpressionCcUC07G144600
SyntenyCcUC07G144600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGTCACTTATTTTCTCGAAATTTGGATCAGCACAGGGCATGGTCATATCCCACAGAGTCAATCTTGGCTGCGGACAAATTTTGGCATTGTTAATGCCGTGGGGGTTTGGTGTAGAATTGATGTCCACCTCAGTGGTTGACTCCCAAGTCTATTCTGCTGATTATAATTTTATTAAATGCACCAAAACATAAAATTCCTCTTAATTTTTTTGTTACGTTACTATCTTAGTTGCATCTTAACTTTTTTTATATTCGTGTAAAGATTTACATTTAAAAAAAAAAAAAATAAATATGTTAGTTTTAATTTATTCTTACATTCTTTAAAGAATAACATAAATGGCAACAGAGAGATTCATTCATACTGATACTACTTTGCTTCAACCAAATTGTAATCCCTATATCCCTTCTATCTTCTAACTTCTTTACTTTAATTATCTCTCTTTCCATACCAAAATTTTATTGCATGTTTTACCTTGATTTAGAGAATGATTTCCATTTTCAATATCACTTTCAAAAACTTGTTTCTTTCTTAGTAATCTAAAATCAATGATGTGAATATTATGTTTAGATGCAGCTTTGGCTGCATTTAACCATTGCTCTATTCCATTCTAACATGGGTAACATTTTATACGTATAATATTTTTCATTCTAAATATTGAAACGAGCAGACTAGACATTAAATTTAGTTGTTGTTGAGTTATGTTTTATGGTAACAGTTGAGACGATGAATATAGATGGGAAGAATAGGGTAGAGAGTCAGCTTCTGAGTTCAGCTCTGCCTAGAAGTGGTAACTATATTGACAACCCGCAGGAGGCAAAGAAGGTCGCGGTCCGTCGTTCCGGCTACCGGCCATGACGGCAGCTATGGAAACTGGTTATGAGAAAGTGTAGTTGTACTACTTTATCATGTACTGTGGCCGAGGAATTATGAATAAACAAGTGTAGTACTTTACTTTATCATATATATTGGTGTTTTGATGATCAATACCATGAG

mRNA sequence

ATGAAAAGGTCACTTATTTTCTCGAAATTTGGATCAGCACAGGGCATGGTCATATCCCACAGAGTCAATCTTGGCTGCGGACAAATTTTGGCATTGTTAATGCCGTGGGGGTTTGGTGTAGAATTGATGTCCACCTCAGTGGTTGACTCCCAAATGCAGCTTTGGCTGCATTTAACCATTGCTCTATTCCATTCTAACATGGTTGAGACGATGAATATAGATGGGAAGAATAGGGTAGAGAGTCAGCTTCTGAGTTCAGCTCTGCCTAGAAGTGGTAACTATATTGACAACCCGCAGGAGGCAAAGAAGGTCGCGGTCCGTCGTTCCGGCTACCGGCCATGACGGCAGCTATGGAAACTGGTTATGAGAAAGTGTAGTTGTACTACTTTATCATGTACTGTGGCCGAGGAATTATGAATAAACAAGTGTAGTACTTTACTTTATCATATATATTGGTGTTTTGATGATCAATACCATGAG

Coding sequence (CDS)

ATGAAAAGGTCACTTATTTTCTCGAAATTTGGATCAGCACAGGGCATGGTCATATCCCACAGAGTCAATCTTGGCTGCGGACAAATTTTGGCATTGTTAATGCCGTGGGGGTTTGGTGTAGAATTGATGTCCACCTCAGTGGTTGACTCCCAAATGCAGCTTTGGCTGCATTTAACCATTGCTCTATTCCATTCTAACATGGTTGAGACGATGAATATAGATGGGAAGAATAGGGTAGAGAGTCAGCTTCTGAGTTCAGCTCTGCCTAGAAGTGGTAACTATATTGACAACCCGCAGGAGGCAAAGAAGGTCGCGGTCCGTCGTTCCGGCTACCGGCCATGA

Protein sequence

MKRSLIFSKFGSAQGMVISHRVNLGCGQILALLMPWGFGVELMSTSVVDSQMQLWLHLTIALFHSNMVETMNIDGKNRVESQLLSSALPRSGNYIDNPQEAKKVAVRRSGYRP
Homology
[Close]
BLAST of CcUC07G144600 vs. NCBI nr
Match: KAA0044639.1 (Aconitate hydratase [Cucumis melo var. makuwa] >TYK16949.1 Aconitate hydratase [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 8.2e-09
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 69  ETMNIDGKNRVESQLLSSALPRSGNYIDNPQEAKKVAVRRSGYRP 114
           ETMN+DGKNR  S+LLS+ALPR GNYI+NP  A+K AVRRSGY+P
Sbjct: 17  ETMNMDGKNRDGSRLLSTALPRGGNYINNPHAAEKAAVRRSGYQP 61

[Close]
BLAST of CcUC07G144600 vs. NCBI nr
Match: KGN53132.1 (hypothetical protein Csa_014795 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 62  LFHSNMV----ETMNIDGKNRVESQLLSSALPRSGNYIDNPQEAKKVAVRRSGYRP 114
           LFHS  +    ETMN+DGKNR  S+ LSSALPR GNYI+ P  A+K AV R+GY+P
Sbjct: 27  LFHSTSLHADFETMNMDGKNRDGSRFLSSALPRGGNYINKPHAAEKAAVGRAGYQP 82

[Close]
BLAST of CcUC07G144600 vs. NCBI nr
Match: KAG6600180.1 (hypothetical protein SDJN03_05413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 6.5e-06
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 69  ETMNIDGKNRVESQLLSSALPRSGNYIDNPQEAKKVAVRRSGYRP 114
           ETMN+ G+    +QLLSSA PR GNYIDNPQ A K A++ SGY P
Sbjct: 37  ETMNMSGETAFGTQLLSSARPRGGNYIDNPQAANKAAIQTSGYHP 81

[Close]
BLAST of CcUC07G144600 vs. ExPASy TrEMBL
Match: A0A5A7TTS9 (Aconitate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00860 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.0e-09
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 69  ETMNIDGKNRVESQLLSSALPRSGNYIDNPQEAKKVAVRRSGYRP 114
           ETMN+DGKNR  S+LLS+ALPR GNYI+NP  A+K AVRRSGY+P
Sbjct: 17  ETMNMDGKNRDGSRLLSTALPRGGNYINNPHAAEKAAVRRSGYQP 61

[Close]
BLAST of CcUC07G144600 vs. ExPASy TrEMBL
Match: A0A0A0KXI8 (Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.5e-08
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 62  LFHSNMV----ETMNIDGKNRVESQLLSSALPRSGNYIDNPQEAKKVAVRRSGYRP 114
           LFHS  +    ETMN+DGKNR  S+ LSSALPR GNYI+ P  A+K AV R+GY+P
Sbjct: 27  LFHSTSLHADFETMNMDGKNRDGSRFLSSALPRGGNYINKPHAAEKAAVGRAGYQP 82

The following BLAST results are available for this feature:
BLAST of CcUC07G144600 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0044639.18.2e-0973.33Aconitate hydratase [Cucumis melo var. makuwa] >TYK16949.1 Aconitate hydratase [... [more]
KGN53132.11.5e-0760.71hypothetical protein Csa_014795 [Cucumis sativus][more]
KAG6600180.16.5e-0662.22hypothetical protein SDJN03_05413, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CcUC07G144600 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC07G144600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TTS94.0e-0973.33Aconitate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G... [more]
A0A0A0KXI87.5e-0860.71Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1[more]
BLAST of CcUC07G144600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC07G144600.1CcUC07G144600.1mRNA