CcUC06G126400 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G126400
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRNase H domain-containing protein
LocationCicolChr06: 28706844 .. 28709929 (-)
RNA-Seq ExpressionCcUC06G126400
SyntenyCcUC06G126400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAAGGTGTAGGAAGCACCGCAGATACATTGAATCCAAATTCCAAGGGCGGTTGCAGTCCATTTGTTGGGCATAAACCCAGAAACTTCCATCTCCGGCGGTGGGTAATTTTTCTGGTTCTGGTTGTTCGTAGGAGCAAATGCGAATCATTTCCGTGTTGTAGAAGAAGATCTCATATTTGTTGTTCTTACTTCTCCCAACAAATGAGGCCACGCAATGCATTGGTTTGCTACGTGGGCCATCGTTGGCACTTCCTATCATCATTTTTCTTGACGTTTTTCCTAATTTGGCTTATTGTTGTGTGTTTAACTTTTTTCATTGGCTTTTATTTGGTTCTACCCTTTTGGGAAAGTTGGTGGAGTTGATTTTATCCATTATTCTTGGAGAGTCTGAGTCAGCTAAGGTATTTAAATAAGTTATCAATATCTTCATCATCTTCTTCAATTGGATTTATTTTCATTATTCGTTATCTTTACCCTTTATTTTATCATCTATTATTATTTTCCACTATACATTTTTAATATGTATTCACATTTGCCTGTTTTTAAATAGAGCAAAATGAACTAAAACAAATAATTCAAAATCAGTAGGTGATTTTAGGCCTATTAGTCTTGGCAATGAGAGTTATGAAATTAATTGTGTAAAAAACAATAGCTAATTGTCTAAAACTTGTCCTTCATAATATTATCTCAGACAACCAATCAACTTTTGTACCAGGGAGGGCAATTACCGATAATGTTATGATAGACCATAAATTTTTAAACTTCATTCAGAATAAGAAAAAAAGAAAAGAGGTTTTGGCTGCTGTTAAACTAGATCTAAACAAAGCATATGATAGAATTGAATGGTCTTTTCTCATAGCTATAATGACTCGATTAAATTTTGACCAAAGAGTCTCCTCACTTATTTACAATTGCATTTCTTCCACTAATTTTGCTGTTCTTGTTAATGGTGATCCTAGCAAATCCTTTCAACCTAGCGGACGGCTGAAACAAGGCGATCCTCTCTCCCCCGATCTTTTTCTTTTAGTGGTAGAGGGCCTTTCAGCTCTCTTAAACTCTCAGCAATTGGGAGGGAACATTCCCGGTGTATCACTAGGTGCTCATTGCCCATGTATTTCTCACCTTCTATTCGTTGATGATAGTTTAATTTTCTACCGGGCAAATGAATATTGACTTCTCTGTTTTGAAGAACCAACTAAGCAGTTTTGAAGCTGCTTCGGGAGCTAGGATTAATCAAGCAAAGTCAGCAATCTTAATATCTCCGAACGTTAATGAGGACAGAGGTCTATTCTTGTGTGGCATCTTGGGCGTCCTAAAGGTTAAAGAGTTGGACCATTATCTAGGCCCTCTTTGTTGTCAAGGAGCAAAAGCATGAATTTTCAATTCCTGCTGGACTAGATTTGGAAGTCTCTTCAAGGGTGGAAAAGAATTTTTTTTTCTACTTGAGGGAAAGAAATATTTATCAAAAGTGTTGGTCAAGCCATCCCAACTTATGGAATGAGCATTTTTAAACTCCCTAAACAACTATATTCGGAAATTACCAGGGTTTTCTCAAGATTCTAGTGGGGTTCAATAGAAAAGAAAAGAAAGATCCACTGGATCAAGTGGCCGGATTTGTGCCTCCCAAAAGCTTAAGAGATTTAGAAGGTTTTAACAGAGCATTGATTGCAAAACAAGTGTGGCGAATTCATCAGGACTCAGATCTTCTAGTTTCAAAGGTGCTCAAAAGTATTTATTTTAATCATTGTGATATTTTGAATGTTGATATGGGTAGTAGTACATCACATATGTGGAAAAGCTTACACTAGGGAAGTACTTTTCTCAAGGAAGGTCTGCGTTTTAAAGTGGCAAATGGAGCTTCTATCAGAATGTTTAAAGATCTATGGTTACCAAAAGAATGCACTTTCAAACCAAGATGTATAAATATGGATTTCTTTGAGGCAAAAGTAGCTGATTTTATAACTCTAGAGGGTGCTTGGAACACTGGCTTGCTGACTATTGCTACCTCATCGGAAGATACTGCTGTTATAAAAAAAATCCCACTTAACCTGAGGATGGAAGACAAGCTGATTTGGCACTATGACAAGTATGGGAAGTACTCAGTAAAGTCAAGGTATAAATGGTTTCAAAGATCGAGATTCTGCTCTAGTTCTTCCAGTGAGAGCTTATTGAAAGTCCTATGGTCAAAGTTATGGAAGCTAAATGTGCCTCTAAAGATCAGACATTTTATCTGGCGAACCCTAAAGAATATACTTCCCACTAGGACAAACTTACCCAAAAAAAAAAAAAAAAAGGATTGAAATTGTACCTATTTGCCTTGTTTGTGGTCAGCATCAGGAAATTGTCGATCATGCTCTTTTCTCTTGTGAAAGAGCAAAATCAATCTTGAAGAAACTTTTGGGTGAGAAAGTTACAAATTTAGACTTTAATGGCAGCTTCATTGATAGATGGCATAACTTGGTGACTGCTTGTGAGGCAAGCAAAATTGAGCTTCTACCCACGTCTTTCTGGGCTTTTTGGAATGATTGAAATAACCTAGTAAATGGCAAGTCCATCCTCCACCCAGATCTCAAAGCCTCATGGATTATTAGATATTGTGAGACATTCTGGGATTCATCCCACTCCAAGCTTATTGGTGTTGCTTTGTTAGCCAATCCTTGTGGTATGAACTCATCGTGGCTCCCTTCTCCGTGGGGTTTTGTTAAAATTAATAATGATGTCTCTTGGAGCCCCCTTTCCCCTTCGGTGGACCTGGGCATTGTCATCAGAGATAGTTCGGGGGCTATTAAAGTCATCTCTGCCAAAAGTTCTCATTTTGGCTTTGATTGCCCTTCAGCGGAAGCTTTGGCAATTAAAGAAGGATTAATGTTGGCTTTATCATTAGAATTTAGAAACATCATTGTTGAAACTGACTACCTCCAAGTGATAAATCTGATCAGAGGTCTCACACAGTCGGATGCGAAAATCTCTTGCTGGATTGAGAACATGGTTGCTCTGAAAGATAGTTTCAATTCTTGTTCTTCCGTTTGCACTCCCAGAAGTTATAATTCCTTAGCTGATGCAGTAGCAAGGTTTGCGTGA

