CcUC07G134830 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC07G134830
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Photosystem II protein D1
Location	CicolChr07: 12369057 .. 12369802 (+)
RNA-Seq Expression	CcUC07G134830
Synteny	CcUC07G134830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACTCCTCAGATACCGTCATTGTTTCTTCTCCGGGAAAAGAAGTTCATGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTCCTGATCATCGCCTTGGTAAGCTATTGCCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCTGGCGGATTCCTCCTTTTGCTCCTCAGCGTACGGGGTCTTAGCAGCCGTTTCCAACTGTTGTTCCCCTCCCAAAGGCAGGTTCTTACGCGTTACTCACCCGCCCGCCACTGGAAACACCACTTCCCGTCTGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAGCCAGGATCGAACTCTCCATGAGATTCAGAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAACTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGTTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTAAAAATAGAAAAACTCACATTGGCTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGA

mRNA sequence

ATGCTTACTCCTCAGATACCGTCATTGTTTCTTCTCCGGGAAAAGAAGTTCATGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCAGAAAATTCCCCACTGCTGCCTCCCCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCTGGCGGATTCCTCCTTTTGCTCCTCAGCGTACGGGGTCTTAGCAGCCGTTTCCAACTGTTGTTCCCCTCCCAAAGGCAGGATCGAACTCTCCATGAGATTCAGAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAACTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGTTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTAAAAATAGAAAAACTCACATTGGCTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGA

Coding sequence (CDS)

ATGCTTACTCCTCAGATACCGTCATTGTTTCTTCTCCGGGAAAAGAAGTTCATGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCAGAAAATTCCCCACTGCTGCCTCCCCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCTGGCGGATTCCTCCTTTTGCTCCTCAGCGTACGGGGTCTTAGCAGCCGTTTCCAACTGTTGTTCCCCTCCCAAAGGCAGGATCGAACTCTCCATGAGATTCAGAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAACTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGTTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTAAAAATAGAAAAACTCACATTGGCTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGA

Protein sequence

MLTPQIPSLFLLREKKFMTRRPSTSTRHCSVRLSPIAENSPLLPPLLPHQLANQTRAPPLADSSFCSSAYGVLAAVSNCCSPPKGRIELSMRFRVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR

Homology

[Close]

BLAST of CcUC07G134830 vs. NCBI nr
Match: PHU30032.1 (Photosystem II protein D1 [Capsicum chinense])

HSP 1 Score: 245.4 bits (625), Expect = 4.0e-61
Identity = 129/168 (76.79%), Postives = 136/168 (80.95%), Query Frame = 0


Query: 22  PSTSTRHCSVRLSPIAENSPLLP-------PLLPHQLANQTRAPPLADSSFCSSAYGVLA 81
           PS  +  C   LSP   + PL P        +LP+QLANQTRAPP  DSSFCSSAYGVLA
Sbjct: 9   PSKESGLC---LSPSVVDHPLGPATDHRLGKILPYQLANQTRAPPRVDSSFCSSAYGVLA 68

Query: 82  AVSNCCSPPKGRIELSMRFRVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKY 141
           AVS+CCSPPKGRIELSMRF VALLIASLFVDKANSELSFIPRHNLYPCASYSPGV SQKY
Sbjct: 69  AVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVHSQKY 128

Query: 142 SHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVK 183
           SHP PLTSIPRASYPFS + GGGA+  RKT IG RDNQARTDDF HVK
Sbjct: 129 SHPCPLTSIPRASYPFSLNDGGGANPTRKTRIGLRDNQARTDDFHHVK 173

[Close]

BLAST of CcUC07G134830 vs. NCBI nr
Match: KAF3622464.1 (Flavonol sulfotransferase-like protein [Capsicum annuum])

HSP 1 Score: 241.9 bits (616), Expect = 4.4e-60
Identity = 120/144 (83.33%), Postives = 127/144 (88.19%), Query Frame = 0


Query: 43  LPPLLPHQLANQTRAPPLADSSFCSSAYGVLAAVSNCCSPPKGRIELSMRFRVALLIASL 102
           L  +LP+QLANQTRAPP  DSSFCSS YGVLAAVS+CCSPPKGRIELSMRF VALLIASL
Sbjct: 65  LGKILPYQLANQTRAPPRVDSSFCSSTYGVLAAVSSCCSPPKGRIELSMRFIVALLIASL 124

Query: 103 FVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNR 162
           FVDKANSELSFIP+HNLY CA YSPGVRSQKYSHP PLTSIPRASYPFS ++GGGA+  R
Sbjct: 125 FVDKANSELSFIPKHNLYLCALYSPGVRSQKYSHPFPLTSIPRASYPFSLNNGGGANPTR 184

Query: 163 KTHIGFRDNQARTDDFRHVKATLY 187
           KT IG RDNQA TDDF HVK TLY
Sbjct: 185 KTRIGLRDNQALTDDFHHVKLTLY 208

[Close]

BLAST of CcUC07G134830 vs. NCBI nr
Match: PHT34490.1 (hypothetical protein CQW23_26290 [Capsicum baccatum])

HSP 1 Score: 235.7 bits (600), Expect = 3.2e-58
Identity = 125/162 (77.16%), Postives = 129/162 (79.63%), Query Frame = 0


Query: 33  LSPIAENSPL-------LPPLLPHQLANQTRAPPLADSSFCSSAYGVLAAVSNCCSPPKG 92
           LSP   N PL       L  LLPHQLANQTR PP  DSSFC SAY VLA VS+  SPPKG
Sbjct: 169 LSPNVVNHPLGLATNHHLGKLLPHQLANQTRDPPWVDSSFCHSAYVVLATVSSFSSPPKG 228

Query: 93  RIELSMRFRVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPR 152
           RIELSMRF VALLIASLFVDKA+SELSFIPRHNLYPCASYSP VRSQKYSHP PLTSIPR
Sbjct: 229 RIELSMRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPRVRSQKYSHPCPLTSIPR 288

Query: 153 ASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR 188
           ASYPFS +  GGA+  RKTHIG RDNQARTDDF HVK  LYR
Sbjct: 289 ASYPFSLNDSGGANPTRKTHIGLRDNQARTDDFHHVKVKLYR 330

[Close]

BLAST of CcUC07G134830 vs. NCBI nr
Match: KAF3622520.1 (30S ribosomal protein S12, chloroplastic [Capsicum annuum])

HSP 1 Score: 228.4 bits (581), Expect = 5.1e-56
Identity = 113/141 (80.14%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 43  LPPLLPHQLANQTRAPPLADSSFCSSAYGVLAAVSNCCSPPKGRIELSMRFRVALLIASL 102
           L  LLPHQL+NQ +APP  DSSFCSS Y VLAAVS+C SPPKGRIEL++RF V LLIASL
Sbjct: 326 LGKLLPHQLSNQMQAPPRVDSSFCSSTYEVLAAVSSCFSPPKGRIELALRFIVILLIASL 385

Query: 103 FVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNR 162
           FVDKA+SELSFIPRHNLYPCA YSPGVRSQKYSHP PLTSIP+ASYPFS + GGGA+  R
Sbjct: 386 FVDKADSELSFIPRHNLYPCALYSPGVRSQKYSHPCPLTSIPQASYPFSLNDGGGANPTR 445

Query: 163 KTHIGFRDNQARTDDFRHVKA 184
           KTHIG RDNQARTDDF HVK+
Sbjct: 446 KTHIGLRDNQARTDDFHHVKS 466

[Close]

BLAST of CcUC07G134830 vs. NCBI nr
Match: VVA28225.1 (PREDICTED: conserved [Prunus dulcis])

HSP 1 Score: 224.6 bits (571), Expect = 7.3e-55
Identity = 118/162 (72.84%), Postives = 125/162 (77.16%), Query Frame = 0


Query: 33  LSPIAENSPLLP-------PLLPHQLANQTRAPPLADSSFCSSAYGVLAAVSNCCSPPKG 92
           LSP   + PL P        LLPHQLANQTRAPP ADSSFCSSAYG LAAVS+CCSPPKG
Sbjct: 142 LSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCSSAYGELAAVSSCCSPPKG 201

Query: 93  RIELSMRFRVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPR 152
           R    +R        +    KA+SELSFIPRHNL PC+SYSPGVRSQKYSHP+PLTSIPR
Sbjct: 202 RF---LRVTHPSATGTTTSHKADSELSFIPRHNLDPCSSYSPGVRSQKYSHPYPLTSIPR 261

Query: 153 ASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR 188
           ASYPFSF HGG ASKNRKTHI FRDNQARTDDF HVK TLYR
Sbjct: 262 ASYPFSFHHGGKASKNRKTHIRFRDNQARTDDFHHVKVTLYR 300

[Close]

BLAST of CcUC07G134830 vs. ExPASy TrEMBL
Match: A0A2G3DGB3 (Photosystem II protein D1 OS=Capsicum chinense OX=80379 GN=BC332_02125 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.9e-61
Identity = 129/168 (76.79%), Postives = 136/168 (80.95%), Query Frame = 0


Query: 22  PSTSTRHCSVRLSPIAENSPLLP-------PLLPHQLANQTRAPPLADSSFCSSAYGVLA 81
           PS  +  C   LSP   + PL P        +LP+QLANQTRAPP  DSSFCSSAYGVLA
Sbjct: 9   PSKESGLC---LSPSVVDHPLGPATDHRLGKILPYQLANQTRAPPRVDSSFCSSAYGVLA 68

Query: 82  AVSNCCSPPKGRIELSMRFRVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKY 141
           AVS+CCSPPKGRIELSMRF VALLIASLFVDKANSELSFIPRHNLYPCASYSPGV SQKY
Sbjct: 69  AVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVHSQKY 128

Query: 142 SHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVK 183
           SHP PLTSIPRASYPFS + GGGA+  RKT IG RDNQARTDDF HVK
Sbjct: 129 SHPCPLTSIPRASYPFSLNDGGGANPTRKTRIGLRDNQARTDDFHHVK 173

[Close]

BLAST of CcUC07G134830 vs. ExPASy TrEMBL
Match: A0A2G2VND6 (Uncharacterized protein ycf68 OS=Capsicum baccatum OX=33114 GN=CQW23_26290 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.5e-58
Identity = 125/162 (77.16%), Postives = 129/162 (79.63%), Query Frame = 0


Query: 33  LSPIAENSPL-------LPPLLPHQLANQTRAPPLADSSFCSSAYGVLAAVSNCCSPPKG 92
           LSP   N PL       L  LLPHQLANQTR PP  DSSFC SAY VLA VS+  SPPKG
Sbjct: 169 LSPNVVNHPLGLATNHHLGKLLPHQLANQTRDPPWVDSSFCHSAYVVLATVSSFSSPPKG 228

Query: 93  RIELSMRFRVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPR 152
           RIELSMRF VALLIASLFVDKA+SELSFIPRHNLYPCASYSP VRSQKYSHP PLTSIPR
Sbjct: 229 RIELSMRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPRVRSQKYSHPCPLTSIPR 288

Query: 153 ASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR 188
           ASYPFS +  GGA+  RKTHIG RDNQARTDDF HVK  LYR
Sbjct: 289 ASYPFSLNDSGGANPTRKTHIGLRDNQARTDDFHHVKVKLYR 330

[Close]

BLAST of CcUC07G134830 vs. ExPASy TrEMBL
Match: A0A5E4FJV7 (PREDICTED: conserved OS=Prunus dulcis OX=3755 GN=ALMOND_2B024298 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.5e-55
Identity = 118/162 (72.84%), Postives = 125/162 (77.16%), Query Frame = 0


Query: 33  LSPIAENSPLLP-------PLLPHQLANQTRAPPLADSSFCSSAYGVLAAVSNCCSPPKG 92
           LSP   + PL P        LLPHQLANQTRAPP ADSSFCSSAYG LAAVS+CCSPPKG
Sbjct: 142 LSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCSSAYGELAAVSSCCSPPKG 201

Query: 93  RIELSMRFRVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPR 152
           R    +R        +    KA+SELSFIPRHNL PC+SYSPGVRSQKYSHP+PLTSIPR
Sbjct: 202 RF---LRVTHPSATGTTTSHKADSELSFIPRHNLDPCSSYSPGVRSQKYSHPYPLTSIPR 261

Query: 153 ASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR 188
           ASYPFSF HGG ASKNRKTHI FRDNQARTDDF HVK TLYR
Sbjct: 262 ASYPFSFHHGGKASKNRKTHIRFRDNQARTDDFHHVKVTLYR 300

[Close]

BLAST of CcUC07G134830 vs. ExPASy TrEMBL
Match: A0A2P5Y1J4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11227 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.2e-52
Identity = 106/125 (84.80%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 43  LPPLLPHQLANQTRAPPLADSSFCSSAYGVLAAVSNCCSPPKGRIELSMRFRVALLIASL 102
           L  LLPHQLANQTRAPP ADSSFCSSAYGVLAAVS+CCSPPKGRIELSMRF VALLIASL
Sbjct: 214 LGKLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASL 273

Query: 103 FVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNR 162
           FVDK  S+LSFIPRHNLYPCA YSPGVRSQKYSHP+PLTSIP+ASYPF FDHGGG  K  
Sbjct: 274 FVDKTGSDLSFIPRHNLYPCALYSPGVRSQKYSHPYPLTSIPQASYPFLFDHGGGQGKIE 333

Query: 163 KTHIG 168
           K  +G
Sbjct: 334 KLTLG 338

[Close]

BLAST of CcUC07G134830 vs. ExPASy TrEMBL
Match: A0A6A5N1F4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00035386 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.1e-48
Identity = 122/185 (65.95%), Postives = 129/185 (69.73%), Query Frame = 0


Query: 18  MTRRPSTSTRHCSVR---LSPIAENSPLLP-------PLLPHQLANQTRAPPLADSSFCS 77
           MTRRPSTSTRHCS     LSP   + PL P        LLPHQLANQTRAPP ADSSFCS
Sbjct: 1   MTRRPSTSTRHCSESGPCLSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCS 60

Query: 78  SAYGVLAAVSNCCSPPKGRIELSMRFRVALLIAS-------LFVDKANSELSFIPRHNLY 137
           SAYGVLAAVS+CCSPPKGR       RV    A+         + KA+SE SFIPR NLY
Sbjct: 61  SAYGVLAAVSSCCSPPKGRF-----LRVTHPSATGNTTSRPTCMYKADSEFSFIPRQNLY 120

Query: 138 PCASYSPGVRSQKYSHPHPLTSIPRASY--PFSFDHGGGASKNRKTHIGFRDNQARTDDF 184
           PCASYSPGVRSQKYS P PL SIP ASY  PFSFDH  G  +NRKTHIGFR NQARTDD 
Sbjct: 121 PCASYSPGVRSQKYS-PPPLPSIPLASYHSPFSFDH--GIKQNRKTHIGFRGNQARTDDL 177

The following BLAST results are available for this feature:

BLAST of CcUC07G134830 vs. NCBI nr


Match Name	E-value	Identity	Description
PHU30032.1	4.0e-61	76.79	Photosystem II protein D1 [Capsicum chinense]	[more]
KAF3622464.1	4.4e-60	83.33	Flavonol sulfotransferase-like protein [Capsicum annuum]	[more]
PHT34490.1	3.2e-58	77.16	hypothetical protein CQW23_26290 [Capsicum baccatum]	[more]
KAF3622520.1	5.1e-56	80.14	30S ribosomal protein S12, chloroplastic [Capsicum annuum]	[more]
VVA28225.1	7.3e-55	72.84	PREDICTED: conserved [Prunus dulcis]	[more]

BLAST of CcUC07G134830 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC07G134830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G3DGB3	1.9e-61	76.79	Photosystem II protein D1 OS=Capsicum chinense OX=80379 GN=BC332_02125 PE=3 SV=1	[more]
A0A2G2VND6	1.5e-58	77.16	Uncharacterized protein ycf68 OS=Capsicum baccatum OX=33114 GN=CQW23_26290 PE=3 ...	[more]
A0A5E4FJV7	3.5e-55	72.84	PREDICTED: conserved OS=Prunus dulcis OX=3755 GN=ALMOND_2B024298 PE=4 SV=1	[more]
A0A2P5Y1J4	2.2e-52	84.80	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11227 PE=4 SV...	[more]
A0A6A5N1F4	1.1e-48	65.95	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00035386 PE=3 SV=1	[more]

BLAST of CcUC07G134830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34890:SF7	BNAUNNG00850D PROTEIN	coord: 105..186
IPR022546	Uncharacterised protein family Ycf68	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 105..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC07G134830.1	CcUC07G134830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0042170	plastid membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding