CcUC07G143000 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC07G143000
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RAB GTPase homolog A5B
Location	CicolChr07: 29150175 .. 29152989 (+)
RNA-Seq Expression	CcUC07G143000
Synteny	CcUC07G143000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAGTTTGAAAGAATCGCTCGCTCCCTTCCTTCGTTCTCTCTTTAGTTTCAATGCCTACAAAATCCTCCATTGCAAGCTTCTTCCCCTTCATCAATGGCGGCCGACCAGAACCAGGGTGGCGATGTTCAAGATTGTTCTGATCGGCATCTCTGCTGTGAGGAAATCGAACCTCCTCTCGCGATTCTGTCGGAATGAGTTTGATAATAACTATAAGGCCTCAATCGACTTTAGTTTTAGACTCAAGTGGTGGAAATCGACGGCAAAGAGGTTAAGCCTCACGTCTGGAACTTTTTGTTTCTTCATCTTTTGTCTTTTAATTTAAAATTCATCCCATGTTTTATTTGCTCGATGGCATCTGAGAATTTCTCTTCCACTTGTGTTCCCATTGTTCCAGATTCCAAAACAGGGGTTTCTTGGATGATGGGATTAGGAGGAGGAATCCATTTTCAAGTTTCAGTTTTCATCGAATAAAATCAGTTTTTTCATTTAGGTGAAGCAGGGAATCGATGAACTAAAATGAGCAAATTCTGTTTGATTGCCTTTTTAGTGGTTGATTCCCACGCCCTCTATGTGTTTGTTGTAAGGCTTCAATCAAAGAAACAGATGTTTATTTTTTATTTAGATATATGAACTTATGCGATGAATTTTTTTTTCTCTCTCTTTGGTTACAGGGTAAAGGACATATAAAAAGGATGAAGATATTTCGGGTGCGAAATTTGCTCTGTATGATTGTTCTAAGCTTGAGGATATGAAGTAATTCTTCTCTTTTCTGGCTTTCATCAATTACTCTATAAGCTATGACATTTCTGCTCCTAAAAGTTGTTCCACATATATCTCAAAGAATCTTAACTAGAGATTTAACTACCCCTTCTCAAACCCATATAGGGAAAACGTTTATCTTGTTTGATGGGAAAGATGCCAACATAAACCGTCTTTGTAATGACAAGCAGTTCAAAGAGGCTATAGACATTCTCTGCAGGAAAAGATGTTTAAGAGAGGCGGTTCAATTGCTTTATCAAATTGAGAAACCCTCTGCTTCAATATACTCGACTTTATTACAATTTTGTCTTCAACAACGAGCTCTTGAGGAAGGCAAACAAGTCCATGACCACATCAAAGTCTCCGGGTTCATACCTGGAGTATACATTTCGAATCGTTTGCTTGATATGTATTCAAAATGCGGGAATTTGGTGGAAGCTGAGAAAGTCTTTGATGAAATGGTTTCAAGGGATTTGTGTTCCTGGAATATCATGATTTCTGGTTATGTCAAAGGAGCGCATTTTGAAAAAGCAAGAAATTTGTTTGACAAAATGCCTGTGAGAGATAACTTTTCTTGGACAGCAATTATATCTGGTTGTGTTCGACATAACCGTCCTGAAGAGGCGTTAGAGTTATATAGATTAATGCAAAAGCATGAGAACTCAAAATCCAACAAGTTTACTATATCTAGTGCACTTGCTGCTTCAGCAGCTATTCCAAATTTAAGCATGGGAAAGGAGATACATGGTCATATTATAAGAATGGGGTTGGATTCAGATGAGGTAGTTTGGAGCTCCCTATTGGATATGTATGGGAAATGTGGAAGTATAGAGGAAGGTAGATACATTTTTGACAAGATGGTGGAAAAAGATGTTGTTTCATGGACAACAATGATTGGTAGGTACTTCGAAGATGGGAGGAGAAACGAGGGATTTGCTTTGTTTAGACACTTAATGAATTCGAAAATCAAACCAAATGAGTTCACATTTGCTGGTGTCTTGAATGCTTGTGCTGATTACGCAGCAGAGGATTTGGGTAAGCAAATTCATGCCTTCATGATGCGTGTAGGATTCGACCCATATTCATTTGCAGCTAGCGCTCTTGTTCATATGTATTCTAAATGTGGGAACATTAAGAATGCCAAGAGTGTGTTCGAAGGAATGCCCCGACCTGATTTGGTTTCATGGACTTCATTAATTGTTGGTCATGCACAAAACGGTCAACATGACGAGGCCCTCCATTTCTATGAATTGCTGTGTAAATCAGGCACTAAACCAGATCATATTACTTTCGTTGGGGTTTTGTCTGCTTGTACTCATGCTGGGTTAGTCGATAAGGGACTTAAGTATTTTCACTCCATCAAGGAAAAGCATGGTTTGACTCATACCGCTGATCACTATGCTTGTATAATCGACTTATTGGCCCGTGCTGGTCGGTTTACAGAAGCTGAGAGCATAATTAACAAAATGCCTATGAAGCCAGATAAGTTTTTATGGGCTGCTTTACTTGGTGGATGTAGAATACATGGAAACATTGAACTAGCAGAAAGAGCAGCAAAATCTTTATTTGAAATAGAGCCTGAGAATCCAGCCACTTATATTACCCTAGCCAATATCTATGCCACTGCTGGTAGGTGGGCTGAAGAAGCAAATATCAGAAAGACCATGAATAGTAGGGGAATAGTGAAGAAGCCTGGTTTGAGTTGGATAGAGATCAAGAGAGAGGTTCATGCGTTCACCGTCGGAGATAACTCGCATCCGAGATCAAAGGAAATACTCGAGTATTTGGACGAGCTCTCGAAGAGAATGAAAGAAGTTGGTTATGTACCTGATACAAACTTTGTGCTACATGATGTGGAATTGGAACAGAAAGAACAGAACCTTTCTTACCATAGTGAGAAACTTGCAGTTGCATTTGGAATAATTTCAACCCCTACAGGTACTCCAATCAAGGTTTTCAAGAATCTAAGAACTTGTGTAGACTGTCATAGTGCAATTAAGTTTATTTCCAAGATCACAAGGAGAAAAATAATTGTGAGAGATTCAAATAGGTTT

