CcUC07G132940 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC07G132940
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionGlutamate receptor
LocationCicolChr07: 5337255 .. 5338345 (-)
RNA-Seq ExpressionCcUC07G132940
SyntenyCcUC07G132940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATGTAAACGGAAGAAGAAAAAAAAAAAACAACTAAATAAGAACAGATATATAAGAAAACAATGTAAAAGAGTACAAAATTGAGCTACATGAAAAAAAAAAAAAAAAATGAAGAAATAAGGACAATAGCAGTAGCAAAAACCTCTAATACTTTACTCCGTTTCTTTTTCAAATCACTTCTTTGTTTTGCATTGAAGAAGGTAAATAATACATAGTGAAGAAATTCTCTTCCGATTGAATTCTCTGGTGTTATTTCCTCTTTCTTTATCTTTCTCAACTTGGTATCAAAGCCATTAATGGCTAACCCCAGTCAAACTTAGTCCTCTGTTACCTATTTTGCTAATGGGTTTGGATCTTTAACCAACCTACCTTTGAATCAGTTGTTGAATCAAATCACGTCCATTAAAATGGATAGATCCAATTTTCTTCTTTTGCAGAATCTGGCCTGACCAATTCTTTATAGATATGGACTCGAAGGGTACCTCACTGGGGAAAAACTATGCCCTAGCAGATTTATAACCCAGGAATCGAGCAACAATGAAGGGCTGAGTAGTGTCGTTGCTCCAGTCGCCAAGCAACAACCCAATCCTGCGTATCAATCGTGGATTGCAGTTGATCATCTAGTTCTTGGTTGGATGTATAACTCCATGTCTCAAGACATTGCTACCAAGATAATGGAGTTTCAGATCTCGAAGGAACTTTGGGATGCTGTACAACAATTGTTTGGAATTCAATCCAGAGCAAAGGTTTGATTATCTCAAGCTACTTTTTCAACAGACAAGGAAAGGTGCGTTGAAAATGGATGAGTACTTAGCTACTATGAAAAAAAATACTCTAATAGACTCGCTCTTGCAGGTAGTCTTGTGCTTGTTAGTGATTTGGTTTCATAGGTGTTGTCTAGGTTAGATGAGGGATACAACCTTGTTGTTGTTTCAATTCAGGGGAAGTATGGAATTACTTGGACTAAGGTGCAGTCTGATCTTCTATTTTATGAACGTCGGTTGGAGTATCAACTAACTATGAAGACTGGGCTGATGAATTTAAATCGTTACGTCGCTCCTCCATCTGCCAATATAGTTCAAAGTTCT

mRNA sequence

ATGAGATTTGATCATCTAGTTCTTGGTTGGATGTATAACTCCATGTCTCAAGACATTGCTACCAAGATAATGGAGTTTCAGATCTCGAAGGAACTTTGGGATGCTGTACAACAATTGTTTGGAATTCAATCCAGAGCAAAGGTGTTGTCTAGGTTAGATGAGGGATACAACCTTGTTGTTGTTTCAATTCAGGGGAAGTATGGAATTACTTGGACTAAGGTGCAGTCTGATCTTCTATTTTATGAACGTCGGTTGGAGTATCAACTAACTATGAAGACTGGGCTGATGAATTTAAATCGTTACGTCGCTCCTCCATCTGCCAATATAGTTCAAAGTTCT

Coding sequence (CDS)

ATGAGATTTGATCATCTAGTTCTTGGTTGGATGTATAACTCCATGTCTCAAGACATTGCTACCAAGATAATGGAGTTTCAGATCTCGAAGGAACTTTGGGATGCTGTACAACAATTGTTTGGAATTCAATCCAGAGCAAAGGTGTTGTCTAGGTTAGATGAGGGATACAACCTTGTTGTTGTTTCAATTCAGGGGAAGTATGGAATTACTTGGACTAAGGTGCAGTCTGATCTTCTATTTTATGAACGTCGGTTGGAGTATCAACTAACTATGAAGACTGGGCTGATGAATTTAAATCGTTACGTCGCTCCTCCATCTGCCAATATAGTTCAAAGTTCT

