CcUC07G130110 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC07G130110
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionZinc finger
LocationCicolChr07: 1727092 .. 1728815 (+)
RNA-Seq ExpressionCcUC07G130110
SyntenyCcUC07G130110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTACTAAATGGTCCAATTCAAGAATAAAGATCTCCGTTCCTGAAGCCAACTCCTCCAACATACTGTATATGTCTTCTCCTTGTGGATGCGAACGATCTCCAGCAACAAATGCAAAAACACTATCCTTGACCTTTATCGAAGACCATCCTGGCTCCTTAACCACCCCCTTTGATTTCATTAACATTCGAATATTTGCTGCTTCCTTCCACTTTCCCTTAGCAGCAAAAATGTTTGCTAAGGTTATGTGAGCCCCAGCACAATTTGGATCTAACTTTAGAACTTCAGCAGCAGCACGTTGTCCACAATCAACATCACCATGGACTCTACATGCTCTCAGCAAAGTAGACCAGACAACATCGTCCTGTTGAAATGGCATGCTTCTGATCAACCTCTCTGCATCATATAATCGTCCTGCTCGACAGAGAAGATCAACCATACATCCATAGTGTTCTTTTGAAGGAGTGATGTGATAATCTTTGCTCATTGAGTTGAAGTAGTGGAAACCAAGGTCAACCATTCCTGCATGGCTACAAGCAGTAAGGACGCCAATGAAGGTCACAGAGTCTGGTCTCAAACCAACCTTTTGGATATTTTCAAACAATTCAATGGCTTCCTGGCTATGTCCATGTTCAGCATACCCGCTAATCATTGCTGTCCATGAAATTACGTCATCTTTCAATGAATCCATAAAGATCTTAGAAGCTTCCACTATGCTCCCACATTTTGCATACATAATAATAAGAGCACTACATACCATGGATGTATGTTCTAACCCAACAGACAAAACATGAGCATGCAATTGCTTCCCCTGCTCGAGAATCGCCATACTTCCACATACACTCAGCACACTAGCCAGGGCAAACTCATTTGGTTTCGGTCCTTCACTTCTCATCCTTGACAGATACTCAAAAGCTTCTTTGCCATAGCCTACTTGAGAATATGCTGCAATTATAGTGCTCCAAGTAATGATGTCTCTAAAATTCATTGAACAAAATATCTTTGAAACTGAAGGTAACTCCCCACATTTTGAGTACATGGTCATGATAGAGTTAGCAACTGACAAAGCATTCAGAAACCCAACACGTAAAACATGAGCATGTAGCTGTTCCCCCCATTTCAACCTTGCAAGATTAGCACAACCAGAGATAACAGCAGCAAAGGTATATTCATTTGGAACCACATTGCTTTCCTGCATTCTTTTAAATGCTTGAATACCACATTCCTCCTTACCCATTTGAATGTATGTCGTTACAATTGTTGTCCACGAAACGACATCTGGAGTCCTCATCTTTCCAAACATATACAAACCATAATCTAGCTTACCACATTTGTTATACATGGTGGCCAGCGAATTGGCCACAAAGGAATTCTTATCAAATCCTTTCTTCAGTGTCTGTGTATGAATTGATCTTCCATGATTTAGTGCACCTGAATCAGCACTGGCCTTCAATGCTATAGCATATGCATACGAGTCATATTCGATCTTCGACCTTCCCATTAAAGAAAAGTAAGCTAGCCCGTCCTCACTATACCCTGCACGAACAAGCCCAGTTATAACTGCTGTCCAAGTCACCGCATTTCTTGTCTGCATTTCATCGAACACTTCACGACTTCTCCCAATTTCTCCAATTTTCATATACATGTCGAGAAGGGCACTACCGACGAAAACGGAGTTGACTAGACCTGTTTTGACCGAAAGCCCATGCAAGTTCGTACCACAAAAA

