![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CcUC07G143000 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCAGTTTGAAAGAATCGCTCGCTCCCTTCCTTCGTTCTCTCTTTAGTTTCAATGCCTACAAAATCCTCCATTGCAAGCTTCTTCCCCTTCATCAATGGCGGCCGACCAGAACCAGGGTGGCGATGTTCAAGATTGTTCTGATCGGCATCTCTGCTGTGAGGAAATCGAACCTCCTCTCGCGATTCTGTCGGAATGAGTTTGATAATAACTATAAGGCCTCAATCGACTTTAGTTTTAGACTCAAGTGGTGGAAATCGACGGCAAAGAGGTTAAGCCTCACGTCTGGAACTTTTTGTTTCTTCATCTTTTGTCTTTTAATTTAAAATTCATCCCATGTTTTATTTGCTCGATGGCATCTGAGAATTTCTCTTCCACTTGTGTTCCCATTGTTCCAGATTCCAAAACAGGGGTTTCTTGGATGATGGGATTAGGAGGAGGAATCCATTTTCAAGTTTCAGTTTTCATCGAATAAAATCAGTTTTTTCATTTAGGTGAAGCAGGGAATCGATGAACTAAAATGAGCAAATTCTGTTTGATTGCCTTTTTAGTGGTTGATTCCCACGCCCTCTATGTGTTTGTTGTAAGGCTTCAATCAAAGAAACAGATGTTTATTTTTTATTTAGATATATGAACTTATGCGATGAATTTTTTTTTCTCTCTCTTTGGTTACAGGGTAAAGGACATATAAAAAGGATGAAGATATTTCGGGTGCGAAATTTGCTCTGTATGATTGTTCTAAGCTTGAGGATATGAAGTAATTCTTCTCTTTTCTGGCTTTCATCAATTACTCTATAAGCTATGACATTTCTGCTCCTAAAAGTTGTTCCACATATATCTCAAAGAATCTTAACTAGAGATTTAACTACCCCTTCTCAAACCCATATAGGGAAAACGTTTATCTTGTTTGATGGGAAAGATGCCAACATAAACCGTCTTTGTAATGACAAGCAGTTCAAAGAGGCTATAGACATTCTCTGCAGGAAAAGATGTTTAAGAGAGGCGGTTCAATTGCTTTATCAAATTGAGAAACCCTCTGCTTCAATATACTCGACTTTATTACAATTTTGTCTTCAACAACGAGCTCTTGAGGAAGGCAAACAAGTCCATGACCACATCAAAGTCTCCGGGTTCATACCTGGAGTATACATTTCGAATCGTTTGCTTGATATGTATTCAAAATGCGGGAATTTGGTGGAAGCTGAGAAAGTCTTTGATGAAATGGTTTCAAGGGATTTGTGTTCCTGGAATATCATGATTTCTGGTTATGTCAAAGGAGCGCATTTTGAAAAAGCAAGAAATTTGTTTGACAAAATGCCTGTGAGAGATAACTTTTCTTGGACAGCAATTATATCTGGTTGTGTTCGACATAACCGTCCTGAAGAGGCGTTAGAGTTATATAGATTAATGCAAAAGCATGAGAACTCAAAATCCAACAAGTTTACTATATCTAGTGCACTTGCTGCTTCAGCAGCTATTCCAAATTTAAGCATGGGAAAGGAGATACATGGTCATATTATAAGAATGGGGTTGGATTCAGATGAGGTAGTTTGGAGCTCCCTATTGGATATGTATGGGAAATGTGGAAGTATAGAGGAAGGTAGATACATTTTTGACAAGATGGTGGAAAAAGATGTTGTTTCATGGACAACAATGATTGGTAGGTACTTCGAAGATGGGAGGAGAAACGAGGGATTTGCTTTGTTTAGACACTTAATGAATTCGAAAATCAAACCAAATGAGTTCACATTTGCTGGTGTCTTGAATGCTTGTGCTGATTACGCAGCAGAGGATTTGGGTAAGCAAATTCATGCCTTCATGATGCGTGTAGGATTCGACCCATATTCATTTGCAGCTAGCGCTCTTGTTCATATGTATTCTAAATGTGGGAACATTAAGAATGCCAAGAGTGTGTTCGAAGGAATGCCCCGACCTGATTTGGTTTCATGGACTTCATTAATTGTTGGTCATGCACAAAACGGTCAACATGACGAGGCCCTCCATTTCTATGAATTGCTGTGTAAATCAGGCACTAAACCAGATCATATTACTTTCGTTGGGGTTTTGTCTGCTTGTACTCATGCTGGGTTAGTCGATAAGGGACTTAAGTATTTTCACTCCATCAAGGAAAAGCATGGTTTGACTCATACCGCTGATCACTATGCTTGTATAATCGACTTATTGGCCCGTGCTGGTCGGTTTACAGAAGCTGAGAGCATAATTAACAAAATGCCTATGAAGCCAGATAAGTTTTTATGGGCTGCTTTACTTGGTGGATGTAGAATACATGGAAACATTGAACTAGCAGAAAGAGCAGCAAAATCTTTATTTGAAATAGAGCCTGAGAATCCAGCCACTTATATTACCCTAGCCAATATCTATGCCACTGCTGGTAGGTGGGCTGAAGAAGCAAATATCAGAAAGACCATGAATAGTAGGGGAATAGTGAAGAAGCCTGGTTTGAGTTGGATAGAGATCAAGAGAGAGGTTCATGCGTTCACCGTCGGAGATAACTCGCATCCGAGATCAAAGGAAATACTCGAGTATTTGGACGAGCTCTCGAAGAGAATGAAAGAAGTTGGTTATGTACCTGATACAAACTTTGTGCTACATGATGTGGAATTGGAACAGAAAGAACAGAACCTTTCTTACCATAGTGAGAAACTTGCAGTTGCATTTGGAATAATTTCAACCCCTACAGGTACTCCAATCAAGGTTTTCAAGAATCTAAGAACTTGTGTAGACTGTCATAGTGCAATTAAGTTTATTTCCAAGATCACAAGGAGAAAAATAATTGTGAGAGATTCAAATAGGTTT ATCAGTTTGAAAGAATCGCTCGCTCCCTTCCTTCGTTCTCTCTTTAGTTTCAATGCCTACAAAATCCTCCATTGCAAGCTTCTTCCCCTTCATCAATGGCGGCCGACCAGAACCAGGGTGGCGATGTTCAAGATTGTTCTGATCGGCATCTCTGCTGTGAGGAAATCGAACCTCCTCTCGCGATTCTGTCGGAATGAGTTTGATAATAACTATAAGGCCTCAATCGACTTTAGTTTTAGACTCAAGTGGTGGAAATCGACGGCAAAGAGATTCCAAAACAGGGGTTTCTTGGATGATGGGATTAGGAGGAGGAATCCATTTTCAAGTTTCAGTTTTCATCGAATAAAATCAGGTAAAGGACATATAAAAAGGATGAAGATATTTCGGGTGCGAAATTTGCTCTGTATGATTGTTCTAAGCTTGAGGATATGAAGGAAAACGTTTATCTTGTTTGATGGGAAAGATGCCAACATAAACCGTCTTTGTAATGACAAGCAGTTCAAAGAGGCTATAGACATTCTCTGCAGGAAAAGATGTTTAAGAGAGGCGGTTCAATTGCTTTATCAAATTGAGAAACCCTCTGCTTCAATATACTCGACTTTATTACAATTTTGTCTTCAACAACGAGCTCTTGAGGAAGGCAAACAAGTCCATGACCACATCAAAGTCTCCGGGTTCATACCTGGAGTATACATTTCGAATCGTTTGCTTGATATGTATTCAAAATGCGGGAATTTGGTGGAAGCTGAGAAAGTCTTTGATGAAATGGTTTCAAGGGATTTGTGTTCCTGGAATATCATGATTTCTGGTTATGTCAAAGGAGCGCATTTTGAAAAAGCAAGAAATTTGTTTGACAAAATGCCTGTGAGAGATAACTTTTCTTGGACAGCAATTATATCTGGTTGTGTTCGACATAACCGTCCTGAAGAGGCGTTAGAGTTATATAGATTAATGCAAAAGCATGAGAACTCAAAATCCAACAAGTTTACTATATCTAGTGCACTTGCTGCTTCAGCAGCTATTCCAAATTTAAGCATGGGAAAGGAGATACATGGTCATATTATAAGAATGGGGTTGGATTCAGATGAGGTAGTTTGGAGCTCCCTATTGGATATGTATGGGAAATGTGGAAGTATAGAGGAAGGTAGATACATTTTTGACAAGATGGTGGAAAAAGATGTTGTTTCATGGACAACAATGATTGGTAGGTACTTCGAAGATGGGAGGAGAAACGAGGGATTTGCTTTGTTTAGACACTTAATGAATTCGAAAATCAAACCAAATGAGTTCACATTTGCTGGTGTCTTGAATGCTTGTGCTGATTACGCAGCAGAGGATTTGGGTAAGCAAATTCATGCCTTCATGATGCGTGTAGGATTCGACCCATATTCATTTGCAGCTAGCGCTCTTGTTCATATGTATTCTAAATGTGGGAACATTAAGAATGCCAAGAGTGTGTTCGAAGGAATGCCCCGACCTGATTTGGTTTCATGGACTTCATTAATTGTTGGTCATGCACAAAACGGTCAACATGACGAGGCCCTCCATTTCTATGAATTGCTGTGTAAATCAGGCACTAAACCAGATCATATTACTTTCGTTGGGGTTTTGTCTGCTTGTACTCATGCTGGGTTAGTCGATAAGGGACTTAAGTATTTTCACTCCATCAAGGAAAAGCATGGTTTGACTCATACCGCTGATCACTATGCTTGTATAATCGACTTATTGGCCCGTGCTGGTCGGTTTACAGAAGCTGAGAGCATAATTAACAAAATGCCTATGAAGCCAGATAAGTTTTTATGGGCTGCTTTACTTGGTGGATGTAGAATACATGGAAACATTGAACTAGCAGAAAGAGCAGCAAAATCTTTATTTGAAATAGAGCCTGAGAATCCAGCCACTTATATTACCCTAGCCAATATCTATGCCACTGCTGGTAGGTGGGCTGAAGAAGCAAATATCAGAAAGACCATGAATAGTAGGGGAATAGTGAAGAAGCCTGGTTTGAGTTGGATAGAGATCAAGAGAGAGGTTCATGCGTTCACCGTCGGAGATAACTCGCATCCGAGATCAAAGGAAATACTCGAGTATTTGGACGAGCTCTCGAAGAGAATGAAAGAAGTTGGTTATGTACCTGATACAAACTTTGTGCTACATGATGTGGAATTGGAACAGAAAGAACAGAACCTTTCTTACCATAGTGAGAAACTTGCAGTTGCATTTGGAATAATTTCAACCCCTACAGGTACTCCAATCAAGGTTTTCAAGAATCTAAGAACTTGTGTAGACTGTCATAGTGCAATTAAGTTTATTTCCAAGATCACAAGGAGAAAAATAATTGTGAGAGATTCAAATAGGTTT ATCAGTTTGAAAGAATCGCTCGCTCCCTTCCTTCGTTCTCTCTTTAGTTTCAATGCCTACAAAATCCTCCATTGCAAGCTTCTTCCCCTTCATCAATGGCGGCCGACCAGAACCAGGGTGGCGATGTTCAAGATTGTTCTGATCGGCATCTCTGCTGTGAGGAAATCGAACCTCCTCTCGCGATTCTGTCGGAATGAGTTTGATAATAACTATAAGGCCTCAATCGACTTTAGTTTTAGACTCAAGTGGTGGAAATCGACGGCAAAGAGATTCCAAAACAGGGGTTTCTTGGATGATGGGATTAGGAGGAGGAATCCATTTTCAAGTTTCAGTTTTCATCGAATAAAATCAGGTAAAGGACATATAAAAAGGATGAAGATATTTCGGGTGCGAAATTTGCTCTGTATGATTGTTCTAAGCTTGAGGATATGA ISLKESLAPFLRSLFSFNAYKILHCKLLPLHQWRPTRTRVAMFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFSFRLKWWKSTAKRFQNRGFLDDGIRRRNPFSSFSFHRIKSGKGHIKRMKIFRVRNLLCMIVLSLRI Homology
BLAST of CcUC07G143000 vs. NCBI nr
Match: KGN53014.1 (hypothetical protein Csa_015426 [Cucumis sativus]) HSP 1 Score: 65.9 bits (159), Expect = 3.3e-07 Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 0
BLAST of CcUC07G143000 vs. NCBI nr
Match: KAA3459257.1 (ras-related protein RABA5e-like [Gossypium australe]) HSP 1 Score: 58.2 bits (139), Expect = 6.9e-05 Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0
BLAST of CcUC07G143000 vs. NCBI nr
Match: XP_022771555.1 (ras-related protein RABA5b [Durio zibethinus]) HSP 1 Score: 57.8 bits (138), Expect = 9.1e-05 Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0
BLAST of CcUC07G143000 vs. NCBI nr
Match: KAE8701375.1 (Ras-related protein RABA5a [Hibiscus syriacus]) HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04 Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0
BLAST of CcUC07G143000 vs. NCBI nr
Match: XP_039021211.1 (ras-related protein RABA5c-like [Hibiscus syriacus] >KAE8685291.1 Ras-related protein RABA5a [Hibiscus syriacus]) HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04 Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0
BLAST of CcUC07G143000 vs. ExPASy Swiss-Prot
Match: Q9SRS5 (Ras-related protein RABA5b OS=Arabidopsis thaliana OX=3702 GN=RABA5B PE=1 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 5.0e-06 Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0
BLAST of CcUC07G143000 vs. ExPASy Swiss-Prot
Match: P19892 (Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 4.2e-05 Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0
BLAST of CcUC07G143000 vs. ExPASy Swiss-Prot
Match: P28187 (Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 5.5e-05 Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 0
BLAST of CcUC07G143000 vs. ExPASy Swiss-Prot
Match: Q9SIP0 (Ras-related protein RABA5d OS=Arabidopsis thaliana OX=3702 GN=RABA5D PE=1 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 9.4e-05 Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 0