mRNA sequence

ATCAGTTTGAAAGAATCGCTCGCTCCCTTCCTTCGTTCTCTCTTTAGTTTCAATGCCTACAAAATCCTCCATTGCAAGCTTCTTCCCCTTCATCAATGGCGGCCGACCAGAACCAGGGTGGCGATGTTCAAGATTGTTCTGATCGGCATCTCTGCTGTGAGGAAATCGAACCTCCTCTCGCGATTCTGTCGGAATGAGTTTGATAATAACTATAAGGCCTCAATCGACTTTAGTTTTAGACTCAAGTGGTGGAAATCGACGGCAAAGAGATTCCAAAACAGGGGTTTCTTGGATGATGGGATTAGGAGGAGGAATCCATTTTCAAGTTTCAGTTTTCATCGAATAAAATCAGGTAAAGGACATATAAAAAGGATGAAGATATTTCGGGTGCGAAATTTGCTCTGTATGATTGTTCTAAGCTTGAGGATATGAAGGAAAACGTTTATCTTGTTTGATGGGAAAGATGCCAACATAAACCGTCTTTGTAATGACAAGCAGTTCAAAGAGGCTATAGACATTCTCTGCAGGAAAAGATGTTTAAGAGAGGCGGTTCAATTGCTTTATCAAATTGAGAAACCCTCTGCTTCAATATACTCGACTTTATTACAATTTTGTCTTCAACAACGAGCTCTTGAGGAAGGCAAACAAGTCCATGACCACATCAAAGTCTCCGGGTTCATACCTGGAGTATACATTTCGAATCGTTTGCTTGATATGTATTCAAAATGCGGGAATTTGGTGGAAGCTGAGAAAGTCTTTGATGAAATGGTTTCAAGGGATTTGTGTTCCTGGAATATCATGATTTCTGGTTATGTCAAAGGAGCGCATTTTGAAAAAGCAAGAAATTTGTTTGACAAAATGCCTGTGAGAGATAACTTTTCTTGGACAGCAATTATATCTGGTTGTGTTCGACATAACCGTCCTGAAGAGGCGTTAGAGTTATATAGATTAATGCAAAAGCATGAGAACTCAAAATCCAACAAGTTTACTATATCTAGTGCACTTGCTGCTTCAGCAGCTATTCCAAATTTAAGCATGGGAAAGGAGATACATGGTCATATTATAAGAATGGGGTTGGATTCAGATGAGGTAGTTTGGAGCTCCCTATTGGATATGTATGGGAAATGTGGAAGTATAGAGGAAGGTAGATACATTTTTGACAAGATGGTGGAAAAAGATGTTGTTTCATGGACAACAATGATTGGTAGGTACTTCGAAGATGGGAGGAGAAACGAGGGATTTGCTTTGTTTAGACACTTAATGAATTCGAAAATCAAACCAAATGAGTTCACATTTGCTGGTGTCTTGAATGCTTGTGCTGATTACGCAGCAGAGGATTTGGGTAAGCAAATTCATGCCTTCATGATGCGTGTAGGATTCGACCCATATTCATTTGCAGCTAGCGCTCTTGTTCATATGTATTCTAAATGTGGGAACATTAAGAATGCCAAGAGTGTGTTCGAAGGAATGCCCCGACCTGATTTGGTTTCATGGACTTCATTAATTGTTGGTCATGCACAAAACGGTCAACATGACGAGGCCCTCCATTTCTATGAATTGCTGTGTAAATCAGGCACTAAACCAGATCATATTACTTTCGTTGGGGTTTTGTCTGCTTGTACTCATGCTGGGTTAGTCGATAAGGGACTTAAGTATTTTCACTCCATCAAGGAAAAGCATGGTTTGACTCATACCGCTGATCACTATGCTTGTATAATCGACTTATTGGCCCGTGCTGGTCGGTTTACAGAAGCTGAGAGCATAATTAACAAAATGCCTATGAAGCCAGATAAGTTTTTATGGGCTGCTTTACTTGGTGGATGTAGAATACATGGAAACATTGAACTAGCAGAAAGAGCAGCAAAATCTTTATTTGAAATAGAGCCTGAGAATCCAGCCACTTATATTACCCTAGCCAATATCTATGCCACTGCTGGTAGGTGGGCTGAAGAAGCAAATATCAGAAAGACCATGAATAGTAGGGGAATAGTGAAGAAGCCTGGTTTGAGTTGGATAGAGATCAAGAGAGAGGTTCATGCGTTCACCGTCGGAGATAACTCGCATCCGAGATCAAAGGAAATACTCGAGTATTTGGACGAGCTCTCGAAGAGAATGAAAGAAGTTGGTTATGTACCTGATACAAACTTTGTGCTACATGATGTGGAATTGGAACAGAAAGAACAGAACCTTTCTTACCATAGTGAGAAACTTGCAGTTGCATTTGGAATAATTTCAACCCCTACAGGTACTCCAATCAAGGTTTTCAAGAATCTAAGAACTTGTGTAGACTGTCATAGTGCAATTAAGTTTATTTCCAAGATCACAAGGAGAAAAATAATTGTGAGAGATTCAAATAGGTTT

