CcUC06G125750 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G125750
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr06: 28129219 .. 28132156 (+)
RNA-Seq ExpressionCcUC06G125750
SyntenyCcUC06G125750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTAGGATGAAGAGGGTCGAATATCCATCCTGAATTAGCTTTCCATTTCTATTACTCCTCTAAGATTTCTAACAGAAACGAAACGAAACGAAGAATGTAAGAAATCTGAATGAAAATCGATTATACAAAATGACAGCGCAAATGTTAACAGAAACAGAACCAAAACCAGAATTCACAGTATAATTCTAAGGCATCCCATCATAAAAGGGAATCTAAGAAATCAAGAATTCAATAAGAAGACGGCACTGTAATGTGATTTGAATGTTGAATTAGACAAAATTCAAGTATGGAATGATAATGTATGTTCTTAAAGCAGTCTATCATTTCTTTAATTGAATAATTGAATTGGGGAATGGCAAGAAAATCAACCTTCGTCGGCTTCTCCACCTTCTTCTTCTTCATCTTCGATTCCTTCTTCGTAATTAATTCCATATCTCTCATTCAGATATTCTACCGCCGCCGGCGTCAACACCAACTTATCGGAATCCAAAATATCAAACAAATTCAGCGTCCTTGGCGTCAACAACTTCAACGTTCCAATATTACGGCTAGATAGTCGGACGTTATCAGAAACCTCCGTCATTAAGAACAATGATTTCTCCTTTGGATCGATTCCCCATCTCTTCAACGCAGCGATGAATTCTTTAGTTTTCGGCTTCTCGAACTTGTCCCCAAAATCCTCTACCACTATCGTGTTAACCGCCGCACTAGCCACCGCCGTCGATATTGCCAGTCTCTTCTCCTTTCTGTTGATCTTAATTGACCAATCTCTAGGTTTCGGCCCGAAGACCACCCCTCCACCTGGCCGGAGAGGAGTACGCATCGAACCGCGACGAGCCTTCCCGGTTTTCTTCTGCTGGTAGGGTTTTCTGCCGCCTCCACTAACCTCAGCTCTGGTGAGAGTCGAGGCGGTCCCACGGCGCTTGTTCTGTTGATCGGTGATAATGGCTCGGTGAACGACAGCGCGGGCGGTTTCTGGTGGAGCAGATTTTAGGTCGAGGTAGGTTTCACCGACTTTTTCTCCAGTGAAGGAGAGGACTGGAAGTGTAGCGAGCTCGGAGGAGATTGATAAGGGTTTAGTTTGGGGTTTAAGGGAGTTAGGTTTCCAATTGCAGAAGAGCTTGGAATTTTGGAGGTTGGGGAAAGAAAGGAAGACGGATGAAGTGAAGAAAGAGAGCGACAATGGCGTGGTGGAGGCCGCCATTGTTGGTGGGATGGAGGAGCTTAGTTCTGCGGATAGCTTCGTTATCCACTCCCGCTGGAGATCAGTGGCAAAGAAGAAAATACCATCATTCGTCCGTTTTTACCAAAAATTTGAAATTAAAATAAATAAATAAATAAAACATTTTTCACTTTTAAGTAATTTAACTTGATCCATTTCCATTAAAATAATAATTTAAATCGTAAACTTAGAGGAAAATTACTTGCATTTTGGGTATTAAAAGTCAAAGATATTAATTTTGCTTTGGTTTCACTCTCTCTAGTATCGCTCTCACCGATATCACTCTTGCTAGTCTTGCTCTCGCTAATTTCGGTATCTCTGGTATCGCTCTCTCTAATTATACCCGTCTTCAACACTCTCTCTGAATATCTGATTATACCCGTCTTCAACCTCAACGCTAGTTAGATGATTTTGAAAAGCAAAGACACAAATAAAACCCTAGAGAGACTATCAATTACTAAACCCCCAATTGCGAAATTGATTTGACTTCATGTGGACCAACACTAAGCATTAAAAACATGCAAATGGATACGGACTGTAACGACCTGACCCTTTAAGAACTAACACATCGCTACTTCATGCGTGACCATTTAGTAAAAACGTTTGAACTAAGAGACACGGTTTGGCACACTTTAAATAAACTTGGTCAATTTATAAAACGACTGAACTTCTTGATAGGTTATTTAAATAAGGTGCATTAGCGGGGTACCCCTTAAATAGATAGGCAAAGTTTCAAGAAAGAAAATTTGAACACAACAGTAACAAGACAATTAATTAACAGTCTAATACATGCAAATACTACTACCCTACAACTCCAGTACGCTATACCCTAGGCTACGGTGCGGAAGCAGTGTGACGGCCTCATGGTACGATCACTGATTTCCTCAGGCATGCGCTTGGCCACCATGCTCCTTGCCTGAGAGAAAAACAATGCTTAGTAAGGGGCCCACTACTGGACCTAGCTATCACCTTATCTATCATGTGCACCCGTGTACCCGGTATAGGCGAGTTATATTTACATCATAAGCATAGGTGGTGATCCTGAGGGACACCTTTCATAGCATAGTACATTGGGGGTACATGGCACGACAAGTGAGGTAACCTATAACATGTCATGACATATCCAGTTCATTGTAGAGTTTCACAGAGTCACAAACACATAATCATACGTACATTGCATATACGCTTCAAACTTAGTATATTGAAACAGTCATAGAAATCAACATCGAGACAAAAGTTTCATAGCGGCATTCAATAGTTTAATAGCACAATTAGACATTTAGGCGTCACTTAAAGCCCGGTAGTAAGTCCCTTACTTGCGAGACTTAGCGAGACTGAGCGAGACAGCGAAACTGACCTTACCAGCGAGATTGAGCGACTCCCCTACACTGCGGCAGTGTGCTATGAAAACTGTGTCGACGCGTTGCGGAGAGGGTTGAGGCGACGCGGCGATGAAGACTATGATGATGCGGTGAAGTGCGGGCCGTGATGATGCGGCGATGGACTGATGACGCAGCGATGGACTAATGATGTGGCGATGAACTACTGATGAGGCGCTGGACTAATGATGCGGCGCTGGACTAATGATGCGACGACGGACTACTGATGCGGTAATGGACAATGATGCAGCGACGGAATACTAATGCGGCAATGTTGGCGACGAGTGCTGATGACGGTGGCGATGAGGGCTGGAGAGGACAGCGACAATGA

mRNA sequence

ATGGATATTCTACCGCCGCCGGCGTCAACACCAACTTATCGGAATCCAAAATATCAAACAAATTCAGCGTCCTTGGCGTCAACAACTTCAACGTTTCGGCCCGAAGACCACCCCTCCACCTGGCCGGAGAGGAGTACGCATCGAACCGCGACGAGCCTTCCCGGTTTTCTTCTGCTGGTAGGGTTTTCTGCCGCCTCCACTAACCTCAGCTCTGGTGAGAGTCGAGGCGGTCCCACGGCGCTTGTTCTGTTGATCGGTGATAATGGCTCGGTGAACGACAGCGCGGGCGGTTTCCAATTGCAGAAGAGCTTGGAATTTTGGAGGTTGGGGAAAGAAAGGAAGACGGATGAAGTGAAGAAAGAGAGCGACAATGGCGTGGTGGAGGCCGCCATTGTTGGTGGGATGGAGGAGCTTAGTTCTGCGGATAGCTTCGTTATCCACTCCCGCTGGAGATCAGTGGCAAAGAAGAAAATACCATCATTCCGACGGAATACTAATGCGGCAATGTTGGCGACGAGTGCTGATGACGGTGGCGATGAGGGCTGGAGAGGACAGCGACAATGA

Coding sequence (CDS)

ATGGATATTCTACCGCCGCCGGCGTCAACACCAACTTATCGGAATCCAAAATATCAAACAAATTCAGCGTCCTTGGCGTCAACAACTTCAACGTTTCGGCCCGAAGACCACCCCTCCACCTGGCCGGAGAGGAGTACGCATCGAACCGCGACGAGCCTTCCCGGTTTTCTTCTGCTGGTAGGGTTTTCTGCCGCCTCCACTAACCTCAGCTCTGGTGAGAGTCGAGGCGGTCCCACGGCGCTTGTTCTGTTGATCGGTGATAATGGCTCGGTGAACGACAGCGCGGGCGGTTTCCAATTGCAGAAGAGCTTGGAATTTTGGAGGTTGGGGAAAGAAAGGAAGACGGATGAAGTGAAGAAAGAGAGCGACAATGGCGTGGTGGAGGCCGCCATTGTTGGTGGGATGGAGGAGCTTAGTTCTGCGGATAGCTTCGTTATCCACTCCCGCTGGAGATCAGTGGCAAAGAAGAAAATACCATCATTCCGACGGAATACTAATGCGGCAATGTTGGCGACGAGTGCTGATGACGGTGGCGATGAGGGCTGGAGAGGACAGCGACAATGA

Protein sequence

MDILPPPASTPTYRNPKYQTNSASLASTTSTFRPEDHPSTWPERSTHRTATSLPGFLLLVGFSAASTNLSSGESRGGPTALVLLIGDNGSVNDSAGGFQLQKSLEFWRLGKERKTDEVKKESDNGVVEAAIVGGMEELSSADSFVIHSRWRSVAKKKIPSFRRNTNAAMLATSADDGGDEGWRGQRQ
Homology
[Close]
BLAST of CcUC06G125750 vs. NCBI nr
Match: KAF7845037.1 (50S ribosomal protein L4, chloroplastic [Senna tora])

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-04
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 0 

Query: 32  FRPEDHPSTWPERSTHRTATSLPGFLLLVGFSAASTNLSSGESRGGPTALVLLIGDNGSV 91
           FRPE   S  PER   R  T   G LL VGF  ++T+L + E   G +ALVL +GD+G+V
Sbjct: 134 FRPEHDASPGPERRPGRPLTGTAGLLLRVGFPPSATDLGACERGRGSSALVLEVGDDGAV 193

Query: 92  NDSAGGF 99
           +D A GF
Sbjct: 194 HDGACGF 200

The following BLAST results are available for this feature:
BLAST of CcUC06G125750 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7845037.12.0e-0447.7650S ribosomal protein L4, chloroplastic [Senna tora][more]
BLAST of CcUC06G125750 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC06G125750 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC06G125750 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G125750.1CcUC06G125750.1mRNA