BLAST of CcUC07G143000 vs. ExPASy Swiss-Prot
Match: Q550H6 (Ras-related protein Rab-11C OS=Dictyostelium discoideum OX=44689 GN=rab11C PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04 Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 0
BLAST of CcUC07G143000 vs. ExPASy TrEMBL
Match: A0A0A0KVZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011610 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07 Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 0
BLAST of CcUC07G143000 vs. ExPASy TrEMBL
Match: A0A5B6UQN3 (Ras-related protein RABA5e-like OS=Gossypium australe OX=47621 GN=EPI10_013766 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 3.4e-05 Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0
BLAST of CcUC07G143000 vs. ExPASy TrEMBL
Match: A0A6P6B3C6 (ras-related protein RABA5b OS=Durio zibethinus OX=66656 GN=LOC111314444 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 4.4e-05 Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0
BLAST of CcUC07G143000 vs. ExPASy TrEMBL
Match: A0A6A2Z080 (Ras-related protein RABA5a OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111099pilonHSYRG00149 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 5.7e-05 Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0
BLAST of CcUC07G143000 vs. ExPASy TrEMBL
Match: A0A6A3ADZ4 (Ras-related protein RABA5a OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110548pilonHSYRG00879 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 5.7e-05 Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0
BLAST of CcUC07G143000 vs. TAIR 10
Match: AT3G07410.1 (RAB GTPase homolog A5B ) HSP 1 Score: 52.4 bits (124), Expect = 3.6e-07 Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0
BLAST of CcUC07G143000 vs. TAIR 10
Match: AT1G05810.1 (RAB GTPase homolog A5E ) HSP 1 Score: 49.3 bits (116), Expect = 3.0e-06 Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0
BLAST of CcUC07G143000 vs. TAIR 10
Match: AT2G43130.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein ) HSP 1 Score: 48.9 bits (115), Expect = 3.9e-06 Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 0
BLAST of CcUC07G143000 vs. TAIR 10
Match: AT2G31680.1 (RAB GTPase homolog A5D ) HSP 1 Score: 48.1 bits (113), Expect = 6.7e-06 Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 0
BLAST of CcUC07G143000 vs. TAIR 10
Match: AT1G06400.1 (Ras-related small GTP-binding family protein ) HSP 1 Score: 46.2 bits (108), Expect = 2.5e-05 Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|