Coding sequence (CDS)

ATCAGTTTGAAAGAATCGCTCGCTCCCTTCCTTCGTTCTCTCTTTAGTTTCAATGCCTACAAAATCCTCCATTGCAAGCTTCTTCCCCTTCATCAATGGCGGCCGACCAGAACCAGGGTGGCGATGTTCAAGATTGTTCTGATCGGCATCTCTGCTGTGAGGAAATCGAACCTCCTCTCGCGATTCTGTCGGAATGAGTTTGATAATAACTATAAGGCCTCAATCGACTTTAGTTTTAGACTCAAGTGGTGGAAATCGACGGCAAAGAGATTCCAAAACAGGGGTTTCTTGGATGATGGGATTAGGAGGAGGAATCCATTTTCAAGTTTCAGTTTTCATCGAATAAAATCAGGTAAAGGACATATAAAAAGGATGAAGATATTTCGGGTGCGAAATTTGCTCTGTATGATTGTTCTAAGCTTGAGGATATGA

Protein sequence

ISLKESLAPFLRSLFSFNAYKILHCKLLPLHQWRPTRTRVAMFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFRLKWWKSTAKRFQNRGFLDDGIRRRNPFSSFSFHRIKSGKGHIKRMKIFRVRNLLCMIVLSLRI

Homology

[Close]

BLAST of CcUC07G143000 vs. NCBI nr
Match: KGN53014.1 (hypothetical protein Csa_015426 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-07
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 42  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFRLKWWKSTAKR-----FQNRGF 101
           MF +VLI  S + KSNLL  FCRNE D NYKASI   F+++  K   K      F++RGF
Sbjct: 1   MFNLVLIDNSVLGKSNLLLPFCRNEIDVNYKASIGVEFQIQVLKINGKEVKSLIFRSRGF 60

Query: 102 LDDGIRRRNP 107
           LDDG   RNP
Sbjct: 61  LDDGFWWRNP 70

[Close]

BLAST of CcUC07G143000 vs. NCBI nr
Match: KAA3459257.1 (ras-related protein RABA5e-like [Gossypium australe])

