CcUC06G126480 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G126480
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CicolChr06: 28762763 .. 28766031 (+)
RNA-Seq Expression	CcUC06G126480
Synteny	CcUC06G126480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGGCCAAGTGTATTGAGTCCTGGCAATGCAAAAACATCTCCTGGTGTGAGGCCAAAACCAAAAGGATTATCTGGGTTGCCTTCTTTACTCAATCCATCAAAGAAGAAATCATCTGCAGTAACTTCTGAAGCTGGCTTGCAAGGAAAACCACTAAGGGAAACAGTTGCATTTAAATCAGCAACACAGAAGTCCTGTAACGGATCGGGGTCGGTCGACGAAGAAGGATAAGGAAGAAGCAAGAGTATAATAATGAAGGAAGCAAGCATATTTAGAGGTGAGCTTTCCAAAGAAATCATTGTTTGGAGAAAGAAAAGATAGTTAGGTGAAGGGTTGTCAAGGGAGGTAGTTTTAAACCGTTATTGTAGAGTTGACTTAAATAGTGTTCTAAATAATTGGCTGCGGCCTTCGAATCATTTTTCTCAAGTAAGATCTCTATGGAAAAATTTTATGAAGTGAGGATCCTAATCTGTTGGCGACCCTTCCTAAGCCGATGTTACAAATAATAAAAGGTAAGAACTAAGATTGACCAAGTTTTATTTCTGAAAATTTGTGAGGGCTAGTTGGATCTCGACCATAAAGCCAAGGTTTTCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTGTGGAGAAGGAAACTGTATGGCATTTGGGAGGCTGGGTGGAGTTGGATGGATAGTTAATTAGTTTGGGGTACAAGAGTGAAATTTGGAGTCGCGGTTGACCCATCGACTTTTATAAGTTAGTGTTAAATAACTCAACTTCATAACTTTAACAATGTTTACTATTGAAGTTTGCATATTTTTCCGAGAATTCCTATCTTCCACTTTTTCTCTCTTTTGCACATTTATCAAAGAAGTCTAACTAAGTAATTTTGCACTTTAAAGACAGACTTCATAACTCAACTCAACGCCCCAAATACTCTTGAGAAGTTGTGAAGTTTATTAAAAAATTCCAATACTAACAAATATAATTTTAAATTTGTGAAGTTTATATATGTTTTCTTTATCATAGACATAGGATCATCAAAATGAAATTCTATGTTTAGGCTTTTTGAAAACTGTGAATTATCCAACTATTTTGATTATCATGTTCTAACCTAATATGTGAACTTAAGTGGCTAGTTTAGATTAATAATAAACATTAAATTAATAAAAGCAAATGAAATTATAGGTTGAGCAAGTAAGTATAACACTTTTATTCATTCCTTAGGGTATCTACATATTTGAATTCCCAATAAATGTTAGTTCATGATTGATGAAAAGGAAAGAAGTAATACAATAGAACGTAAATGACATAAAAAATATAAACTAAGGGGAAAATATAGAAGAAAAGACTTAAAAAATCTCTCTAGAGATCCCTTTTATCTAGTTTGATTCAATATTTTTCGAGATGAATACAACCTTTACGCTTATTCTTTCAATATGAGTATTCAAATAAGGCTCAAGATAATAGAGAGAGTGTAGCAACAATCTTCAAGGGTCAAACAAAAGTTAAAATATGGAATTGATGATTTTTCAAAAAAAAAAAAAAAAAAAAAAGAAAACAACAACAAAAAAAAAAAAAAAGAAAACAACAACAAAAAAAAAAAAAAAAGAAAAAGAAAAAAAAGATCAAAGGGATTGAGGCTTGGTGAACTGGACAGCTTTTGCACCAAAACATAAAAATTTGTCAAAACATTCAAAACTCTTACTCTTTTTATACTAGAACGCCTCTATTTGATAAATCGAGGTTAAAACACGTGTTCTATTTGTTTTTATTATAACTCTCATCAATAAACACATAAATTCATAATCTTTTTGTGACAATGTATGGGGAGGGAGAATCGAATATCTTACTTCGAGAGTACTATGCTCATTTTGACATAAGTTTATAACCTTACATTTTTTAGGTAAATAACTTTCATATTGAGAGTTATGAATGAATTTAATCTAAGCTGAATAAATTTCAGAATGTTACCATCAAGCTTTGAATAACAAGTTGCCCGCTTTCAATCCAATATTGTTGGCATAATTACAAAGTTCTTTTTTTTTTTTTAATTTTTACAAACTCTCCACAATATCAAATTTCAAAATCAATTTTTATTTTATTTTTTCATCCACTAAAAACTATTAAATTTCAGCTACTCAATTGAAACTAAAGAATTAAAAATAGTAAGGTGAGAATTACATTAAATAGCTTAAAATAATTTGTAACACTCAAATTCAAGAGGTAGATGAATGAGCCAAGATCAAACACAAATGATAGGAGTCCTGAAATATAAATGTATATTATTATCTATAACAACAAGGTGCGCCTTCCTTTTAGTGACCCAATCTTGGAAACTCTAAAGTTCAACATGAGCAATTTTATGTTAGGTGACTCCTGAAAATTTTTCTAGAAAATATGTGAATGAGAACAAAACATCATGAAAATATCTGTATTGATTTGTGGGAATAATCTTCACTCTTAAAGCAGTTTAAGACAATGATGATGTTACCAAATTGCAGGGAATGGCTATCAAGTACGGAATCCTAATTTGAATCGAGGTCTAGGACATTACATAACCTTCTTTTTCTTTTTCTTTTTCTTTTTTTTTCGTTTTTAAAAAAATCATTACAATCAATCTTATTTTTCATTTTGTCAAAGAATTTATGGAAAAAGAAAGTTTATTTTTGGAATATAGACATTTAACACATTATTTCTTAAGTGAAAAAGTAAAAAAGAAATCAAATGCAATATATATACAGTTGTATTATATGCAGAAACTGAAGCTACTTCCAATTTGTACTTCAGTTGTACTGGAGAAAACATAACTAATCTTCCCTTACAGCTCTTAATTTTATTTGCTGTCATGAAAAGTGAATCCTAG

mRNA sequence

ATGGATAGGCCAAGTGTATTGAGTCCTGGCAATGCAAAAACATCTCCTGGTGTGAGGCCAAAACCAAAAGGATTATCTGGGTTGCCTTCTTTACTCAATCCATCAAAGAAGAAATCATCTGCAGTAACTTCTGAAGCTGGCTTGCAAGGAAAACCACTAAGGGAAACAGTTGCATTTAAATCAGCAACACAGAAGTCCTAAACTGAAGCTACTTCCAATTTGTACTTCAGTTGTACTGGAGAAAACATAACTAATCTTCCCTTACAGCTCTTAATTTTATTTGCTGTCATGAAAAGTGAATCCTAG

Coding sequence (CDS)

ATGGATAGGCCAAGTGTATTGAGTCCTGGCAATGCAAAAACATCTCCTGGTGTGAGGCCAAAACCAAAAGGATTATCTGGGTTGCCTTCTTTACTCAATCCATCAAAGAAGAAATCATCTGCAGTAACTTCTGAAGCTGGCTTGCAAGGAAAACCACTAAGGGAAACAGTTGCATTTAAATCAGCAACACAGAAGTCCTAA

Protein sequence

MDRPSVLSPGNAKTSPGVRPKPKGLSGLPSLLNPSKKKSSAVTSEAGLQGKPLRETVAFKSATQKS

Homology

[Close]

BLAST of CcUC06G126480 vs. NCBI nr
Match: KAF5476902.1 (hypothetical protein F2P56_003592 [Juglans regia])

HSP 1 Score: 57.8 bits (138), Expect = 4.2e-05
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 25 LSGLPSLLNPSKKKSSAVTSEAGLQGKPLRETVAFKSATQKS 67
          L  LPSL+NPSKKKSS VTSEAGLQGKPL +  AFK A QKS
Sbjct: 2  LDVLPSLVNPSKKKSSEVTSEAGLQGKPLTDIEAFKFAMQKS 43

[Close]

BLAST of CcUC06G126480 vs. ExPASy TrEMBL
Match: A0A2N9FTS7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18447 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 4  PSVLSPGNAKTSPGVRPKPKGLSGLPSLLNPSKKKSSAVTSEAGLQGKPLRETVAFKSAT 63
          P VLS GN +T   V  +PK    LPSL++PSKK+S A T EAGLQGKP  + VAFKSA 
Sbjct: 14 PRVLSSGNERTFAAVTFEPKMFVVLPSLVSPSKKRSFAFTFEAGLQGKPFTDMVAFKSAI 73

Query: 64 QKS 67
          QKS
Sbjct: 74 QKS 76

The following BLAST results are available for this feature:

BLAST of CcUC06G126480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5476902.1	4.2e-05	76.19	hypothetical protein F2P56_003592 [Juglans regia]	[more]

BLAST of CcUC06G126480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G126480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9FTS7	2.2e-07	60.32	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of CcUC06G126480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G126480.1	CcUC06G126480.1	mRNA