CcUC07G135270 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC07G135270
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ribosomal protein
Location	CicolChr07: 16272138 .. 16272688 (+)
RNA-Seq Expression	CcUC07G135270
Synteny	CcUC07G135270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAACTTCAGAGAGATGCTTTGAGAGAAGCTATTTCATCTATCTTTGCTGATAGCAGGGAAAAGAACCACAACTTTACTGAGACCATTGAACTTCAGATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTTAGTGGATCAGTGAAGTTGCCCCATATCCCTCACCCTAAGATGAAGATTTGCATGCTTGGAGATGCCTCTCACATTGAAGAGGCAGAGAAAATCAGTTTGGATTATATGGACGTTGAAGGTTTGAAGAAGCTAAACAAAAACTAGAAGTTGGTGAAGAAACTTGCCAAGAAGTATCATGCCTTTTTAGCATCTGAAGCTATTATAAGCAAATTCCCCGTCTCCTGGGCCCTGGGCTCAACAAAGGGCCCAACAAGGCAGGAAAGTTCCCTACCCTGGTCACTCACCAAGAATCTCTCGAATCTAAAGTAAATGAGACTAAGTCAATGGTTAAGTCCCAATTGAAGAAGGTTCTTTGCATGGGTGCCACCATAGGCAATGTTGCCATGGAAGAGAAACAAGTTTTATAG

mRNA sequence

ATGAGCAAACTTCAGAGAGATGCTTTGAGAGAAGCTATTTCATCTATCTTTGCTGATAGCAGGGAAAAGAACCACAACTTTACTGAGACCATTGAACTTCAGATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTTAGTGGATCAGTGAAGTTGCCCCATATCCCTCACCCTAAGATGAAGATTTGCATGCTTGGAGATGCCTCTCACATTGAAGAGGCAGAGAAAATCAGTTTGGATTATATGGACGTTGAAGGGCCCAACAAGGCAGGAAAGTTCCCTACCCTGGTCACTCACCAAGAATCTCTCGAATCTAAAGTAAATGAGACTAAGTCAATGGTTAAGTCCCAATTGAAGAAGGTTCTTTGCATGGGTGCCACCATAGGCAATGTTGCCATGGAAGAGAAACAAGTTTTATAG

Coding sequence (CDS)

ATGAGCAAACTTCAGAGAGATGCTTTGAGAGAAGCTATTTCATCTATCTTTGCTGATAGCAGGGAAAAGAACCACAACTTTACTGAGACCATTGAACTTCAGATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTTAGTGGATCAGTGAAGTTGCCCCATATCCCTCACCCTAAGATGAAGATTTGCATGCTTGGAGATGCCTCTCACATTGAAGAGGCAGAGAAAATCAGTTTGGATTATATGGACGTTGAAGGGCCCAACAAGGCAGGAAAGTTCCCTACCCTGGTCACTCACCAAGAATCTCTCGAATCTAAAGTAAATGAGACTAAGTCAATGGTTAAGTCCCAATTGAAGAAGGTTCTTTGCATGGGTGCCACCATAGGCAATGTTGCCATGGAAGAGAAACAAGTTTTATAG

Protein sequence

MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHPKMKICMLGDASHIEEAEKISLDYMDVEGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQVL

Homology

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BLAST of CcUC07G135270 vs. NCBI nr
Match: XP_008458587.1 (PREDICTED: 60S ribosomal protein L10a [Cucumis melo] >XP_011657068.1 60S ribosomal protein L10a [Cucumis sativus] >KGN46947.1 hypothetical protein Csa_021060 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 2.2e-56
Identity = 125/178 (70.22%), Postives = 129/178 (72.47%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ DALREAISSIFADS EK   FTETIELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMKICMLGDASH+EEAEKI LDYMDVE                                 
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMG  +GN+AMEEKQV
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQV 178

[Close]

BLAST of CcUC07G135270 vs. NCBI nr
Match: XP_038893874.1 (60S ribosomal protein L10a [Benincasa hispida] >XP_038893875.1 60S ribosomal protein L10a [Benincasa hispida])

HSP 1 Score: 227.3 bits (578), Expect = 8.5e-56
Identity = 123/178 (69.10%), Postives = 128/178 (71.91%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ DALREAISSIF DS EK   FTETIELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMKICMLGDASH+EEAEKI LDYMDVE                                 
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLVTHQE+LESKVNETK+MVK QLKKVLCMG  +GN+AMEEKQV
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQV 178

[Close]

BLAST of CcUC07G135270 vs. NCBI nr
Match: KAG6570486.1 (Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226.9 bits (577), Expect = 1.1e-55
Identity = 124/178 (69.66%), Postives = 128/178 (71.91%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ +ALREAISSIF DS EK  NFTETIELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 115 MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 174

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMKICMLGDA H+EEAEKI LDYMDVE                                 
Sbjct: 175 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 234

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMG  +GNVAMEEKQV
Sbjct: 235 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQV 292

[Close]

BLAST of CcUC07G135270 vs. NCBI nr
Match: XP_022943718.1 (60S ribosomal protein L10a [Cucurbita moschata] >XP_022943719.1 60S ribosomal protein L10a [Cucurbita moschata] >XP_022985885.1 60S ribosomal protein L10a [Cucurbita maxima] >XP_022985886.1 60S ribosomal protein L10a [Cucurbita maxima] >XP_023513214.1 60S ribosomal protein L10a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.9 bits (577), Expect = 1.1e-55
Identity = 124/178 (69.66%), Postives = 128/178 (71.91%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ +ALREAISSIF DS EK  NFTETIELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMKICMLGDA H+EEAEKI LDYMDVE                                 
Sbjct: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMG  +GNVAMEEKQV
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQV 178

[Close]

BLAST of CcUC07G135270 vs. NCBI nr
Match: XP_022945884.1 (60S ribosomal protein L10a [Cucurbita moschata] >XP_023541044.1 60S ribosomal protein L10a [Cucurbita pepo subsp. pepo] >KAG6573621.1 60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012702.1 60S ribosomal protein L10a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.5 bits (576), Expect = 1.5e-55
Identity = 123/178 (69.10%), Postives = 128/178 (71.91%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ +ALREAISSIF DS EK  NFTETIELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSEALREAISSIFTDSNEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMK+CMLGDA H+EEAEKI LDYMDVE                                 
Sbjct: 61  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMG  +GNVAMEEKQV
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQV 178

[Close]

BLAST of CcUC07G135270 vs. ExPASy Swiss-Prot
Match: B8B9K6 (60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.9e-54
Identity = 111/178 (62.36%), Postives = 124/178 (69.66%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ + L+EAIS +  +S+EK   FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMK+CMLGDA H+EEAEKI LDYMDVE                                 
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLVTHQESLESKVNETK+ VK QLKKVLCMG  +GN++MEEKQ+
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI 178

[Close]

BLAST of CcUC07G135270 vs. ExPASy Swiss-Prot
Match: B7F845 (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.9e-54
Identity = 111/178 (62.36%), Postives = 124/178 (69.66%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ + L+EAIS +  +S+EK   FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMK+CMLGDA H+EEAEKI LDYMDVE                                 
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLVTHQESLESKVNETK+ VK QLKKVLCMG  +GN++MEEKQ+
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI 178

[Close]

BLAST of CcUC07G135270 vs. ExPASy Swiss-Prot
Match: P59231 (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-51
Identity = 112/179 (62.57%), Postives = 124/179 (69.27%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSRE-KNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPH 60
           MSKLQ +A+REAISSI    +E K  NFTETIELQIGLKNYDPQKDKRFSGSVKLPH+P 
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKICMLGDASHIEEAEKISLDYMDVE-------------------------------- 120
           PKMKICMLGDA H+EEAEKI L+ MDVE                                
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 121 ------GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                 G NKAGKFPTLV+HQESLESKVNETK+ VK QLKKVLCMG  +GN++MEEKQ+
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI 179

[Close]

BLAST of CcUC07G135270 vs. ExPASy Swiss-Prot
Match: Q8VZB9 (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.0e-51
Identity = 109/178 (61.24%), Postives = 122/178 (68.54%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ +A+REAI++I   S  K  NF ETIELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMKICMLGDA H+EEAEK+ L+ MDVE                                 
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLV+HQESLESKVNETK+ VK QLKKVLCMG  +GN++MEEKQ+
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI 178

[Close]

BLAST of CcUC07G135270 vs. ExPASy Swiss-Prot
Match: P59230 (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-50
Identity = 108/178 (60.67%), Postives = 122/178 (68.54%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ +A+REAI++I   S EK  NF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMKICMLGDA H+EEAEK+ L  MDVE                                 
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLV+HQESLE+KVNETK+ VK QLKKVLCMG  +GN++MEEKQ+
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQL 178

[Close]

BLAST of CcUC07G135270 vs. ExPASy TrEMBL
Match: A0A0A0KEW8 (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_6G152330 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 125/178 (70.22%), Postives = 129/178 (72.47%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ DALREAISSIFADS EK   FTETIELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMKICMLGDASH+EEAEKI LDYMDVE                                 
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMG  +GN+AMEEKQV
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQV 178

[Close]

BLAST of CcUC07G135270 vs. ExPASy TrEMBL
Match: A0A1S3C7Q8 (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103497946 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 125/178 (70.22%), Postives = 129/178 (72.47%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ DALREAISSIFADS EK   FTETIELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMKICMLGDASH+EEAEKI LDYMDVE                                 
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMG  +GN+AMEEKQV
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQV 178

[Close]

BLAST of CcUC07G135270 vs. ExPASy TrEMBL
Match: A0A6J1JCI3 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111483802 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.4e-56
Identity = 124/178 (69.66%), Postives = 128/178 (71.91%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ +ALREAISSIF DS EK  NFTETIELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMKICMLGDA H+EEAEKI LDYMDVE                                 
Sbjct: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMG  +GNVAMEEKQV
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQV 178

[Close]

BLAST of CcUC07G135270 vs. ExPASy TrEMBL
Match: A0A6J1FXB0 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111448383 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.4e-56
Identity = 124/178 (69.66%), Postives = 128/178 (71.91%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ +ALREAISSIF DS EK  NFTETIELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMKICMLGDA H+EEAEKI LDYMDVE                                 
Sbjct: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMG  +GNVAMEEKQV
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQV 178

[Close]

BLAST of CcUC07G135270 vs. ExPASy TrEMBL
Match: A0A6J1G271 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111449992 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.0e-56
Identity = 123/178 (69.10%), Postives = 128/178 (71.91%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ +ALREAISSIF DS EK  NFTETIELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSEALREAISSIFTDSNEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMK+CMLGDA H+EEAEKI LDYMDVE                                 
Sbjct: 61  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMG  +GNVAMEEKQV
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQV 178

[Close]

BLAST of CcUC07G135270 vs. TAIR 10
Match: AT5G22440.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-52
Identity = 112/179 (62.57%), Postives = 124/179 (69.27%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSRE-KNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPH 60
           MSKLQ +A+REAISSI    +E K  NFTETIELQIGLKNYDPQKDKRFSGSVKLPH+P 
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKICMLGDASHIEEAEKISLDYMDVE-------------------------------- 120
           PKMKICMLGDA H+EEAEKI L+ MDVE                                
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 121 ------GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                 G NKAGKFPTLV+HQESLESKVNETK+ VK QLKKVLCMG  +GN++MEEKQ+
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI 179

[Close]

BLAST of CcUC07G135270 vs. TAIR 10
Match: AT5G22440.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-52
Identity = 112/179 (62.57%), Postives = 124/179 (69.27%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSRE-KNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPH 60
           MSKLQ +A+REAISSI    +E K  NFTETIELQIGLKNYDPQKDKRFSGSVKLPH+P 
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKICMLGDASHIEEAEKISLDYMDVE-------------------------------- 120
           PKMKICMLGDA H+EEAEKI L+ MDVE                                
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 121 ------GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                 G NKAGKFPTLV+HQESLESKVNETK+ VK QLKKVLCMG  +GN++MEEKQ+
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI 179

[Close]

BLAST of CcUC07G135270 vs. TAIR 10
Match: AT1G08360.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 201.8 bits (512), Expect = 3.6e-52
Identity = 109/178 (61.24%), Postives = 122/178 (68.54%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ +A+REAI++I   S  K  NF ETIELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMKICMLGDA H+EEAEK+ L+ MDVE                                 
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLV+HQESLESKVNETK+ VK QLKKVLCMG  +GN++MEEKQ+
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI 178

[Close]

BLAST of CcUC07G135270 vs. TAIR 10
Match: AT2G27530.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 200.7 bits (509), Expect = 8.0e-52
Identity = 108/178 (60.67%), Postives = 122/178 (68.54%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ +A+REAI++I   S EK  NF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMKICMLGDA H+EEAEK+ L  MDVE                                 
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLV+HQESLE+KVNETK+ VK QLKKVLCMG  +GN++MEEKQ+
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQL 178

[Close]

BLAST of CcUC07G135270 vs. TAIR 10
Match: AT2G27530.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 200.7 bits (509), Expect = 8.0e-52
Identity = 108/178 (60.67%), Postives = 122/178 (68.54%), Query Frame = 0


Query: 1   MSKLQRDALREAISSIFADSREKNHNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPHP 60
           MSKLQ +A+REAI++I   S EK  NF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIP P
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKISLDYMDVE--------------------------------- 120
           KMKICMLGDA H+EEAEK+ L  MDVE                                 
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 121 -----GPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGATIGNVAMEEKQV 141
                G NKAGKFPTLV+HQESLE+KVNETK+ VK QLKKVLCMG  +GN++MEEKQ+
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQL 178

The following BLAST results are available for this feature:

BLAST of CcUC07G135270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458587.1	2.2e-56	70.22	PREDICTED: 60S ribosomal protein L10a [Cucumis melo] >XP_011657068.1 60S ribosom...	[more]
XP_038893874.1	8.5e-56	69.10	60S ribosomal protein L10a [Benincasa hispida] >XP_038893875.1 60S ribosomal pro...	[more]
KAG6570486.1	1.1e-55	69.66	Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022943718.1	1.1e-55	69.66	60S ribosomal protein L10a [Cucurbita moschata] >XP_022943719.1 60S ribosomal pr...	[more]
XP_022945884.1	1.5e-55	69.10	60S ribosomal protein L10a [Cucurbita moschata] >XP_023541044.1 60S ribosomal pr...	[more]

BLAST of CcUC07G135270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8B9K6	4.9e-54	62.36	60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3...	[more]
B7F845	4.9e-54	62.36	60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE...	[more]
P59231	1.7e-51	62.57	60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=...	[more]
Q8VZB9	5.0e-51	61.24	60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=...	[more]
P59230	1.1e-50	60.67	60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=...	[more]

BLAST of CcUC07G135270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEW8	1.1e-56	70.22	Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_6G152330 PE=3 SV=1	[more]
A0A1S3C7Q8	1.1e-56	70.22	Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103497946 PE=3 SV=1	[more]
A0A6J1JCI3	5.4e-56	69.66	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111483802 PE=3 SV=1	[more]
A0A6J1FXB0	5.4e-56	69.66	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111448383 PE=3 SV=1	[more]
A0A6J1G271	7.0e-56	69.10	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111449992 PE=3 SV=1	[more]

BLAST of CcUC07G135270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22440.1	1.2e-52	62.57	Ribosomal protein L1p/L10e family	[more]
AT5G22440.2	1.2e-52	62.57	Ribosomal protein L1p/L10e family	[more]
AT1G08360.1	3.6e-52	61.24	Ribosomal protein L1p/L10e family	[more]
AT2G27530.1	8.0e-52	60.67	Ribosomal protein L1p/L10e family	[more]
AT2G27530.2	8.0e-52	60.67	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.190.20		coord: 1..91 e-value: 4.8E-30 score: 106.1
None	No IPR available	GENE3D	3.30.190.20		coord: 117..138 e-value: 6.6E-8 score: 34.4
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 2..95 coord: 88..140
None	No IPR available	PANTHER	PTHR23105:SF164	60S RIBOSOMAL PROTEIN L10A-3	coord: 88..140 coord: 2..95
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 92..116 e-value: 6.6E-8 score: 34.4
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 9..141 e-value: 4.05122E-29 score: 103.418
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC07G135270.1	CcUC07G135270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003723	RNA binding