HSP 1 Score: 58.2 bits (139), Expect = 6.9e-05
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFRLK 83
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I   F+++
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQIQ 54

[Close]

BLAST of CcUC07G143000 vs. NCBI nr
Match: XP_022771555.1 (ras-related protein RABA5b [Durio zibethinus])

HSP 1 Score: 57.8 bits (138), Expect = 9.1e-05
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 37 RTRVAMFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFR 81
          R+   +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I   F+
Sbjct: 9  RSEEYLFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQ 52

[Close]

BLAST of CcUC07G143000 vs. NCBI nr
Match: KAE8701375.1 (Ras-related protein RABA5a [Hibiscus syriacus])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFRLKWWKSTAK 90
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+    FR +  K   K
Sbjct: 26 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATTGVEFRTQCVKIDGK 73

[Close]

BLAST of CcUC07G143000 vs. NCBI nr
Match: XP_039021211.1 (ras-related protein RABA5c-like [Hibiscus syriacus] >KAE8685291.1 Ras-related protein RABA5a [Hibiscus syriacus])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 40 VAMFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFR 81
          V +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I   F+
Sbjct: 12 VYLFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQ 52

[Close]

BLAST of CcUC07G143000 vs. ExPASy Swiss-Prot
Match: Q9SRS5 (Ras-related protein RABA5b OS=Arabidopsis thaliana OX=3702 GN=RABA5B PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.0e-06
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFR 81
          +FKIVLIG SAV KSNLLSRF R+EFD N KA+I   F+
Sbjct: 12 LFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQ 50

[Close]

BLAST of CcUC07G143000 vs. ExPASy Swiss-Prot
Match: P19892 (Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.2e-05
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFR 81
          +FKIV+IG SAV KSNLLSR+ RNEF  N KA+I   F+
Sbjct: 12 LFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQ 50

[Close]

BLAST of CcUC07G143000 vs. ExPASy Swiss-Prot
Match: P28187 (Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.5e-05
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFR 81
          +FKIV+IG SAV KSNLL+R+ RNEF+ N KA+I   F+
Sbjct: 12 LFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQ 50

[Close]

BLAST of CcUC07G143000 vs. ExPASy Swiss-Prot
Match: Q9SIP0 (Ras-related protein RABA5d OS=Arabidopsis thaliana OX=3702 GN=RABA5D PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.4e-05
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFR 81
          +FKIV+IG SAV KSNLLSR+ RNEF+ + KA+I   F+
Sbjct: 12 LFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQ 50

[Close]

BLAST of CcUC07G143000 vs. ExPASy Swiss-Prot
Match: Q550H6 (Ras-related protein Rab-11C OS=Dictyostelium discoideum OX=44689 GN=rab11C PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFRLK 83
          +FKIV+IG SAV KSNLL+RF RNEF    KA+I   F  K
Sbjct: 10 LFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTK 50

[Close]

BLAST of CcUC07G143000 vs. ExPASy TrEMBL
Match: A0A0A0KVZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011610 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 42  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFRLKWWKSTAKR-----FQNRGF 101
           MF +VLI  S + KSNLL  FCRNE D NYKASI   F+++  K   K      F++RGF
Sbjct: 1   MFNLVLIDNSVLGKSNLLLPFCRNEIDVNYKASIGVEFQIQVLKINGKEVKSLIFRSRGF 60

Query: 102 LDDGIRRRNP 107
           LDDG   RNP
Sbjct: 61  LDDGFWWRNP 70

[Close]

BLAST of CcUC07G143000 vs. ExPASy TrEMBL
Match: A0A5B6UQN3 (Ras-related protein RABA5e-like OS=Gossypium australe OX=47621 GN=EPI10_013766 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.4e-05
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFRLK 83
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I   F+++
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQIQ 54

[Close]

BLAST of CcUC07G143000 vs. ExPASy TrEMBL
Match: A0A6P6B3C6 (ras-related protein RABA5b OS=Durio zibethinus OX=66656 GN=LOC111314444 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.4e-05
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 37 RTRVAMFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFR 81
          R+   +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I   F+
Sbjct: 9  RSEEYLFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQ 52

[Close]

BLAST of CcUC07G143000 vs. ExPASy TrEMBL
Match: A0A6A2Z080 (Ras-related protein RABA5a OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111099pilonHSYRG00149 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.7e-05
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 40 VAMFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFR 81
          V +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I   F+
Sbjct: 12 VYLFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQ 52

[Close]