Protein sequence

MRFDHLVLGWMYNSMSQDIATKIMEFQISKELWDAVQQLFGIQSRAKVLSRLDEGYNLVVVSIQGKYGITWTKVQSDLLFYERRLEYQLTMKTGLMNLNRYVAPPSANIVQSS
Homology
[Close]
BLAST of CcUC07G132940 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 8.2e-17
Identity = 56/154 (36.36%), Postives = 84/154 (54.55%), Query Frame = 0 

Query: 4   DHLVLGWMYNSMSQDIATKIMEFQISKELWDAVQQLFGIQSRA----------------- 63
           D L+LGW+YNSM+ D+A ++M F  S+ELW AVQ+LFG+QSRA                 
Sbjct: 107 DKLLLGWLYNSMAADVAMQVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSL 166

Query: 64  ------------------------------KVLSRLDEGYNLVVVSIQGKYGITWTKVQS 111
                                         +VL+ LDE YN +VV++QGK  ++W+++ +
Sbjct: 167 QMIEYLKLMKSHADNLALAGSSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHA 226

[Close]
BLAST of CcUC07G132940 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 0 

Query: 4   DHLVLGWMYNSMSQDIATKIMEFQISKELWDAVQQLFGIQSRAK----------VLSRLD 63
           D L+LGW+YNSM+ D+A ++M F   ++LWDA Q  FG+QSRA+              LD
Sbjct: 112 DLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLD 171

Query: 64  EGYNLVVVSIQGKYGITWTKVQSDLLFYERRLEYQLTMKTGLMNLNRYVAPPSANIVQ 112
           E YNLV+V IQGK  I+W  +QS LL +E+RL++Q T K    N+ +    P+ N+ Q
Sbjct: 172 EVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQ---SPALNMAQ 226

[Close]
BLAST of CcUC07G132940 vs. NCBI nr
Match: XP_016902205.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 0 

Query: 4   DHLVLGWMYNSMSQDIATKIMEFQISKELWDAVQQLFGIQSRAK----------VLSRLD 63
           D L+LGW+YNSM+ D+A ++M F   ++LWDA Q  FG+QSRA+              LD
Sbjct: 112 DLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLD 171

Query: 64  EGYNLVVVSIQGKYGITWTKVQSDLLFYERRLEYQLTMKTGLMNLNRYVAPPSANIVQ 112
           E YNLV+V IQGK  I+W  +QS LL +E+RL++Q T K    N+ +    P+ N+ Q
Sbjct: 172 EVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQ---SPALNMAQ 226

[Close]
BLAST of CcUC07G132940 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 0 

Query: 4   DHLVLGWMYNSMSQDIATKIMEFQISKELWDAVQQLFGIQSRAK----------VLSRLD 63
           D L+LGW+YNSM+ D+A ++M F   ++LWDA Q  FG+QSRA+              LD
Sbjct: 112 DLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLD 171

Query: 64  EGYNLVVVSIQGKYGITWTKVQSDLLFYERRLEYQLTMKTGLMNLNRYVAPPSANIVQ 112
           E YNLV+V IQGK  I+W  +QS LL +E+RL++Q T K    N+ +    P+ N+ Q
Sbjct: 172 EVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQ---SPALNMAQ 226

[Close]
BLAST of CcUC07G132940 vs. NCBI nr
Match: XP_016902204.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 0 

Query: 4   DHLVLGWMYNSMSQDIATKIMEFQISKELWDAVQQLFGIQSRAK----------VLSRLD 63
           D L+LGW+YNSM+ D+A ++M F   ++LWDA Q  FG+QSRA+              LD
Sbjct: 112 DLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLD 171

Query: 64  EGYNLVVVSIQGKYGITWTKVQSDLLFYERRLEYQLTMKTGLMNLNRYVAPPSANIVQ 112
           E YNLV+V IQGK  I+W  +QS LL +E+RL++Q T K    N+ +    P+ N+ Q
Sbjct: 172 EVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQ---SPALNMAQ 226

[Close]
BLAST of CcUC07G132940 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.0e-17
Identity = 56/154 (36.36%), Postives = 84/154 (54.55%), Query Frame = 0 

Query: 4   DHLVLGWMYNSMSQDIATKIMEFQISKELWDAVQQLFGIQSRA----------------- 63
           D L+LGW+YNSM+ D+A ++M F  S+ELW AVQ+LFG+QSRA                 
Sbjct: 107 DKLLLGWLYNSMAADVAMQVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSL 166

Query: 64  ------------------------------KVLSRLDEGYNLVVVSIQGKYGITWTKVQS 111
                                         +VL+ LDE YN +VV++QGK  ++W+++ +
Sbjct: 167 QMIEYLKLMKSHADNLALAGSSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHA 226

[Close]
BLAST of CcUC07G132940 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 0 

Query: 4   DHLVLGWMYNSMSQDIATKIMEFQISKELWDAVQQLFGIQSRAK----------VLSRLD 63
           D L+LGW+YNSM+ D+A ++M F   ++LWDA Q  FG+QSRA+              LD
Sbjct: 112 DLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLD 171

Query: 64  EGYNLVVVSIQGKYGITWTKVQSDLLFYERRLEYQLTMKTGLMNLNRYVAPPSANIVQ 112
           E YNLV+V IQGK  I+W  +QS LL +E+RL++Q T K    N+ +    P+ N+ Q
Sbjct: 172 EVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQ---SPALNMAQ 226

[Close]
BLAST of CcUC07G132940 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 0 

Query: 4   DHLVLGWMYNSMSQDIATKIMEFQISKELWDAVQQLFGIQSRAK----------VLSRLD 63
           D L+LGW+YNSM+ D+A ++M F   ++LWDA Q  FG+QSRA+              LD
Sbjct: 112 DLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLD 171

Query: 64  EGYNLVVVSIQGKYGITWTKVQSDLLFYERRLEYQLTMKTGLMNLNRYVAPPSANIVQ 112
           E YNLV+V IQGK  I+W  +QS LL +E+RL++Q T K    N+ +    P+ N+ Q
Sbjct: 172 EVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQ---SPALNMAQ 226

[Close]
BLAST of CcUC07G132940 vs. ExPASy TrEMBL
Match: A0A1S4E1V2 (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 0 

Query: 4   DHLVLGWMYNSMSQDIATKIMEFQISKELWDAVQQLFGIQSRAK----------VLSRLD 63
           D L+LGW+YNSM+ D+A ++M F   ++LWDA Q  FG+QSRA+              LD
Sbjct: 112 DLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLD 171

Query: 64  EGYNLVVVSIQGKYGITWTKVQSDLLFYERRLEYQLTMKTGLMNLNRYVAPPSANIVQ 112
           E YNLV+V IQGK  I+W  +QS LL +E+RL++Q T K    N+ +    P+ N+ Q
Sbjct: 172 EVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQ---SPALNMAQ 226

[Close]
BLAST of CcUC07G132940 vs. ExPASy TrEMBL
Match: A0A1S4E2K3 (uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 0 

Query: 4   DHLVLGWMYNSMSQDIATKIMEFQISKELWDAVQQLFGIQSRAK----------VLSRLD 63
           D L+LGW+YNSM+ D+A ++M F   ++LWDA Q  FG+QSRA+              LD
Sbjct: 112 DLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLD 171

Query: 64  EGYNLVVVSIQGKYGITWTKVQSDLLFYERRLEYQLTMKTGLMNLNRYVAPPSANIVQ 112
           E YNLV+V IQGK  I+W  +QS LL +E+RL++Q T K    N+ +    P+ N+ Q
Sbjct: 172 EVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQ---SPALNMAQ 226

The following BLAST results are available for this feature:
BLAST of CcUC07G132940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151683.18.2e-1736.36uncharacterized protein LOC111019598 [Momordica charantia][more]
XP_016902203.11.1e-1644.07PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo][more]
XP_016902205.11.1e-1644.07PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo][more]
XP_016902197.11.1e-1644.07PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo][more]
XP_016902204.11.1e-1644.07PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo][more]
BLAST of CcUC07G132940 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC07G132940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DCW44.0e-1736.36uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A1S4E1U95.2e-1744.07uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E1U65.2e-1744.07uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E1V25.2e-1744.07uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E2K35.2e-1744.07uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of CcUC07G132940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC07G132940.1CcUC07G132940.1mRNA