mRNA sequence

TTACTAAATGGTCCAATTCAAGAATAAAGATCTCCGTTCCTGAAGCCAACTCCTCCAACATACTGTATATGTCTTCTCCTTGTGGATGCGAACGATCTCCAGCAACAAATGCAAAAACACTATCCTTGACCTTTATCGAAGACCATCCTGGCTCCTTAACCACCCCCTTTGATTTCATTAACATTCGAATATTTGCTGCTTCCTTCCACTTTCCCTTAGCAGCAAAAATGTTTGCTAAGAACTTCAGCAGCAGCACGTTGTCCACAATCAACATCACCATGGACTCTACATGCTCTCAGCAAAGTAGACCAGACAACATCTGGAAACCAAGGTCAACCATTCCTGCATGGCTACAAGCAGTAAGGACGCCAATGAAGGTCACAGAGTCTGGTCTCAAACCAACCTTTTGGATATTTTCAAACAATTCAATGGCTTCCTGGCTATGTCCATGTTCAGCATACCCGCTAATCATTGCTGTCCATGAAATTACGTCATCTTTCAATGAATCCATAAAGATCTTAGAAGCTTCCACTATGCTCCCACATTTTGCATACATAATAATAAGAGCACTACATACCATGGATATACTCAAAAGCTTCTTTGCCATAGCCTACTTGAGAATATGCTGCAATTATAGTGCTCCAACACTGGCCTTCAATGCTATAGCATATGCATACGAGTCATATTCGATCTTCGACCTTCCCATTAAAGAAAACCCGTCCTCACTATACCCTGCACGAACAAGCCCAGTTATAACTGCTGTCCAAGTCACCGCATTTCTTGTCTGCATTTCATCGAACACTTCACGACTTCTCCCAATTTCTCCAATTTTCATATACATGTCGAGAAGGGCACTACCGACGAAAACGGAGTTGACTAGACCTGTTTTGACCGAAAGCCCATGCAAGTTCGTACCACAAAAA

Coding sequence (CDS)

ATGTCTTCTCCTTGTGGATGCGAACGATCTCCAGCAACAAATGCAAAAACACTATCCTTGACCTTTATCGAAGACCATCCTGGCTCCTTAACCACCCCCTTTGATTTCATTAACATTCGAATATTTGCTGCTTCCTTCCACTTTCCCTTAGCAGCAAAAATGTTTGCTAAGAACTTCAGCAGCAGCACGTTGTCCACAATCAACATCACCATGGACTCTACATGCTCTCAGCAAAGTAGACCAGACAACATCTGGAAACCAAGGTCAACCATTCCTGCATGGCTACAAGCAGTAAGGACGCCAATGAAGGTCACAGAGTCTGGTCTCAAACCAACCTTTTGGATATTTTCAAACAATTCAATGGCTTCCTGGCTATGTCCATGTTCAGCATACCCGCTAATCATTGCTGTCCATGAAATTACGTCATCTTTCAATGAATCCATAAAGATCTTAGAAGCTTCCACTATGCTCCCACATTTTGCATACATAATAATAAGAGCACTACATACCATGGATATACTCAAAAGCTTCTTTGCCATAGCCTACTTGAGAATATGCTGCAATTATAGTGCTCCAACACTGGCCTTCAATGCTATAGCATATGCATACGAGTCATATTCGATCTTCGACCTTCCCATTAAAGAAAACCCGTCCTCACTATACCCTGCACGAACAAGCCCAGTTATAACTGCTGTCCAAGTCACCGCATTTCTTGTCTGCATTTCATCGAACACTTCACGACTTCTCCCAATTTCTCCAATTTTCATATACATGTCGAGAAGGGCACTACCGACGAAAACGGAGTTGACTAGACCTGTTTTGACCGAAAGCCCATGCAAGTTCGTACCACAAAAA

Protein sequence

MSSPCGCERSPATNAKTLSLTFIEDHPGSLTTPFDFINIRIFAASFHFPLAAKMFAKNFSSSTLSTINITMDSTCSQQSRPDNIWKPRSTIPAWLQAVRTPMKVTESGLKPTFWIFSNNSMASWLCPCSAYPLIIAVHEITSSFNESIKILEASTMLPHFAYIIIRALHTMDILKSFFAIAYLRICCNYSAPTLAFNAIAYAYESYSIFDLPIKENPSSLYPARTSPVITAVQVTAFLVCISSNTSRLLPISPIFIYMSRRALPTKTELTRPVLTESPCKFVPQK
Homology
BLAST of CcUC07G130110 vs. NCBI nr
Match: GER27977.1 (zinc finger [Striga asiatica])

HSP 1 Score: 106.7 bits (265), Expect = 3.4e-19
Identity = 56/89 (62.92%), Postives = 60/89 (67.42%), Query Frame = 0

Query: 85  WKPRSTIPAWLQAVRTPMKVTESGLKPTFWIFSNNSMASWLCPCSAYPLIIAVHEITSSF 144
           W PR   PAWL A RTPMKVTESG +P   I SNNSMAS L PCSAYPLIIAVHE  SSF
Sbjct: 138 WDPRPRSPAWLHAPRTPMKVTESGRRPASGILSNNSMASRLNPCSAYPLIIAVHETISSF 197

Query: 145 NESIKILEASTMLPHFAYIIIRALHTMDI 174
             S K   AS M PHF Y+ +R L  M +
Sbjct: 198 RVSEKTFAASKMQPHFEYMFMRELGIMAV 226

BLAST of CcUC07G130110 vs. NCBI nr
Match: KAF7806299.1 (basic leucine zipper 43-like [Senna tora])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-07
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 87  PRSTIPAWLQAVRTPMKVTESGLKPTFWIFSNNSMASWLCPCSAYPLIIAVHEITSSFNE 146
           P  T PAWL A+++P+ V ESGL P   I SNNS+AS  CP   YP II  H+ +S    
Sbjct: 208 PSVTKPAWLHAIKSPINVKESGLHPELCINSNNSIASRPCPLIPYPAIITFHDASSFSFT 267

Query: 147 SIKILEASTMLPHFAYIIIRAL 169
             K L  S+M P FAY+ I+ +
Sbjct: 268 LSKRLRDSSMEPLFAYMSIKMI 289

BLAST of CcUC07G130110 vs. NCBI nr
Match: KAF7822208.1 (protein TIFY 6B-like isoform X2 [Senna tora])

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-07
Identity = 40/76 (52.63%), Postives = 42/76 (55.26%), Query Frame = 0

Query: 92  PAWLQAVRTPMKVTESGLKPTFWIFSNNSMASWLCPCSAYPLIIAVHEITSSFNESIKIL 151
           PAWLQA RT  K   SGL P   I S    A   CP   YP IIAVHE+T       KI 
Sbjct: 394 PAWLQAERTVTKTVSSGLIPDLIISSKRFSAISPCPWIPYPPIIAVHEMTLFSAMESKIA 453

Query: 152 EASTMLPHFAYIIIRA 168
            A T LPH AYI+IRA
Sbjct: 454 RAFTKLPHLAYILIRA 469

BLAST of CcUC07G130110 vs. NCBI nr
Match: KAB8081357.1 (hypothetical protein EE612_002505 [Oryza sativa] >KAB8109837.1 hypothetical protein EE612_046342 [Oryza sativa] >BAS72058.1 Os01g0355175 [Oryza sativa Japonica Group] >BAT07053.1 Os09g0251650 [Oryza sativa Japonica Group])

HSP 1 Score: 65.5 bits (158), Expect = 8.7e-07
Identity = 38/73 (52.05%), Postives = 42/73 (57.53%), Query Frame = 0

Query: 89  STIPAWLQAVRTPMKVTESGLKPTFWIFSNNSMASWLCPCSAYPLIIAVHEITSSFNESI 148
           ST PAWLQA RT + V   GL P+  I  NNS A + CPC A P IIA HE T       
Sbjct: 16  STSPAWLQAQRTLVMVMWFGLMPSSTILPNNSNALFPCPCCASPPIIADHETTPLSGRLE 75

Query: 149 KILEASTMLPHFA 162
           K   AS+MLPH A
Sbjct: 76  KANSASSMLPHLA 88

BLAST of CcUC07G130110 vs. NCBI nr
Match: GER43126.1 (genome polyprotein [Striga asiatica])

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-06
Identity = 62/205 (30.24%), Postives = 84/205 (40.98%), Query Frame = 0

Query: 87  PRSTIPAWLQAVRTPMKVTESGLKPTFWIFSNNSMASWLCPCSAYPLIIAVHEITSSFNE 146
           P ST P WL AV +P  VT  G    F+I    S+A    PC A P+II +H  TS    
Sbjct: 8   PSSTRPEWLHAVMSPRNVTSLGWASDFFISLKRSIALVPNPCKARPVIIELHTTTSFNGI 67

Query: 147 SIKILEASTMLPHFAYIIIRALHT----MDILKSFFAIAYLRICCNYSAPTLAFNAIAYA 206
             K   A T LPHFAY+ I  L      +++L   ++  +       +  T         
Sbjct: 68  RSKTSRAKTKLPHFAYMSISPLQMYTSFLNLLSDTYSSIHFACSSEPNWATARTEDCIVP 127

Query: 207 YESYSIFDLPIKENPSSLYPAR---TSPVITAVQVTAFLVCIS-SNTSRLLPISPIFIYM 266
               ++FD+ I E  SS   AR     P I   Q   FL   + SN        P F Y 
Sbjct: 128 SSGRTLFDI-ISEKRSSASSARPFLAKPEIMEFQRITFLPSFTRSNRDFASSTCPHFAYR 187

Query: 267 SRRALPTKTELTRPVLTESPCKFVP 284
              A+     +++PV T +P    P
Sbjct: 188 EVSAICRSGSVSKPVFTANPWMHFP 211

BLAST of CcUC07G130110 vs. ExPASy TrEMBL
Match: A0A5A7P5L8 (Zinc finger OS=Striga asiatica OX=4170 GN=STAS_03735 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-19
Identity = 56/89 (62.92%), Postives = 60/89 (67.42%), Query Frame = 0

Query: 85  WKPRSTIPAWLQAVRTPMKVTESGLKPTFWIFSNNSMASWLCPCSAYPLIIAVHEITSSF 144
           W PR   PAWL A RTPMKVTESG +P   I SNNSMAS L PCSAYPLIIAVHE  SSF
Sbjct: 138 WDPRPRSPAWLHAPRTPMKVTESGRRPASGILSNNSMASRLNPCSAYPLIIAVHETISSF 197

Query: 145 NESIKILEASTMLPHFAYIIIRALHTMDI 174
             S K   AS M PHF Y+ +R L  M +
Sbjct: 198 RVSEKTFAASKMQPHFEYMFMRELGIMAV 226

BLAST of CcUC07G130110 vs. ExPASy TrEMBL
Match: A0A0A9U3C2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-08
Identity = 39/73 (53.42%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 89  STIPAWLQAVRTPMKVTESGLKPTFWIFSNNSMASWLCPCSAYPLIIAVHEITSSFNESI 148
           ST PAWLQA RT +KV   G  P+  I  NNS A + CPC A P IIA HE T       
Sbjct: 13  STSPAWLQAERTLVKVMWFGATPSSSILWNNSKALFPCPCCANPPIIADHETTPLSGRPE 72

Query: 149 KILEASTMLPHFA 162
           K + AS+MLPHFA
Sbjct: 73  KTMSASSMLPHFA 85

BLAST of CcUC07G130110 vs. ExPASy TrEMBL
Match: A0A0A8XY13 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07
Identity = 38/73 (52.05%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 89  STIPAWLQAVRTPMKVTESGLKPTFWIFSNNSMASWLCPCSAYPLIIAVHEITSSFNESI 148
           ST PAWLQA RT + V   G  P+  I  NNS A + CPC A P IIA HE T       
Sbjct: 13  STSPAWLQAERTLVMVMWFGATPSSSILWNNSNALFPCPCCANPPIIADHETTPLCGRPE 72

Query: 149 KILEASTMLPHFA 162
           K + AS+MLPHFA
Sbjct: 73  KAMSASSMLPHFA 85

BLAST of CcUC07G130110 vs. ExPASy TrEMBL
Match: A0A0A9Q9J2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07
Identity = 38/73 (52.05%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 89  STIPAWLQAVRTPMKVTESGLKPTFWIFSNNSMASWLCPCSAYPLIIAVHEITSSFNESI 148
           ST PAWLQA RT + V   G  P+  I  NNS A + CPC A P IIA HE T       
Sbjct: 13  STSPAWLQAERTLVMVMWFGATPSSSILWNNSNALFPCPCCANPPIIADHETTPLCGRPE 72

Query: 149 KILEASTMLPHFA 162
           K + AS+MLPHFA
Sbjct: 73  KAMSASSMLPHFA 85

BLAST of CcUC07G130110 vs. ExPASy TrEMBL
Match: A0A0P0V2A9 (Os01g0355175 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0355175 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-07
Identity = 38/73 (52.05%), Postives = 42/73 (57.53%), Query Frame = 0

Query: 89  STIPAWLQAVRTPMKVTESGLKPTFWIFSNNSMASWLCPCSAYPLIIAVHEITSSFNESI 148
           ST PAWLQA RT + V   GL P+  I  NNS A + CPC A P IIA HE T       
Sbjct: 16  STSPAWLQAQRTLVMVMWFGLMPSSTILPNNSNALFPCPCCASPPIIADHETTPLSGRLE 75

Query: 149 KILEASTMLPHFA 162
           K   AS+MLPH A
Sbjct: 76  KANSASSMLPHLA 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GER27977.13.4e-1962.92zinc finger [Striga asiatica][more]
KAF7806299.11.0e-0746.34basic leucine zipper 43-like [Senna tora][more]
KAF7822208.13.0e-0752.63protein TIFY 6B-like isoform X2 [Senna tora][more]
KAB8081357.18.7e-0752.05hypothetical protein EE612_002505 [Oryza sativa] >KAB8109837.1 hypothetical prot... [more]
GER43126.11.9e-0630.24genome polyprotein [Striga asiatica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7P5L81.6e-1962.92Zinc finger OS=Striga asiatica OX=4170 GN=STAS_03735 PE=4 SV=1[more]
A0A0A9U3C22.2e-0853.42Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A8XY131.4e-0752.05Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9Q9J21.4e-0752.05Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0P0V2A94.2e-0752.05Os01g0355175 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0355175 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC07G130110.1CcUC07G130110.1mRNA