BLAST of CcUC07G143000 vs. ExPASy TrEMBL
Match: A0A6A3ADZ4 (Ras-related protein RABA5a OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110548pilonHSYRG00879 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.7e-05
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFRLKWWKSTAK 90
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+    FR +  K   K
Sbjct: 26 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATTGVEFRTQCVKIDGK 73

[Close]

BLAST of CcUC07G143000 vs. TAIR 10
Match: AT3G07410.1 (RAB GTPase homolog A5B )

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-07
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFR 81
          +FKIVLIG SAV KSNLLSRF R+EFD N KA+I   F+
Sbjct: 12 LFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQ 50

[Close]

BLAST of CcUC07G143000 vs. TAIR 10
Match: AT1G05810.1 (RAB GTPase homolog A5E )

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-06
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFR 81
          +FKIV+IG SAV KSNLLSR+ RNEF  N KA+I   F+
Sbjct: 55 LFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQ 93

[Close]

BLAST of CcUC07G143000 vs. TAIR 10
Match: AT2G43130.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 3.9e-06
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFR 81
          +FKIV+IG SAV KSNLL+R+ RNEF+ N KA+I   F+
Sbjct: 12 LFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQ 50

[Close]

BLAST of CcUC07G143000 vs. TAIR 10
Match: AT2G31680.1 (RAB GTPase homolog A5D )

HSP 1 Score: 48.1 bits (113), Expect = 6.7e-06
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFR 81
          +FKIV+IG SAV KSNLLSR+ RNEF+ + KA+I   F+
Sbjct: 12 LFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQ 50

[Close]

BLAST of CcUC07G143000 vs. TAIR 10
Match: AT1G06400.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.5e-05
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 42 MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFRLKWWKSTAK 90
          +FK+VLIG S V KSNLLSRF +NEF+   K++I   F  K  K   K
Sbjct: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGK 60

The following BLAST results are available for this feature:

BLAST of CcUC07G143000 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53014.1	3.3e-07	52.86	hypothetical protein Csa_015426 [Cucumis sativus]	[more]
KAA3459257.1	6.9e-05	70.73	ras-related protein RABA5e-like [Gossypium australe]	[more]
XP_022771555.1	9.1e-05	68.18	ras-related protein RABA5b [Durio zibethinus]	[more]
KAE8701375.1	1.2e-04	64.58	Ras-related protein RABA5a [Hibiscus syriacus]	[more]
XP_039021211.1	1.2e-04	73.17	ras-related protein RABA5c-like [Hibiscus syriacus] >KAE8685291.1 Ras-related pr...	[more]

BLAST of CcUC07G143000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRS5	5.0e-06	69.23	Ras-related protein RABA5b OS=Arabidopsis thaliana OX=3702 GN=RABA5B PE=1 SV=1	[more]
P19892	4.2e-05	64.10	Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1	[more]
P28187	5.5e-05	61.54	Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1	[more]
Q9SIP0	9.4e-05	61.54	Ras-related protein RABA5d OS=Arabidopsis thaliana OX=3702 GN=RABA5D PE=1 SV=1	[more]
Q550H6	1.2e-04	60.98	Ras-related protein Rab-11C OS=Dictyostelium discoideum OX=44689 GN=rab11C PE=1 ...	[more]

BLAST of CcUC07G143000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVZ8	1.6e-07	52.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011610 PE=4 SV=1	[more]
A0A5B6UQN3	3.4e-05	70.73	Ras-related protein RABA5e-like OS=Gossypium australe OX=47621 GN=EPI10_013766 P...	[more]
A0A6P6B3C6	4.4e-05	68.18	ras-related protein RABA5b OS=Durio zibethinus OX=66656 GN=LOC111314444 PE=4 SV=...	[more]
A0A6A2Z080	5.7e-05	73.17	Ras-related protein RABA5a OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111099pi...	[more]
A0A6A3ADZ4	5.7e-05	64.58	Ras-related protein RABA5a OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110548pi...	[more]

BLAST of CcUC07G143000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07410.1	3.6e-07	69.23	RAB GTPase homolog A5B	[more]
AT1G05810.1	3.0e-06	64.10	RAB GTPase homolog A5E	[more]
AT2G43130.1	3.9e-06	61.54	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G31680.1	6.7e-06	61.54	RAB GTPase homolog A5D	[more]
AT1G06400.1	2.5e-05	52.08	Ras-related small GTP-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 66..82 score: 24.39 coord: 43..64 score: 44.29
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 34..95 e-value: 1.1E-7 score: 33.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 42..85
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 44..83 e-value: 3.8E-6 score: 26.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC07G143000.1	CcUC07G143000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding