CcUC06G128400 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G128400
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	protein P200-like isoform X4
Location	CicolChr06: 30301058 .. 30301856 (-)
RNA-Seq Expression	CcUC06G128400
Synteny	CcUC06G128400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAAGAACAAACCATTAGTCTGCTAATGAACAACTCAGATGCTGAGGAAGAAGAAGATGAAAAAGCAAATTGCATTGAGAGGCAAATTGTGGAGAAAAATGATCTGAGCCTGAGACAGCTGAAGAAGATGTTCAAGGAGAAACTCCAACTTAGCAAAAAGAAGGACAATAATAACATCAACAGAAAAGTTGTTGGAGGTGGGGGGAGGTGAGAACTGCTTTACAGCCAGTGTCAGAAAACCGAATAATCATGGATGAATTAGAGAAGAGATTTTGAAGTCTTGAAGAGAATTGTGCATGGTTCAAACTGCGGTTTGCCTCATGTTCTTTGTGTTTTTGAATTTTTGTTTCATTTGTGGGGTTTTATATTCCATGATGTTTTTTGAGAGGGAAAAATGAGGTAAACAATTAGTTTGTCTGATTTTTGTTCATCATCAGTTTAATAATGAAATGCCATGCAGTCTGTGTTTCAGAAAGAAAAATAGGATCACAAGTAAAATTTACCGAAAAAACAATCAACAGTTTCCTTAACCAATGATCTCAATTAGGGATGAAAATTTACTTAGAATCAAAGTAGAACTATTGGAAGTTTCTAACAGCTTTCTAACTCTTTTCTTGATTTTCTATTCAATTATATGGAGCTGTTTCCAACTTACGACTCTTCTTCCACAACGAAAATTCAATACAGATCAAGAACTTGAGCACGACCGTGCTAATCTATCCTTTTAAACAAGGATCTCTAAATATCTAGCCAGACCAGGACAAGAACCCGTTAAAATATCCAGAAACATGTAATCGG

mRNA sequence

TTAAAGAACAAACCATTAGTCTGCTAATGAACAACTCAGATGCTGAGGAAGAAGAAGATGAAAAAGCAAATTGCATTGAGAGGCAAATTGTGGAGAAAAATGATCTGAGCCTGAGACAGCTGAAGAAGATGTTCAAGGAGAAACTCCAACTTAGCAAAAAGAAGGACAATAATAACATCAACAGAAAAGTTGTTGGAGGTGGGGGGAGTTTAATAATGAAATGCCATGCAGTCTGTGTTTCAGAAAGAAAAATAGGATCACAACCAGACCAGGACAAGAACCCGTTAAAATATCCAGAAACATGTAATCGG

Coding sequence (CDS)

ATGAACAACTCAGATGCTGAGGAAGAAGAAGATGAAAAAGCAAATTGCATTGAGAGGCAAATTGTGGAGAAAAATGATCTGAGCCTGAGACAGCTGAAGAAGATGTTCAAGGAGAAACTCCAACTTAGCAAAAAGAAGGACAATAATAACATCAACAGAAAAGTTGTTGGAGGTGGGGGGAGTTTAATAATGAAATGCCATGCAGTCTGTGTTTCAGAAAGAAAAATAGGATCACAACCAGACCAGGACAAGAACCCGTTAAAATATCCAGAAACATGTAATCGG

Protein sequence

MNNSDAEEEEDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKKDNNNINRKVVGGGGSLIMKCHAVCVSERKIGSQPDQDKNPLKYPETCNR

Homology

[Close]

BLAST of CcUC06G128400 vs. NCBI nr
Match: XP_038906922.1 (interaptin-like isoform X1 [Benincasa hispida])

HSP 1 Score: 91.3 bits (225), Expect = 4.9e-15
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MNNSDAEEEED----EKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINRKV 60
           M+NSDAEEEED    EKANCIE+QIVE ND+SLRQLKKMFKEKLQLSK+K DNN+IN KV
Sbjct: 655 MDNSDAEEEEDGKEQEKANCIEKQIVETNDMSLRQLKKMFKEKLQLSKQKMDNNSINSKV 714

Query: 61  VGGGGSL 63
           VGGGG +
Sbjct: 715 VGGGGKV 721

[Close]

BLAST of CcUC06G128400 vs. NCBI nr
Match: XP_038906923.1 (interaptin-like isoform X2 [Benincasa hispida])

HSP 1 Score: 91.3 bits (225), Expect = 4.9e-15
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MNNSDAEEEED----EKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINRKV 60
           M+NSDAEEEED    EKANCIE+QIVE ND+SLRQLKKMFKEKLQLSK+K DNN+IN KV
Sbjct: 652 MDNSDAEEEEDGKEQEKANCIEKQIVETNDMSLRQLKKMFKEKLQLSKQKMDNNSINSKV 711

Query: 61  VGGGGSL 63
           VGGGG +
Sbjct: 712 VGGGGKV 718

[Close]

BLAST of CcUC06G128400 vs. NCBI nr
Match: XP_008467303.1 (PREDICTED: probable beta-tubulin polyglutamylase [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 7.4e-11
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   MNNSDAEEE---EDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINRKVV 60
           M+N DAEEE   E  KA CI  QIVEKND+SLRQLKKMFKEKLQL+KKK DNNNIN KVV
Sbjct: 573 MDNLDAEEEDEKEQNKAKCI--QIVEKNDVSLRQLKKMFKEKLQLNKKKMDNNNINTKVV 632

[Close]

BLAST of CcUC06G128400 vs. NCBI nr
Match: KAA0055115.1 (putative beta-tubulin polyglutamylase [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   MNNSDAEEE---EDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINRKVV 60
           M+N DAEEE   E  KA CI  QIVEKND+SLRQLKKMFKE+LQL+KKK DNNNIN KVV
Sbjct: 573 MDNLDAEEEDEKEQNKAKCI--QIVEKNDISLRQLKKMFKEQLQLNKKKMDNNNINTKVV 632

[Close]

BLAST of CcUC06G128400 vs. NCBI nr
Match: XP_022928801.1 (uncharacterized protein LOC111435613 isoform X2 [Cucurbita moschata])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1   MNNSDAEEEEDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK--DNNNINRKV 56
           M+NSDAEEE    ANC ++Q VEKND+SLRQL+KMFKE+LQLSKKK  +NNNIN KV
Sbjct: 488 MDNSDAEEE----ANCTQKQTVEKNDMSLRQLRKMFKEQLQLSKKKMDNNNNINTKV 540

[Close]

BLAST of CcUC06G128400 vs. ExPASy TrEMBL
Match: A0A1S3CT90 (probable beta-tubulin polyglutamylase OS=Cucumis melo OX=3656 GN=LOC103504683 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.6e-11
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   MNNSDAEEE---EDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINRKVV 60
           M+N DAEEE   E  KA CI  QIVEKND+SLRQLKKMFKEKLQL+KKK DNNNIN KVV
Sbjct: 573 MDNLDAEEEDEKEQNKAKCI--QIVEKNDVSLRQLKKMFKEKLQLNKKKMDNNNINTKVV 632

[Close]

BLAST of CcUC06G128400 vs. ExPASy TrEMBL
Match: A0A5A7UN97 (Putative beta-tubulin polyglutamylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00410 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.9e-11
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   MNNSDAEEE---EDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINRKVV 60
           M+N DAEEE   E  KA CI  QIVEKND+SLRQLKKMFKE+LQL+KKK DNNNIN KVV
Sbjct: 573 MDNLDAEEEDEKEQNKAKCI--QIVEKNDISLRQLKKMFKEQLQLNKKKMDNNNINTKVV 632

[Close]

BLAST of CcUC06G128400 vs. ExPASy TrEMBL
Match: A0A6J1EKY6 (uncharacterized protein LOC111435613 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111435613 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.4e-09
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1   MNNSDAEEEEDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK--DNNNINRKV 56
           M+NSDAEEE    ANC ++Q VEKND+SLRQL+KMFKE+LQLSKKK  +NNNIN KV
Sbjct: 473 MDNSDAEEE----ANCTQKQTVEKNDMSLRQLRKMFKEQLQLSKKKMDNNNNINTKV 525

[Close]

BLAST of CcUC06G128400 vs. ExPASy TrEMBL
Match: A0A6J1ELB4 (uncharacterized protein LOC111435613 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435613 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.4e-09
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1   MNNSDAEEEEDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK--DNNNINRKV 56
           M+NSDAEEE    ANC ++Q VEKND+SLRQL+KMFKE+LQLSKKK  +NNNIN KV
Sbjct: 488 MDNSDAEEE----ANCTQKQTVEKNDMSLRQLRKMFKEQLQLSKKKMDNNNNINTKV 540

[Close]

BLAST of CcUC06G128400 vs. ExPASy TrEMBL
Match: A0A6J1ESK4 (uncharacterized protein LOC111435613 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435613 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.4e-09
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1   MNNSDAEEEEDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK--DNNNINRKV 56
           M+NSDAEEE    ANC ++Q VEKND+SLRQL+KMFKE+LQLSKKK  +NNNIN KV
Sbjct: 492 MDNSDAEEE----ANCTQKQTVEKNDMSLRQLRKMFKEQLQLSKKKMDNNNNINTKV 544

The following BLAST results are available for this feature:

BLAST of CcUC06G128400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906922.1	4.9e-15	79.10	interaptin-like isoform X1 [Benincasa hispida]	[more]
XP_038906923.1	4.9e-15	79.10	interaptin-like isoform X2 [Benincasa hispida]	[more]
XP_008467303.1	7.4e-11	77.78	PREDICTED: probable beta-tubulin polyglutamylase [Cucumis melo]	[more]
KAA0055115.1	1.6e-10	76.19	putative beta-tubulin polyglutamylase [Cucumis melo var. makuwa]	[more]
XP_022928801.1	1.5e-08	71.93	uncharacterized protein LOC111435613 isoform X2 [Cucurbita moschata]	[more]

BLAST of CcUC06G128400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G128400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CT90	3.6e-11	77.78	probable beta-tubulin polyglutamylase OS=Cucumis melo OX=3656 GN=LOC103504683 PE...	[more]
A0A5A7UN97	7.9e-11	76.19	Putative beta-tubulin polyglutamylase OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1EKY6	7.4e-09	71.93	uncharacterized protein LOC111435613 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1ELB4	7.4e-09	71.93	uncharacterized protein LOC111435613 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1ESK4	7.4e-09	71.93	uncharacterized protein LOC111435613 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CcUC06G128400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G128400.1	CcUC06G128400.1	mRNA