mRNA sequence

ATGCTGAAGCATCAGGAAATTGTCGATCATGCTCTTTTCTCTTGTGAAAGAGCAAAATCAATCTTGAAGAAACTTTTGGGTGAGAAAGTTACAAATTTAGACTTTAATGGCAGCTTCATTGATAGATGGCATAACTTGGTGACTGCTTGTGAGGCAAGCAAAATTGAGCTTCTACCCACATATTGTGAGACATTCTGGGATTCATCCCACTCCAAGCTTATTGGTGTTGCTTTGTTAGCCAATCCTTGTGGTATGAACTCATCGTGGCTCCCTTCTCCGTGGGGTTTTGTTAAAATTAATAATGATGTCTCTTGGAGCCCCCTTTCCCCTTCGGTGGACCTGGGCATTGTCATCAGAGATAGTTCGGGGGCTATTAAAGTCATCTCTGCCAAAAGTTCTCATTTTGGCTTTGATTGCCCTTCAGCGGAAGCTTTGGCAATTAAAGAAGGATTAATGTTGGCTTTATCATTAGAATTTAGAAACATCATTGTTGAAACTGACTACCTCCAAGTGATAAATCTGATCAGAGGTCTCACACAGTCGGATGCGAAAATCTCTTGCTGGATTGAGAACATGGTTGCTCTGAAAGATAGTTTCAATTCTTGTTCTTCCGTTTGCACTCCCAGAAGTTATAATTCCTTAGCTGATGCAGTAGCAAGGTTTGCGTGA

Coding sequence (CDS)

ATGCTGAAGCATCAGGAAATTGTCGATCATGCTCTTTTCTCTTGTGAAAGAGCAAAATCAATCTTGAAGAAACTTTTGGGTGAGAAAGTTACAAATTTAGACTTTAATGGCAGCTTCATTGATAGATGGCATAACTTGGTGACTGCTTGTGAGGCAAGCAAAATTGAGCTTCTACCCACATATTGTGAGACATTCTGGGATTCATCCCACTCCAAGCTTATTGGTGTTGCTTTGTTAGCCAATCCTTGTGGTATGAACTCATCGTGGCTCCCTTCTCCGTGGGGTTTTGTTAAAATTAATAATGATGTCTCTTGGAGCCCCCTTTCCCCTTCGGTGGACCTGGGCATTGTCATCAGAGATAGTTCGGGGGCTATTAAAGTCATCTCTGCCAAAAGTTCTCATTTTGGCTTTGATTGCCCTTCAGCGGAAGCTTTGGCAATTAAAGAAGGATTAATGTTGGCTTTATCATTAGAATTTAGAAACATCATTGTTGAAACTGACTACCTCCAAGTGATAAATCTGATCAGAGGTCTCACACAGTCGGATGCGAAAATCTCTTGCTGGATTGAGAACATGGTTGCTCTGAAAGATAGTTTCAATTCTTGTTCTTCCGTTTGCACTCCCAGAAGTTATAATTCCTTAGCTGATGCAGTAGCAAGGTTTGCGTGA

Protein sequence

MLKHQEIVDHALFSCERAKSILKKLLGEKVTNLDFNGSFIDRWHNLVTACEASKIELLPTYCETFWDSSHSKLIGVALLANPCGMNSSWLPSPWGFVKINNDVSWSPLSPSVDLGIVIRDSSGAIKVISAKSSHFGFDCPSAEALAIKEGLMLALSLEFRNIIVETDYLQVINLIRGLTQSDAKISCWIENMVALKDSFNSCSSVCTPRSYNSLADAVARFA
Homology
BLAST of CcUC06G126400 vs. NCBI nr
Match: XP_015383853.1 (uncharacterized protein LOC107176237 [Citrus sinensis])

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-12
Identity = 66/246 (26.83%), Postives = 105/246 (42.68%), Query Frame = 0

Query: 5   QEIVDHALFSCERAKSILKKLLGEKVTNLDFNGSFIDRWHNLVTACEASKIELLPTYCET 64
           +E   HAL  C+ AK + +    E       N   ++    +      S IE++   C T
Sbjct: 221 KETTAHALLLCKAAKKVWRYAPFETCFPDAVNQDMLEIMVEMAKKLTKSDIEVMVAICWT 280

Query: 65  FWDSSHS---------------------------KLIGVALLANPCGMNSS-WLPSPWGF 124
            W   +                            K + + L A     N   W P P   
Sbjct: 281 IWYGKNKFLFEGKKMEPLLTISRVEAVVEAYRRVKQLKLELKATSSSKNQQVWSPPPDNT 340

Query: 125 VKINNDVSWSPLSPSVDLGIVIRDSSGAIKVISAKSSHFGFDCPSAEALAIKEGLMLALS 184
            K+N D + +       LG+VIRDS   +KV + K++ F  D  +AEA A++ GL++A S
Sbjct: 341 FKVNVDAAVNFERQKAGLGVVIRDSCNKVKVAAVKTTLFTGDVKTAEAEAVEWGLVVAKS 400

Query: 185 LEFRNIIVETDYLQVINLIRGLTQSDAKISCWIENMVALKDSFNSCSSVCTPRSYNSLAD 223
             F+ I+VE+D  +V+ LI     S  ++   I  + +L   F + S   TPRS N+ A 
Sbjct: 401 AAFQCIMVESDCQEVVKLINNKEGSRTEVMWVISEIQSLSKDFQNFSCYHTPRSCNTHAH 460

BLAST of CcUC06G126400 vs. NCBI nr
Match: XP_024033146.1 (uncharacterized protein LOC112095446 [Citrus clementina])

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-12
Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 0

Query: 89  WLPSPWGFVKINNDVSWSPLSPSVDLGIVIRDSSGAIKVISAKSSHFGFDCPSAEALAIK 148
           W P P GF K+N D +         LG+VIR+  G I V + KS+ F  +  +AEA A+K
Sbjct: 105 WFPPPVGFYKVNVDAAVHTEQQLTGLGVVIRNPQGQIIVAAVKSTKFQDNVTAAEAEAVK 164

Query: 149 EGLMLALSLEFRNIIVETDYLQVINLIRGLTQSDAKISCWIENMVALKDSFNSCSSVCTP 208
            GL +AL      +I+ETD ++V NL    T S  +I   I ++ + K+ F S S    P
Sbjct: 165 WGLEIALEARLATVIIETDCIEVANLANSKTSSRKEIMWTISDIHSYKEKFQSLSIQHVP 224

Query: 209 RSYNSLADAVARFA 223
           R  NS A ++A+ A
Sbjct: 225 RCCNSCAHSLAKRA 238

BLAST of CcUC06G126400 vs. NCBI nr
Match: XP_015385025.1 (uncharacterized protein LOC107176703 [Citrus sinensis])

HSP 1 Score: 81.6 bits (200), Expect = 9.1e-12
Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 0

Query: 89  WLPSPWGFVKINNDVSWSPLSPSVDLGIVIRDSSGAIKVISAKSSHFGFDCPSAEALAIK 148
           W P P GF K+N D +         LG+VIR+  G I V + KS+ F  +  +AEA A+K
Sbjct: 105 WCPPPVGFYKVNVDAAVHTEQQLTGLGVVIRNPQGQIIVAAIKSTKFQDNVTAAEAEAVK 164

Query: 149 EGLMLALSLEFRNIIVETDYLQVINLIRGLTQSDAKISCWIENMVALKDSFNSCSSVCTP 208
            GL +AL      +I+ETD ++V NL    T S  +I   I ++ + K+ F S S    P
Sbjct: 165 WGLEIALEARLAAVIIETDCIEVANLANSKTSSKKEIMWTISDIHSYKEKFQSLSIQHVP 224

Query: 209 RSYNSLADAVARFA 223
           R  NS A ++A+ A
Sbjct: 225 RCCNSCAHSLAKRA 238

BLAST of CcUC06G126400 vs. NCBI nr
Match: XP_024046732.1 (uncharacterized protein LOC112101057 [Citrus clementina])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-11
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = 0

Query: 89  WLPSPWGFVKINNDVSWSPLSPSVDLGIVIRDSSGAIKVISAKSSHFGFDCPSAEALAIK 148
           W P P GF K+N D +         LG+VIR+  G + V + KS+ F  +  +AEA A+K
Sbjct: 232 WCPPPVGFYKVNVDAAVHTEQQLTGLGVVIRNPQGQVIVTAVKSTKFQDNVTAAEAEAVK 291

Query: 149 EGLMLALSLEFRNIIVETDYLQVINLIRGLTQSDAKISCWIENMVALKDSFNSCSSVCTP 208
            GL +AL      +I+ETD ++V NL    T S  +I   I ++ + K+ F S S    P
Sbjct: 292 WGLEIALEARLAAVIIETDCIEVANLANSKTSSRKEIVWTISDIHSYKEKFQSLSIQHVP 351

Query: 209 RSYNSLADAVARFA 223
           R  NS A ++A+ A
Sbjct: 352 RCCNSCAHSLAKRA 365

BLAST of CcUC06G126400 vs. NCBI nr
Match: XP_015387366.1 (uncharacterized protein LOC107177674 [Citrus sinensis])

HSP 1 Score: 79.3 bits (194), Expect = 4.5e-11
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 0

Query: 89  WLPSPWGFVKINNDVSWSPLSPSVDLGIVIRDSSGAIKVISAKSSHFGFDCPSAEALAIK 148
           W P P G+ K+N DV+         LG+VIR+  G + V + KS+ F  +   AE  A+K
Sbjct: 36  WCPPPVGYYKVNVDVAVHTEQQLTGLGVVIRNPQGQVIVAAVKSTKFQDNVTEAEVEAVK 95

Query: 149 EGLMLALSLEFRNIIVETDYLQVINLIRGLTQSDAKISCWIENMVALKDSFNSCSSVCTP 208
            GL +AL L    +I+ETD ++V NL    T S  +I   I ++ + K+ F S S    P
Sbjct: 96  WGLEIALKLRLAAVIIETDCIEVANLANSKTSSRKEIVWTISDIHSYKEKFQSLSIQHVP 155

Query: 209 RSYNSLADAVARFA 223
           R  N+ A ++A+ A
Sbjct: 156 RCCNNCAYSLAKRA 169

BLAST of CcUC06G126400 vs. ExPASy TrEMBL
Match: A0A2H5Q972 (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_207140 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.1e-10
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 0

Query: 89  WLPSPWGFVKINNDVSWSPLSPSVDLGIVIRDSSGAIKVISAKSSHFGFDCPSAEALAIK 148
           W P   GFVKIN D + +       LG VIRD +G +   + K S F      AEA A++
Sbjct: 303 WNPPQEGFVKINTDAATNSEKNLAGLGAVIRDENGQVTATAIKVSKFHGSVAYAEAEAME 362

Query: 149 EGLMLALSLEFRNIIVETDYLQVINLIRGLTQSDAKISCWIENMVALKDSFNSCSSVCTP 208
            GL +A     +++I+E+D  +V++L+     S ++I   +  +  LK+SF+  S V T 
Sbjct: 363 WGLQVAKDAHVKDVIMESDSQEVVSLVNNRQGSRSEIYWVVLEIQKLKESFDHVSCVYTH 422

Query: 209 RSYNSLADAVARFA 223
           RS N++A ++A+ A
Sbjct: 423 RSCNAIAHSLAKLA 436

BLAST of CcUC06G126400 vs. ExPASy TrEMBL
Match: A0A1R3HC77 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_20291 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.2e-10
Identity = 47/141 (33.33%), Postives = 71/141 (50.35%), Query Frame = 0

Query: 80   ANPCGMNSSWLPSPWGFVKINNDVSWSPLSPSVDLGIVIRDSSGAIKVISAKSSHFGFDC 139
            A P   N  W P P    K+N D +++  S    LG+V+RDS+G I+  + K   F  D 
Sbjct: 1397 AYPVQTNDIWHPPPASVYKLNTDTTYNVDSHEAKLGVVLRDSTGQIRFSACKRISFVADV 1456

