CcUC06G127920 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G127920
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr06: 30005768 .. 30008063 (-)
RNA-Seq ExpressionCcUC06G127920
SyntenyCcUC06G127920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAAATTACGTTTTTAGTGTCAACGGCCGATCAGGGCTTCGTTTTCAAGCAGGGAAGAAAAGCACAGTTTACGCGCGAAATGAAGAATGGGATCGCAATCTGAATCAATTATACTCTCCTCAACAATGGCGCTTTCTCAGTTTCCAAACAGTTCATCATGGAAAGTAAGTTCTATGAATTTGTTTCGTCTGTACTTCTTCAACTTTGAACAAAATTTGAAATAAGAAGGTCACAACCCATAGGGTAAAGTATGTTGTTCTTGTTTAAGATGATTACCAATTCTTTATCTGTATTAATTACATGCAAAATCAGAGAGGTAGCATCCGGTGTCTCCTTACAATCGCACATCATTGTTGTAAAAAAATGCATAATCGTTGGCCCGAGTGAAGAGTCTGGCAAAAAGTTAGATTCAGAAGATACGAGAGCGAAAAAAATCCCAAACCCTTGTAAAATATTTTGCTCCTAAACATAGTTCTGTCTCAGTTAGTTGACTTGAATATTACTTGGTGGAATTCTTTTATGTTGGAATGGGAGGACTTGGAGTTTTGCGTGCTTCTTACCAAGATCATTAGATTCACTAGACACCTCATATAATAGTTCTCAATACTTCAGCAGTTTAGTACTTGTGCATTCATGGCAGGTTGATTTAATAGGCATCTAGAATCCCTGTCTAGAAGCTTTCTTTCAACTTAATTTTTCTAAGTTATTGTGATTTCAGTCCCCTGGTTAAGCTGTTCCTTTATCTAGGTTCCTGACCGAATGGTATCTCAAAGAATGTTGTTCGTTGGTGGTTTTTCACATATATGAATTTAAAGCTTATTGCTTGATTTACTAATAGCTACAGTTGCTTATTCTTTTTATCAAGCCTAGATTTGCTGCTTCAGCTAAATATTCAAGATCGATGGCTCTTGCCATCGTTTGCCATATCACCAGCTTACTTTTTTTCTATTGTCATAATTGTTTATCTATCGTAGAGCATCAACTGAAGATTGTAAATGGGCAATTGTCTTGCATACAATAGAAGAGTGTTGATTCAAAATTTTCATTTACTGTCTTAACTCTGAAGCCTGGTCATGTGAGACGTCGTTTCCAACTGCAGTTCATAGTTAGCCATTTACTCGTGCTTCATCTGAAACAATTTAAAGATATGATAAAGCACCGATCATTCACATTCTCAAAACCCATTTTTTTAATCACAAATTTAAAGCTAAGTAAACCAAGATGTTGGTTCTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAATTGGACATGGATTATAGGACTAACTGTTTCTTTTGCTCATAAAATTAAGTCTACTTATTTCTATCTGCGTTGAGAAACTTTAGTACTTTTTTCTGAGTATTTTCTTAACAGTTGTAACTAGAGGTCATCTGATCCCGTTTACAGCTTGCAACTCTTGACATAGAATTTTTTGATGTTTAAAACCTCTGATCAAGCATTATAATGTTCCATAGTTGCAGTCCGATCAAGTTTTCCCAATGTTCAAAACCTCTGATAAGTTAGCTCATTTGATTGAGCTTCTTGTCATCAACAGCAGTTGCCTCGTCCTGCAGCTTATATGACGAGAATCCTCTTGCCTCAAGGTCTGATTTAATATAAACGAGACTGATAAAGATCTTATAAAAAGTTCTAATGATTCTTACTTTGCTTCCAGGCCTATTTTTCCATATTGTTCCCGCAACCAATACCTCTGACAGTGAAGAGTCTTCTTCCAGAGCTAAGTGCTACAAAGTGAGGAAGATGTCAAGTCTGAATTTAACTGAAATGAAGGTGTTCGTACTGAGATTGAAGATGAATATGGCCCCAGAAGGTGATTCATTTCCACAGCCTGAAAATGCACAAACAAATTGCAGATTATGGCAAATTTGCTTCAGGCATCCACCAAATAAAGGACGGACATAGAGTAGCAAGTTCTAGTAATTCTGACCATAATGCAGATGATGATGAGCAATCTCAAGTGAGCCTTCAAGTTCAGGGACATAAAGCACACAAAATACCACCTCAGGAAGCTGGTGTACTTGAATATGGGGGATTGTTAAACTGCTGA

mRNA sequence

AGAAAATTACGTTTTTAGTGTCAACGGCCGATCAGGGCTTCGTTTTCAAGCAGGGAAGAAAAGCACAGTTTACGCGCGAAATGAAGAATGGGATCGCAATCTGAATCAATTATACTCTCCTCAACAATGGCGCTTTCTCAGTTTCCAAACAGTTCATCATGGAAACAGTTGCCTCGTCCTGCAGCTTATATGACGAGAATCCTCTTGCCTCAAGGCCTATTTTTCCATATTGTTCCCGCAACCAATACCTCTGACAGTGAAGAGTCTTCTTCCAGAGCTAAGTGCTACAAAGTGAGGAAGATGTCAAGTCTGAATTTAACTGAAATGAAGGTGTTCGTACTGAGATTGAAGATGAATATGGCCCCAGAAGGCATCCACCAAATAAAGGACGGACATAGAGTAGCAAGTTCTAGTAATTCTGACCATAATGCAGATGATGATGAGCAATCTCAAGTGAGCCTTCAAGTTCAGGGACATAAAGCACACAAAATACCACCTCAGGAAGCTGGTGTACTTGAATATGGGGGATTGTTAAACTGCTGA

Coding sequence (CDS)

ATGGGATCGCAATCTGAATCAATTATACTCTCCTCAACAATGGCGCTTTCTCAGTTTCCAAACAGTTCATCATGGAAACAGTTGCCTCGTCCTGCAGCTTATATGACGAGAATCCTCTTGCCTCAAGGCCTATTTTTCCATATTGTTCCCGCAACCAATACCTCTGACAGTGAAGAGTCTTCTTCCAGAGCTAAGTGCTACAAAGTGAGGAAGATGTCAAGTCTGAATTTAACTGAAATGAAGGTGTTCGTACTGAGATTGAAGATGAATATGGCCCCAGAAGGCATCCACCAAATAAAGGACGGACATAGAGTAGCAAGTTCTAGTAATTCTGACCATAATGCAGATGATGATGAGCAATCTCAAGTGAGCCTTCAAGTTCAGGGACATAAAGCACACAAAATACCACCTCAGGAAGCTGGTGTACTTGAATATGGGGGATTGTTAAACTGCTGA

Protein sequence

MGSQSESIILSSTMALSQFPNSSSWKQLPRPAAYMTRILLPQGLFFHIVPATNTSDSEESSSRAKCYKVRKMSSLNLTEMKVFVLRLKMNMAPEGIHQIKDGHRVASSSNSDHNADDDEQSQVSLQVQGHKAHKIPPQEAGVLEYGGLLNC
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G127920.1CcUC06G127920.1mRNA