CcUC07G143890 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC07G143890
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr07: 29928765 .. 29929010 (-)
RNA-Seq ExpressionCcUC07G143890
SyntenyCcUC07G143890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTGCCGGATTACAGTTAACGCAGCTGAGCACGAAAAGCACTTTCTTCGCATGACGTGTCGCTCTACTATTAGTCTGTCATTCACAAAGACGTTACTCCAGGTGTTGTCGAATCCTCCACCAGACACTGTTCGTACAGTGGCGGCCAACTTGCGGGACTGTACGGCGAGGGAGAGAATGGCTTGGCACGTGGCAGAAGGAGAGGGCGAGTGCATGAAGGATCCATGGGATGTAGTAATATAA

mRNA sequence

ATGGCCTGCCGGATTACAGTTAACGCAGCTGAGCACGAAAAGCACTTTCTTCGCATGACGTGTCGCTCTACTATTAGTCTGTCATTCACAAAGACGTTACTCCAGGTGTTGTCGAATCCTCCACCAGACACTGTTCGTACAGTGGCGGCCAACTTGCGGGACTGTACGGCGAGGGAGAGAATGGCTTGGCACGTGGCAGAAGGAGAGGGCGAGTGCATGAAGGATCCATGGGATGTAGTAATATAA

Coding sequence (CDS)

ATGGCCTGCCGGATTACAGTTAACGCAGCTGAGCACGAAAAGCACTTTCTTCGCATGACGTGTCGCTCTACTATTAGTCTGTCATTCACAAAGACGTTACTCCAGGTGTTGTCGAATCCTCCACCAGACACTGTTCGTACAGTGGCGGCCAACTTGCGGGACTGTACGGCGAGGGAGAGAATGGCTTGGCACGTGGCAGAAGGAGAGGGCGAGTGCATGAAGGATCCATGGGATGTAGTAATATAA

Protein sequence

MACRITVNAAEHEKHFLRMTCRSTISLSFTKTLLQVLSNPPPDTVRTVAANLRDCTARERMAWHVAEGEGECMKDPWDVVI
Homology
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BLAST of CcUC07G143890 vs. NCBI nr
Match: KAG6607075.1 (hypothetical protein SDJN03_00417, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-06
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 9   AAEHEKHFLRMTCRSTISLSFTKTLLQVLSNPPPDT 45
           AAEHEKHFL  TCRSTISLSFT+TLL+ LS PPP+T
Sbjct: 69  AAEHEKHFLLTTCRSTISLSFTQTLLRGLSTPPPET 104

The following BLAST results are available for this feature:
BLAST of CcUC07G143890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607075.16.1e-0680.56hypothetical protein SDJN03_00417, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CcUC07G143890 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC07G143890 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC07G143890 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC07G143890.1CcUC07G143890.1mRNA