Query: 140  PSAEALAIKEGLMLALSLEFRNIIVETDYLQVINLIRGLTQSDAKISCWIENMVALKDSF 199
              +E LAI  GL++A       ++V++D LQ I  I   + S    +C IE +     SF
Sbjct: 1457 MQSEILAIHYGLLVAQLNGIEKLVVKSDCLQAIREIPKGSASTWDSACLIEEIQTFASSF 1516

Query: 200  NSCSSVCTPRSYNSLADAVAR 221
            + CS     R+ N LA ++A+
Sbjct: 1517 SLCSFKHVKRNANVLAHSIAQ 1537

BLAST of CcUC06G126400 vs. ExPASy TrEMBL
Match: A0A1S8ACU2 (Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 61/248 (24.60%), Postives = 103/248 (41.53%), Query Frame = 0

Query: 5   QEIVDHALFSCERAKSILKKLLGEKVTNLDFNGSFIDRWHNLVTACEASKIELLPTYCET 64
           +E ++HA+  C+ AK + K     +   L  N   +     LV      ++ L+   C T
Sbjct: 332 KEDINHAIMVCKAAKKMWKLTPFVEEMQLLDNQDLLSMLQELVNRRSKDELRLIIALCWT 391

Query: 65  FWDS-------------------------SHSKL----IGVALLANPCGMNSSWLPSPWG 124
            W +                         S++++    +  A  A P    + W+P P G
Sbjct: 392 AWHTRNIFVFENKRQDPQISVAKAEAVVESYARVRMTKVQAAAKAIP-AKGAKWIPPPQG 451

Query: 125 FVKINNDVSWSPLSPSVDLGIVIRDSSGAIKVISAKSSHFGFDCPSAEALAIKEGLMLAL 184
             K N D + +     V LG+VIRD SGAI + +   + +  D   AEA A+  GL + +
Sbjct: 452 HFKANVDAAVNKEKNQVGLGVVIRDDSGAIIIAAVNHTKYHGDVAQAEAAAVNFGLQVVM 511

Query: 185 SLEFRNIIVETDYLQVINLIRGLTQSDAKISCWIENMVALKDSFNSCSSV-CTPRSYNSL 223
                 +I+ETD   V++ +     S  +I   I  +     SFNS   +    R+ N++
Sbjct: 512 EASLSPLILETDCQDVVDFVLHNKSSRTEIYWTISEIQQKLQSFNSMVELQKIQRTCNAI 571

BLAST of CcUC06G126400 vs. ExPASy TrEMBL
Match: A0A2P6PKD3 (Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0249781 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 51/139 (36.69%), Postives = 76/139 (54.68%), Query Frame = 0

Query: 85   MNSSWLPSPWGFVKINNDVSWSPLSPSVDLGIVIRDSSGAIKVISAKSSHFGFDCPSAEA 144
            +++ W P P G  KIN D +W+  S S  LG +IRDS GA+    AKSSH      +AEA
Sbjct: 1216 VSAIWKPPPVGMFKINTDAAWNADSLSCGLGTLIRDSKGAVLGGLAKSSH-AMSSLAAEA 1275

Query: 145  LAIKEGLMLALSLEFRNIIVETDYLQVI-NLIRGLTQSDAKISCWIENMVALKDSFNSCS 204
            +AI  GL LA SL   +  +E+D L +I +L+  L+  D   +  +  + A+   F+  +
Sbjct: 1276 MAIVLGLSLASSLSLSSFQLESDSLVLISHLLNPLSSIDWSATQIVSRIRAMAGHFDRVN 1335

Query: 205  SVCTPRSYNSLADAVARFA 223
             + T R  N  AD++A  A
Sbjct: 1336 WLWTSRHANCAADSIAALA 1353

BLAST of CcUC06G126400 vs. ExPASy TrEMBL
Match: A0A5C7H0P0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-08
Identity = 68/248 (27.42%), Postives = 104/248 (41.94%), Query Frame = 0

