CcUC07G134100 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC07G134100
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRetrotrans_gag domain-containing protein
LocationCicolChr07: 8222035 .. 8223670 (+)
RNA-Seq ExpressionCcUC07G134100
SyntenyCcUC07G134100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAGTGCAAGTTGAAGGACCAGTGACCCGAGGTAGGCGGCGAGATGATGCTTGTCTGTCGAGCTTAGAAGAAGGACTAGATGATGTGAAACTTGCCATTTGTCGGTTGAGTGAAAGATATGAAGAGCTCCTCCAAGAAAGCTTGGAGATCACGGTAGTTGCCAAAGAGATGATCATGGTGCTGGGACGGACAACGGGAGAAGAGGTAAGATCCCTCACTAAAGAAGTAGCCAACCTAAGGAAGTTCGTGGAAGGGGAACTCCATGATCTTCGCAAAGAGGTCGACGACTTCCGAAAGGAGTGTTGGGAAAGTCGTGTGCAAATGGTAAGGTGTCCACCAGCACCTCTGTCGCTGCAAGGAGCATGAATGGCTTGAAAATTCCAAAGCCCGATACTTATGACGGCACAAGAAGACCGATCATAGTGGACAACTTCTTGTTCGCCTAGAGCAATATTTGATGCTCTAAACGTCATCGACGATGGCACCAAGATAGCCAATGCGCCCAACTTCCTACGAGAGGCAGCCCAGTTATAGTGGCATAGGAAGTATGCTGAGCATGAGCAGAACGAAAATTGCATCAAAACGTGGAGGCAATTCAAAGCGAAATTGCGAAAACATTTTGTGCCTCACAATGCCGATGCGGAAGCATGAGGAAAATTAAGGCACTTAAGGCAGACCGACAGTATTCCCGAGTACATCAAAGAATTTACAACCCTTTTGCTGGAAATTGAAGGCTTATCTGACAAAGACGCACTCTTTTATTTCCGTGATGGCCCAAAAGGATTGGGCAAAGATTGAGCTCGATAGGCGGGGTGTGCACACGCTGGATGATTTGATAGCTGCTGCGGAGATGCTCACGAATTTTTCGTCCAAGACCAGGAAAGCCTCAAAGAAAGAAGAGGAAGTGTCAGAGTTAGATGAATCTGATGCAAATAACAATGAGGGTAGCCATAAGAATGGTCGATGGAATTGGAAGAAAAAGGATAAAGCTGCTAAGAAGAATGGAAGTAAGTCAGCTAGACGCCCTTGCTTCATATGCGATGGACCACATTGGACGTGGGAATGTCCAAAGAAAAAGGCCTTCAACGCCTTGGTGGCCTAGTTCCGAGATGAGGAAGGTCAAGTTGAGCCCCCTACAAAGATGGGTTCCTTGCAGTTTATTGGCACCATGATAAGTGACTTCTCACCACGGAAGATTGATGGGAAGGGACAACAATACGTTGATGCGAAGGTCAACGGTATAATAAAAGAAGTGTTGCTTGATACCGGAGCATCGCACAACTTCATCGACTCGAATATGGCCATAAGTCTTGGTCTCAAGGTCGAAAAAGAAGGCGGAAAGTTGAAAGCGGTGAACTCAGCAACCGTGAAGACCAAAGGAGTTGCCAAAGAAGTTCTCTTAAAGGTGGGAAAATGGCGAGGTTCGGTTGATTTCACCATAGTCCCATTGGATGATTACAAGGTGATCCTAGGAATGGAGTTCTTTCGCAAAACCAACACCACCTTAGCACCCGCCTCAAAACAGTTGTCCTTGTTTGATGGACAACGCATCAGAGTGGTCCCTTTAAAGGAGAAAGAGTTGAATGAGATGAAGGTAATGTCCGCACTCGCCAAAGTAAAGGGATCCATGAAAAGG

mRNA sequence

CGAGTGCAAGTTGAAGGACCAGTGACCCGAGGTAGGCGGCGAGATGATGCTTGTCTGTCGAGCTTAGAAGAAGGACTAGATGATGTGAAACTTGCCATTTGTCGGTTGAGTGAAAGATATGAAGAGCTCCTCCAAGAAAGCTTGGAGATCACGGAGAAAGAGTTGAATGAGATGAAGGTAATGTCCGCACTCGCCAAAGTAAAGGGATCCATGAAAAGG

Coding sequence (CDS)

CGAGTGCAAGTTGAAGGACCAGTGACCCGAGGTAGGCGGCGAGATGATGCTTGTCTGTCGAGCTTAGAAGAAGGACTAGATGATGTGAAACTTGCCATTTGTCGGTTGAGTGAAAGATATGAAGAGCTCCTCCAAGAAAGCTTGGAGATCACGGAGAAAGAGTTGAATGAGATGAAGGTAATGTCCGCACTCGCCAAAGTAAAGGGATCCATGAAAAGG

Protein sequence

RVQVEGPVTRGRRRDDACLSSLEEGLDDVKLAICRLSERYEELLQESLEITEKELNEMKVMSALAKVKGSMKR
Homology
[Close]
BLAST of CcUC07G134100 vs. ExPASy TrEMBL
Match: A0A5D3D3V4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004150 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.2e-04
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 4   VEGPVTRGRRRD------------------DACLSSLEEGLDDVKLAICRLSERYEELLQ 58
           +EGPVTRGR++                   D  L++LE+G++DV+LA+ RLSE +EEL+Q
Sbjct: 105 IEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQLAVGRLSENFEELVQ 164

[Close]
BLAST of CcUC07G134100 vs. ExPASy TrEMBL
Match: A0A5A7TFP3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006290 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.2e-04
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 4   VEGPVTRGRRRD------------------DACLSSLEEGLDDVKLAICRLSERYEELLQ 58
           +EGPVTRGR++                   D  L++LE+G++DV+LA+ RLSE +EEL+Q
Sbjct: 168 IEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQLAVGRLSENFEELVQ 227

[Close]
BLAST of CcUC07G134100 vs. ExPASy TrEMBL
Match: A0A5A7VEX8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.4e-04
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 4  VEGPVTRGRRRD------------------DACLSSLEEGLDDVKLAICRLSERYEELLQ 58
          +EGPVTRGR+                    D  L++LE+G++DV+LA+ RLSE +EEL+Q
Sbjct: 15 IEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQLAVGRLSENFEELVQ 74

[Close]
BLAST of CcUC07G134100 vs. ExPASy TrEMBL
Match: A0A5A7TAA5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00340 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.4e-04
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 4  VEGPVTRGRRRD------------------DACLSSLEEGLDDVKLAICRLSERYEELLQ 58
          +EGPVTRGR+                    D  L++LE+G++DV+LA+ RLSE +EEL+Q
Sbjct: 15 IEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQLAVGRLSENFEELVQ 74

The following BLAST results are available for this feature:
BLAST of CcUC07G134100 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC07G134100 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC07G134100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D3V47.2e-0443.24Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TFP37.2e-0443.24Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7VEX89.4e-0443.24Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=... [more]
A0A5A7TAA59.4e-0443.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CcUC07G134100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 41..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC07G134100.1CcUC07G134100.1mRNA