CcUC06G126320 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G126320
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Proton-dependent oligopeptide transport family protein
Location	CicolChr06: 28628616 .. 28633403 (-)
RNA-Seq Expression	CcUC06G126320
Synteny	CcUC06G126320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGTGAACGCCTCCGACAACCCAATCAGCGTCAATTGAGGGACCAACCAGAGCGCCGACATGGAAGAAACTGCACCCCTTCTCCCCGTTTCTTCGCACAACGGCTGTGTAAGGCCTAAATTCCTCCTCTTTTGTTCCACTAATGCTGAGATAAACATTGTTACAATGGCGATTCCCATTCCGAGGCCCATTTTTTGTAGGAGCGTAATGCCGCCTTCTCTGGCGGTGATTCGGCGGAGCGAAGGGACTAAGATTCGGTCGTAGAAAGGGATCCAGATAGTGAGGCCAATCATGGTGAAGATTGTGTAGGAAGCGGCTGGGATTTTGAAATAATGGGTGTTCCCGAAGAATAAGCGTCTATCGGATTGGAGTGCTTGAAATACAACGTACGTTTGTTGTTGTGTTGTAGCGACATGGTATAGTATGGCTGCACCCCATATTGGTATTACTCTCACTAAGCATTTTACTTCTTCTACTTGTTGTGTGCTGCAGAGTGTCCATGGATCGGCTGCTGATCCGTCTGACTTGAATTTGTCTTCTGGGGTTATGATTGCTGCCTTGTCTAAGAAGCTGCAAGCAATATAGGGTAAGGTTTTGTTAAAGACTTAAAAGCTTTGAAAATGGAAGTCTACCTGAATTGATCTGTGTAAGGAAGCTTGGAATTGATGGAGTTTGCGGGAATGTGGTTAAAAAGAGATGGCCATTGCTGGTCTGGCAATGGCAATTGCCTTTTCTTGAGAGCAGCCATTAGAACTCGCATTACACTGGTGAAAGGACTCCCATCAGGTTCTAATTTGACGTAAATCCAGGAACCCATGAAGAAAAGTGCACAGGATAGGAACATAAGGAAAGCAGGAATGGCTAATCCCCAAGCCCAGCTCACTTCAGTTTGGACATATACAATGATGGTTAAAGATACCATCATGGCAAATGTGAAGGTGAAGTAGTACCAATTGAAGAAGCTGTTTATTCCTAACTTCCCTGAGGCTGTGTTGGGATTGAATTGATCTGCTCCAAAAGCCAAGTTGCAGGGTCTGATTCCACCAGCTCCGATTACAAGCAGTCCTAACCCAAATAACAGAAATGCAATCTGCCATGGCGTTGCCTCTAGGCAAGGCCCGCCTGCACTGCCCTTTCCACAATCTGGTGGGTGCAACTTCGCAATTGACGCTGTCAGTGTTAGTATAACCATCCCCTGTGTGAGTGATCAGTGACATGAAAACAACCAATTTAGCGAATTAGTGAATTTGTATATATATATGTGCGCGCGCACATTTGAACGTTGTAAAGGCTCATTTGGAATGATTTTTTAAGTGCTTAAAAACATTTTAAGCGTTTAAAATATCATTTTGAACCGACGTTAATTTAATTCATGCATGCATGTGCATGTGCATGGGTGTCTGAATAAGCTGGCATTTTGTGTGTTTTATAAGAGAAACTCAAACAAATAGGAGCAGCCGTACCATTAATGAAGCAATGGAGGCATATCCTAAGGTCTTGTAACGTCCAAAATAAGTGTCACAAAGAAATGCTCCAAACAAAGTGGAAAAGTTGGTGCTGCCATGGAAAATGTTCATAAGAGTTGTGGCAGTGATATTTTTCATGTGAAATACATCTGTCAAATACACCAAAAGGTTTGAAGAAGTGCCTGTAGTCCCTAGCTTCTCAAAAGTTTCATTCCCTAAATAAACAAACCCACATATTAATTAACATTACAAATATTAAAACAAAACAAAAATGGAAGCTTGATTTGTGTTTGACCTCCCTAGGGACTTCTCTTACGAACCTACTACAAATGGCATGGCCTTGACTCCTTTATAATTGACCTTAGGCTCATCAAGATTGTGAACATCTTCATCATTTCTCTCCATGGCTCTCTCTCAGAACCACTCTCTGATCTTATTAGTCTTTTCTACAACAAACCCTTTTATACTTTGATCCACTACCGAGTTTACTTATGCTTTCAATATTGCATTTGCTTATTTGGTTCAACAGGTTGTCAACTTTGGATGTGCTGTATCAGCATATGAAGTGTTAGATCGAGATAACTACTTTTTGTTAGCTTTCAAAGATTTGTGATGTGTTTTTTCCCTGAATAGTAATAAGGACAAAGATGTAATGAGAAAGTGAAATGTGTGCAGGATGATCAAAGTTGTTTAATTAATATAGCTCAAAATGATATCAGAAGGAGGGATGTGAAATCTCACACATTAATTCTCAAAAAGAATAATTCTCATCTCTTCTTTTGGGTGTAACTAACTTGTTACTTAGTTTAAGTTCATTAAAGCATGGATTTATGGAATTTAGTTTCCTCTAGATAACATTAGCTCTCTTGTTTTCCAAATACTAACATTATATTTGGTAATTGAAACTCATTTATGTGACTCCATAAACATAAACATACGCATATCTCAATCTGACCCATCTTTATTTTACAATAATGTTTACATTTACAAACTTCGGCATTGTGATGTCAGCGTACCAAGCGATGGGACAAAGCATGTTGATTGTCCTTATCGAAAATGCTGTTTTGCAGGGAAGCCAGTTAATGCCAAAGCCCTTCACTGTGAGGAAAGGTACAGCAGGCTGTGGAAATGCTATTCCTGGACTGAAAACACAGCAATCCATCGCTTCTCAAAGTTTCAAAAGTGCTGAATTAATGTGACAGCTTTGGTTAGTACAAAAATCACTGTTGTTTTTTTCTTCTTCTTTTTGAAAACAGTTGCATGTAGCATTTAATTAGCTCATTGAAACTGCTTATAGATTAATGATATGTACAGCAGAATTCGAATTTGAGAGACTTCATAAATGCCTGCCTGAGTTTTGTGAAGCACATAAAGTGCCATATTTCCAAGAGGTTGGTTGATGGCCCAAACAGAGAAATTGATAAATTGATCTAAAAAATTGTCTATTGTTGTATGGATTGGCCTTGTTCATATTCACACTTCAATGATTATCATTCATGAGGTATATTTTCTTTAGTAACTTTTCTCCCCCCTCAAGTCACCTGTGTCCCTGATTCTAGTCAAAAAAAAAAAAAAGAAAAAAAAGGTATACCAAGATGTAGCAGGCTTAGAGAGTGGGGTCTAGTATGGAATCTAGAGTTAGTTTCATATGTTAAAAGTCATAATGAAGGATTCTTTAGAGATTGAACTTTTATGAGGAGGATATAATAGAATGATGTGAAACATCACTTAAACCAGTCACATTATTTGGAGTATTCTTATTAATTGAGAGTTGTTTTTCCAAAGGTTGGAAAATAAAATTCAAATTGAAAGTGACAAAATATTCCTTTCAATTACCATGCAAAAGTAAAAGCATCTAAATCTAACTACATTTCTAGCTCTATCATTTGATTGGTATTATATTGGATGAGATATTTATTTAGCTTAGTCAATATGAACACGTGAACTGAAAATGGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCACATATATTGATACAATGGAGATCTTGTCTCCTTATTTATTATGACTATGAGTCTATCATCCAAGTGGTATATTAGATTCAAATCTCAAACTTATGGAATGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAACTATATAAAAATTGAGTTGTTTTCGAATATAAAAAAATGAACCAAAATATTTACAACTATAGTAAGATTTCAGTGTCTATCTACAATAGACCGTAATAGGCTACTATCTGTGTCTATCTGTATCGTGATAGACACAAATAGTAGTCTATTGCGATCTATTGCAATCTATTGTAAATAGATTGCTATATTTTGTTATTATTTGTAAATATTTTTAATAGTTTTGTCATTTAAAATAATTTTTCTTAAAAATTATGGGTGAGTTTTTGGTCCCATTTGGAATTAAGTTTGTGGGAATAAAAACTAAATAGAGTATGGGAGAACCTTAACCGTTTAGGCCGTTTGGTAAATCAGATTATTTAACTTTCCTATAAAACTTGTACCTTCTCTAACTAGTTTTATACAAATATATTATTCTCACATCTATTCACTTTTCAATTTTTAATAATAATTTTGTTGTTTAACTTTTATCAAATAATTTAGATGGAAATACACTTTTTAATTTAAGGCATATAAAATTTTTAAATAATTATTTTACCGTAAGTTTGATATAAAATATTAATATATAATTGAAATAATATGTCTGATTTACTTATTATAGTGTTAAACCATAACAATTTCGTATTAAGTTTATTAAACCCCTCTCTATGTATTTTCATGTATAAAATTAAAATTTACTTAACACTATTTTTACTTCATGTCATAGTTGACTTTTTTTCTCAAAGCATTGTTACATGCAGTTATTTTGAAAACTAAACAATTGCATTTTAAAACATGGATCATATATGAGTCTTCATTCGCTAAATACACTTTTGGTCATGTAGGTGTCAATTTAGTCACGGAGGGACCAAATATACATCTACTTTATTTTGGCCTATATATATATATATATTATTTGTTGAAGCCCGTGAAGGCTAATTCAATGATTGATTTGATGATTAGAAATCATATTGAAGGCAGTTTTGGTTGTTATTGCCGAAAGGTCTTCAAATAGAGACGTGTTTGAAACTCAAAGTTGTGAGATTGAATCAAAACACAAAGACAAAGTGGTCAAACAAGTTGAAGTTTGAGCAGTGAGATAGTTGAATTATCCAATGCTTCAAAACCATCTCAAATAATTAACCTTTTGTTTTGCTCAGTGAAGACAAGAATAAATGA

mRNA sequence

ATGACGAGTGTCCATGGATCGGCTGCTGATCCGTCTGACTTGAATTTGTCTTCTGGGGGTCTGATTCCACCAGCTCCGATTACAAGCAGTCCTAACCCAAATAACAGAAATGCAATCTGCCATGGCGTTGCCTCTAGGCAAGGCCCGCCTGCACTGCCCTTTCCACAATCTGGTGGGTGCAACTTCGCAATTGACGCTGTCAGTGGAAGCCAGTTAATGCCAAAGCCCTTCACTGTGAGGAAAGGTACAGCAGGCTGTGGAAATGCTATTCCTGGACTGAAAACACAGCAATCCATCGCTTCTCAAAGTTTCAAAAGTGCTGAATTAATTGAAGACAAGAATAAATGA

Coding sequence (CDS)

ATGACGAGTGTCCATGGATCGGCTGCTGATCCGTCTGACTTGAATTTGTCTTCTGGGGGTCTGATTCCACCAGCTCCGATTACAAGCAGTCCTAACCCAAATAACAGAAATGCAATCTGCCATGGCGTTGCCTCTAGGCAAGGCCCGCCTGCACTGCCCTTTCCACAATCTGGTGGGTGCAACTTCGCAATTGACGCTGTCAGTGGAAGCCAGTTAATGCCAAAGCCCTTCACTGTGAGGAAAGGTACAGCAGGCTGTGGAAATGCTATTCCTGGACTGAAAACACAGCAATCCATCGCTTCTCAAAGTTTCAAAAGTGCTGAATTAATTGAAGACAAGAATAAATGA

Protein sequence

MTSVHGSAADPSDLNLSSGGLIPPAPITSSPNPNNRNAICHGVASRQGPPALPFPQSGGCNFAIDAVSGSQLMPKPFTVRKGTAGCGNAIPGLKTQQSIASQSFKSAELIEDKNK

Homology

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BLAST of CcUC06G126320 vs. ExPASy TrEMBL
Match: A0A2P2IZ49 (Proton-dependent oligopeptide transport family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.7e-04
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 22 IPPAPITSSPNPNNRNAICHGVASRQGPPALPFPQSGGCNFAIDAVSGSQLMP 75
          +PPAPIT +P+P +RNAICHGV S Q   A   PQ  GC+  I AVS S  +P
Sbjct: 1  MPPAPITRNPSPPSRNAICHGVGSGQ-LLASAAPQCEGCSLEIAAVSVSSSIP 52

The following BLAST results are available for this feature:

BLAST of CcUC06G126320 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC06G126320 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC06G126320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2IZ49	8.7e-04	54.72	Proton-dependent oligopeptide transport family protein OS=Rhizophora mucronata O...	[more]

BLAST of CcUC06G126320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G126320.1	CcUC06G126320.1	mRNA