Query: 6   EIVDHALFSCERAKSILKKLLG----EKVTNLDFNGSFIDRWHNLVTACEASKIELLPTY 65
           E + H L+SC  A  + ++LLG    +++   DF    +  W ++    ++    LL   
Sbjct: 166 ESITHILWSCNSAVEVWRQLLGDDVIQRIVVSDFPSIILSLWRSV----DSVVFNLLIIG 225

Query: 66  CETFWDSSHSKLIGVA------------------LLANPCGMNS------SWLPSPWGFV 125
               W + +S + G A                   LAN            SW     G  
Sbjct: 226 YWRLWTNRNSVVHGSAGWAAADMVTWIDNFANEFRLANELNHKEVLSHQPSWKTPKRGEF 285

Query: 126 KINNDVSWSPLSPSVDLGIVIRDSSGAIKVISAKSSHFGFDCPSAEAL---AIKEGLMLA 185
           KIN D S+   S    +G++IRD  G+   I+A+SS     C S E L   A  EG+ LA
Sbjct: 286 KINCDASFQLRSGKAGVGVIIRDYKGS--AIAARSSPV-LCCSSVEMLEAQACLEGIHLA 345

Query: 186 LSLEFRNIIVETDYLQVINLIRGLTQSDAKISCWIENMVALKDSFNSCSSVCTPRSYNSL 223
           + +    +I+E+D   VI L+   T    ++   I   +AL  S N  S V   R  NS+
Sbjct: 346 IDIGVSGVIIESDAASVIQLLSDQTVPRTELGAIIHTSLALGASVNLLSYVAVRREANSV 405

BLAST of CcUC06G126400 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 7.2e-07
Identity = 33/136 (24.26%), Postives = 64/136 (47.06%), Query Frame = 0

Query: 85  MNSSWLPSPWGFVKINNDVSWSPLSPSVDLGIVIRDSSGAIKVISAKSSHFGFDCPSAEA 144
           ++  W   P+ +VK N D +W   +P   +G ++R+ SG +  + A++     +   AE 
Sbjct: 133 LSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAEL 192

Query: 145 LAIKEGLMLALSLEFRNIIVETDYLQVINLIRGLTQSDAKISCWIENMVALKDSFNSCSS 204
            A++  ++      ++ II E+D   ++NL+         +   +E++  L   F     
Sbjct: 193 EALRWAVLTMSRFNYKRIIFESDAQALVNLLNS-DDFWPTLQPALEDIQQLLHHFEEVKF 252

Query: 205 VCTPRSYNSLADAVAR 221
             TPR  N +AD +AR
Sbjct: 253 EFTPRGGNKVADRIAR 267

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_015383853.11.8e-1226.83uncharacterized protein LOC107176237 [Citrus sinensis][more]
XP_024033146.14.1e-1237.31uncharacterized protein LOC112095446 [Citrus clementina][more]
XP_015385025.19.1e-1237.31uncharacterized protein LOC107176703 [Citrus sinensis][more]
XP_024046732.11.6e-1136.57uncharacterized protein LOC112101057 [Citrus clementina][more]
XP_015387366.14.5e-1135.82uncharacterized protein LOC107177674 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2H5Q9724.1e-1034.33Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_207140 PE=4... [more]
A0A1R3HC779.2e-1033.33Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_20291 PE=4 SV... [more]
A0A1S8ACU21.6e-0924.60Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1[more]
A0A2P6PKD31.6e-0936.69Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6... [more]
A0A5C7H0P01.7e-0827.42Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G34320.17.2e-0724.26Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 96..222
e-value: 2.2E-11
score: 45.9
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 101..222
e-value: 8.0E-22
score: 77.4
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 85..222
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 99..220
e-value: 1.09399E-19
score: 79.2804
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 96..222

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G126400.1CcUC06G126400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity