CcUC07G129300 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC07G129300
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr07: 886515 .. 888088 (-)
RNA-Seq ExpressionCcUC07G129300
SyntenyCcUC07G129300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCACCAATATTCCGGTGCCGGTCCGGCAAAGGGCTTACGCCGGAAAATATATCTGCGGCAGTGCGGGCGCACCTCTACTACATAGATAAGTCCGAGCTGATCCTTTTGGTGTGGCCTCGAAGACAAACTAAACCCTAAACAAAATGCATAGGATTTTTCCTTGAACAGTTTAGATAAACATTAAGCAAATAATGTGTTAAGTAGGAAATTAGGTTAGGATAATTTATTAATTTCTCTTTAAGAAATGATATCTATGTTATATACTTTTTGTTTTTTTATTTTTGAACAAGATAAGGGAGTGAGATCAGTAAACACATCCATCCACGAAATATATATATATATATTTTTCATTTTAAACATATATATTAAGAATAAGACATCCCTTGATTATTTGTAGCCAAGATATTATATTTTCGTCGACATGACATTTTCATTAATATTTTCACATGTTCATGAACACGACGTCTAAATGAGAGGTAATTCAATTAATATTTCCATTATGTGAGAAATAAATCCATGCAACATGTGAAAAATAAACAACAAAATGTAACCATTACAGATACATAATTGAAAAAATAAAGGTTAAAACATATTAAAGAAAAACAGTCGTACTTAACAAATGGATTGAGGTTTATGTCTAATATATGAACTCTCTTTTAATTTTCAAAAGTATTTAATCAATTAGTCCATAAATTTTTCATTCATGTACTGAATTTTCAATTTTGTGTTTAATTTATCATATATAAAATTGAAAATTTAAAAATCTGTTAAATATATATCTTTTAAAGTTTATAGATCTTTTAAACCTAAACTTTAAAATTTTAAGAACTCTATTAAATAGCTTTAGAAAGTTTAAAAACTAAACATATAATTTAATCTAGTAATTTTGATTGGTGATTCAAAAAGAAGAAGAAGGAAAAAAAAAATGAAAGTAAAACGAAAAACAAATTTGGAACTAAACAAAGAAGTCTCATTTTCTCATGTGTACCTTTTTTCTTCTTCAAGAAAGTCATTCTCAACTTCCACTAGTTTGACCCAATCAAAATTCTTTCCCTGTTTACCTTCTCAAATGGCCAAGACTCAACTCAATTTATTATTCGAAGAGTTTGTAAAGAAAACAAGGAAAGTGAAGCCAAATTTGTTTGTATAAATAGAGCTCAACAAACCTCCTCAAATGTCACCTTAATTACCATATATATTCAACAATAATCTCAACTTATTTCCATCCTTGTTAATTAGCTGTTAATTAATTCAATTAATTATCAGCTCAAAGTCAAAACCCTTCTCTGTTTTCCCAAATGAAGATCAAATTTGCTTTCTTGTTAGCCATTTTGCTTCTTCTTGCCAACACTCATCAGCTCCAAAGTTGTAGAACCATGAATGAGGATCGACAAAAGTGGTCGACGGAGCTACTTCTTCGGCAGTCTCTGCAGAGGGCACCGGTCCCTCCCTCGGCCAAAAACGGTGGCACCAATATCCCGGTACCGGTCGGGCAAAGGGCCTTCGCCGGGAAATCTACAACTGATCATGTACTGGTTCCTTTTGGTGTGGCCTTGAACACAAACTAA

mRNA sequence

ATGGTGGCACCAATATTCCGGTGCCGGTCCGGCAAAGGGCTTACGCCGGAAAATATATCTGCGGCAGTGCGGGCGCACCTCTACTACATAGATAAGTCCGAGCTGATCCTTTTGATCAAATTTGCTTTCTTGTTAGCCATTTTGCTTCTTCTTGCCAACACTCATCAGCTCCAAAGTTGTAGAACCATGAATGAGGATCGACAAAAGTGGTCGACGGAGCTACTTCTTCGGCAGTCTCTGCAGAGGGCACCGGTCCCTCCCTCGGCCAAAAACGGTGGCACCAATATCCCGGTACCGGTCGGGCAAAGGGCCTTCGCCGGGAAATCTACAACTGATCATGTACTGGTTCCTTTTGGTGTGGCCTTGAACACAAACTAA

Coding sequence (CDS)

ATGGTGGCACCAATATTCCGGTGCCGGTCCGGCAAAGGGCTTACGCCGGAAAATATATCTGCGGCAGTGCGGGCGCACCTCTACTACATAGATAAGTCCGAGCTGATCCTTTTGATCAAATTTGCTTTCTTGTTAGCCATTTTGCTTCTTCTTGCCAACACTCATCAGCTCCAAAGTTGTAGAACCATGAATGAGGATCGACAAAAGTGGTCGACGGAGCTACTTCTTCGGCAGTCTCTGCAGAGGGCACCGGTCCCTCCCTCGGCCAAAAACGGTGGCACCAATATCCCGGTACCGGTCGGGCAAAGGGCCTTCGCCGGGAAATCTACAACTGATCATGTACTGGTTCCTTTTGGTGTGGCCTTGAACACAAACTAA

Protein sequence

MVAPIFRCRSGKGLTPENISAAVRAHLYYIDKSELILLIKFAFLLAILLLLANTHQLQSCRTMNEDRQKWSTELLLRQSLQRAPVPPSAKNGGTNIPVPVGQRAFAGKSTTDHVLVPFGVALNTN
Homology
BLAST of CcUC07G129300 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 70/94 (74.47%), Postives = 77/94 (81.91%), Query Frame = 0

Query: 39  IKFAFLLAILLLLANTHQLQSCRTMNEDRQKWSTELLLRQSLQRAPVPPSAKNGGTNIPV 98
           I+FAFLLAIL++LAN HQLQSCRTM EDRQKWS  LLL+QSLQRAPVPPSAKNGGT IPV
Sbjct: 3   IQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSI-LLLQQSLQRAPVPPSAKNGGTTIPV 62

Query: 99  PVGQRAFAGKSTTD-------HVLVPFGVALNTN 126
           P+GQR+F GKST          V VPFGVA+NTN
Sbjct: 63  PLGQRSFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95

BLAST of CcUC07G129300 vs. NCBI nr
Match: KAG6571505.1 (hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 0

Query: 39  IKFAFLLAILLLLANTHQLQSCRTMNEDRQKWSTELLLRQSLQRAPVPPSAKNGGTNIPV 98
           I+FAFLLAI++LLAN HQLQSCRTM +DRQKWS  +LL+QSLQRAPVPPSAKNGGT IPV
Sbjct: 3   IQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWS--ILLQQSLQRAPVPPSAKNGGTTIPV 62

Query: 99  PVGQRAFAGKSTTD-------HVLVPFGVALNTN 126
           P+GQRAF GKST          V VPFGVA+ TN
Sbjct: 63  PLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMKTN 94

BLAST of CcUC07G129300 vs. NCBI nr
Match: KAG6571501.1 (hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.7 bits (304), Expect = 4.5e-24
Identity = 66/94 (70.21%), Postives = 74/94 (78.72%), Query Frame = 0

Query: 39  IKFAFLLAILLLLANTHQLQSCRTMNEDRQKWSTELLLRQSLQRAPVPPSAKNGGTNIPV 98
           I+FAFLLAIL++LAN HQLQSCRTM EDRQKWS  LLL+QSL+R PVPPSA+NGGT IP 
Sbjct: 3   IQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSI-LLLQQSLKRVPVPPSAQNGGTTIPT 62

Query: 99  PVGQRAFAGKSTTD-------HVLVPFGVALNTN 126
            +GQRAF GKST          V VPFGVA+NTN
Sbjct: 63  QLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95

BLAST of CcUC07G129300 vs. NCBI nr
Match: KAG6571506.1 (hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.6 bits (296), Expect = 3.8e-23
Identity = 62/94 (65.96%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 39  IKFAFLLAILLLLANTHQLQSCRTMNEDRQKWSTELLLRQSLQRAPVPPSAKNGGTNIPV 98
           I+FAF+LAI L+LAN HQLQSCR M  D+QKWS  ++L+QSLQRAPVPPS K+GGT IPV
Sbjct: 3   IQFAFILAIFLVLANVHQLQSCRIMKVDQQKWS--MVLQQSLQRAPVPPSGKDGGTTIPV 62

Query: 99  PVGQRAFAGK-------STTDHVLVPFGVALNTN 126
           P+G+RAFAGK       +  DH+L+P GVALNTN
Sbjct: 63  PLGERAFAGKFMAPPADAYPDHLLIPSGVALNTN 94

BLAST of CcUC07G129300 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-22
Identity = 66/95 (69.47%), Postives = 73/95 (76.84%), Query Frame = 0

Query: 39  IKFAFLLAILLLLANTHQLQSCRTMNEDRQKWSTELLLRQSLQRAPVPPSAKNGGTNIPV 98
           I+FAFLLAIL++LAN HQLQSCRTM ED QKWS  LLL+QSLQRAPVPP+AKNGGT IP 
Sbjct: 3   IQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSI-LLLQQSLQRAPVPPNAKNGGTTIPT 62

Query: 99  PVGQRAFAGKSTTD-------HVLVPFGV-ALNTN 126
           P+GQRAF GKST          V VP GV A+ TN
Sbjct: 63  PLGQRAFVGKSTPSPAHSYHHQVPVPLGVAAMKTN 96

BLAST of CcUC07G129300 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 59/94 (62.77%), Postives = 73/94 (77.66%), Query Frame = 0

Query: 39  IKFAFLLAILLLLANTHQLQSCRTMNEDRQKWSTELLLRQSLQRAPVPPSAKNGGTNIPV 98
           I+F F  AIL+LLAN H LQSCRTM +D++KWS  +L++QSLQRAPVPPS ++G TNIPV
Sbjct: 3   IQFTFFFAILVLLANAHHLQSCRTMKDDQRKWS--MLIQQSLQRAPVPPSTRDGDTNIPV 62

Query: 99  PVGQRAFAGKSTT-------DHVLVPFGVALNTN 126
           P+GQ+AFAGKST        D++ VP GVAL TN
Sbjct: 63  PLGQQAFAGKSTVPPAFPDPDNLEVPSGVALKTN 94

BLAST of CcUC07G129300 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.8e-21
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 0

Query: 39  IKFAFLLAILLLLANTHQLQSCRTMNEDRQKWSTEL-LLRQSLQRAPVPPSAKNGGTNIP 98
           I+F+FLLAIL+LLANTH LQSCRT+ +D+Q WS +L LL+QSLQR PVPPSAKNG TNIP
Sbjct: 3   IQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTNIP 62

Query: 99  VPVGQRAFAGKST 111
           VPVGQRAFAGK++
Sbjct: 63  VPVGQRAFAGKTS 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6571503.11.6e-2674.47hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571505.11.4e-2572.34hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571501.14.5e-2470.21hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571506.13.8e-2365.96hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571504.11.9e-2269.47hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3B7771.7e-2162.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LCY53.8e-2176.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC07G129300.1CcUC07G129300.1mRNA