CcUC06G125740 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G125740
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ubiquitinyl hydrolase 1
Location	CicolChr06: 28127456 .. 28128051 (+)
RNA-Seq Expression	CcUC06G125740
Synteny	CcUC06G125740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTATCCGCGGCGAAGGCACTCCGTCGGTGACATACAATTCCGAGATCGCTTCTATCTCCGAAGATTTATCATTTGCCATGTAATTAAGATGCTGTTTAACCGATTTATACTGTTTCTCATCATTAAGAAGGAACGATGTCCATAGGATCTCAGAATTAGAACTTATCGTCTCACTGTTTCCCGATTTGTTGCATTCTTTATGTGTTTCGATGTCTTCTTACCACTATATCTTCTATTAGCATCATAAATATCTTTTATTTATAACAGGAAAAGGATGCATTTACTCGAGCAAACTTAAATGCAATTGCTGAAAAGCTGGTGCTCGACGAGCCAAACAAAGAACCTTGGACGCCATTATCATTTGTCTTTAAGCCTCATCACAACACAGTAACTGGAAATTATAACATAAATGTCCTAATTTCATCTCTGGTTGAGAAAGGAAAGAGTGTGGTGTGGCATGACCATCGGAATGGAGCTTCTTCAATCGATTTGGATGGACCTGTGGATACCCATAAACTTATGGAATTGCACTTAACGTCTCAGTTAGAAGGTTTGGTGGCATTTGGAAAAGTACGCACTGGGTTGCTTTGA

mRNA sequence

ATGCCCTATCCGCGGCGAAGGCACTCCGTCGGTGACATACAATTCCGAGATCGCTTCTATCTCCGAAGATTTATCATTTGCCATGAAAAGGATGCATTTACTCGAGCAAACTTAAATGCAATTGCTGAAAAGCTGGTGCTCGACGAGCCAAACAAAGAACCTTGGACGCCATTATCATTTGTCTTTAAGCCTCATCACAACACAGTAACTGGAAATTATAACATAAATGTCCTAATTTCATCTCTGGTTGAGAAAGGAAAGAGTGTGGTGTGGCATGACCATCGGAATGGAGCTTCTTCAATCGATTTGGATGGACCTGTGGATACCCATAAACTTATGGAATTGCACTTAACGTCTCAGTTAGAAGGTTTGGTGGCATTTGGAAAAGTACGCACTGGGTTGCTTTGA

Coding sequence (CDS)

ATGCCCTATCCGCGGCGAAGGCACTCCGTCGGTGACATACAATTCCGAGATCGCTTCTATCTCCGAAGATTTATCATTTGCCATGAAAAGGATGCATTTACTCGAGCAAACTTAAATGCAATTGCTGAAAAGCTGGTGCTCGACGAGCCAAACAAAGAACCTTGGACGCCATTATCATTTGTCTTTAAGCCTCATCACAACACAGTAACTGGAAATTATAACATAAATGTCCTAATTTCATCTCTGGTTGAGAAAGGAAAGAGTGTGGTGTGGCATGACCATCGGAATGGAGCTTCTTCAATCGATTTGGATGGACCTGTGGATACCCATAAACTTATGGAATTGCACTTAACGTCTCAGTTAGAAGGTTTGGTGGCATTTGGAAAAGTACGCACTGGGTTGCTTTGA

Protein sequence

MPYPRRRHSVGDIQFRDRFYLRRFIICHEKDAFTRANLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNTVTGNYNINVLISSLVEKGKSVVWHDHRNGASSIDLDGPVDTHKLMELHLTSQLEGLVAFGKVRTGLL

Homology

[Close]

BLAST of CcUC06G125740 vs. NCBI nr
Match: XP_038902688.1 (josephin-like protein [Benincasa hispida] >XP_038902689.1 josephin-like protein [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 1.0e-37
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 29  EKDAFTRANLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNTVTGNYNINVLISSLVEKGKS 88
           EKDAFTRANLNAIAEKLVLDEPN+E WTPLSFVFKPHHNTVTGNY+INVLIS+L EKGK 
Sbjct: 29  EKDAFTRANLNAIAEKLVLDEPNEERWTPLSFVFKPHHNTVTGNYDINVLISALEEKGKI 88

Query: 89  VVWHDHRNGASSIDLDGPVDTHKLMELHL 118
           VVWHDHRNGASSIDLDGP DTHKLM + L
Sbjct: 89  VVWHDHRNGASSIDLDGPEDTHKLMGIVL 117

[Close]

BLAST of CcUC06G125740 vs. NCBI nr
Match: XP_022148354.1 (josephin-like protein [Momordica charantia] >XP_022148355.1 josephin-like protein [Momordica charantia] >XP_022148357.1 josephin-like protein [Momordica charantia] >XP_022148358.1 josephin-like protein [Momordica charantia])

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-37
Identity = 78/89 (87.64%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 29  EKDAFTRANLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNTVTGNYNINVLISSLVEKGKS 88
           E DAFTRANLNAIAE LVL+EPNKEPWTPLSFVFKPHHNTVTGNY+INVLIS+L EKGKS
Sbjct: 29  ENDAFTRANLNAIAENLVLNEPNKEPWTPLSFVFKPHHNTVTGNYDINVLISALEEKGKS 88

Query: 89  VVWHDHRNGASSIDLDGPVDTHKLMELHL 118
           VVWHD RNGASSIDLDGP DTHKLM + L
Sbjct: 89  VVWHDRRNGASSIDLDGPEDTHKLMGIVL 117

[Close]

BLAST of CcUC06G125740 vs. NCBI nr
Match: XP_022986948.1 (josephin-like protein [Cucurbita maxima])

HSP 1 Score: 164.1 bits (414), Expect = 8.5e-37
Identity = 77/89 (86.52%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 29  EKDAFTRANLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNTVTGNYNINVLISSLVEKGKS 88
           E +AFTRA+LNAIAEKLVLDEPNKEPWTPLSFVFKPHHN+VTGNY+INVLIS+L EKGKS
Sbjct: 29  ENNAFTRAHLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNSVTGNYDINVLISALEEKGKS 88

Query: 89  VVWHDHRNGASSIDLDGPVDTHKLMELHL 118
           VVWHDHRNGASSIDLDGP  THKLM + L
Sbjct: 89  VVWHDHRNGASSIDLDGPEATHKLMGIVL 117

[Close]

BLAST of CcUC06G125740 vs. NCBI nr
Match: KAG7010513.1 (Josephin-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-36
Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 29  EKDAFTRANLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNTVTGNYNINVLISSLVEKGKS 88
           E DAFTRA+LNAI+EKLVLDEPN+EPWTPLSFVFKPHHN+VTGNY+INVLIS+L EKGKS
Sbjct: 29  ENDAFTRAHLNAISEKLVLDEPNREPWTPLSFVFKPHHNSVTGNYDINVLISALEEKGKS 88

Query: 89  VVWHDHRNGASSIDLDGPVDTHKLMELHL 118
           VVWHDHRNGASSIDLDGP  THKLM + L
Sbjct: 89  VVWHDHRNGASSIDLDGPEATHKLMGIVL 117

[Close]

BLAST of CcUC06G125740 vs. NCBI nr
Match: KAG6570667.1 (Josephin-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-36
Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 29  EKDAFTRANLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNTVTGNYNINVLISSLVEKGKS 88
           E DAFTRA+LNAI+EKLVLDEPN+EPWTPLSFVFKPHHN+VTGNY+INVLIS+L EKGKS
Sbjct: 29  ENDAFTRAHLNAISEKLVLDEPNREPWTPLSFVFKPHHNSVTGNYDINVLISALEEKGKS 88

Query: 89  VVWHDHRNGASSIDLDGPVDTHKLMELHL 118
           VVWHDHRNGASSIDLDGP  THKLM + L
Sbjct: 89  VVWHDHRNGASSIDLDGPEATHKLMGIVL 117

[Close]

BLAST of CcUC06G125740 vs. ExPASy Swiss-Prot
Match: O82391 (Josephin-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g29640 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.8e-28
Identity = 55/76 (72.37%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 29  EKDAFTRANLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNTVTGNYNINVLISSLVEKGKS 88
           +KDAFT+ +LN+IAEKL  ++PNKE WTPLSFV KPHHNT+TGNY++NV+I++L  KGKS
Sbjct: 29  DKDAFTKESLNSIAEKLETNDPNKETWTPLSFVLKPHHNTITGNYDVNVMITALEGKGKS 88

Query: 89  VVWHDHRNGASSIDLD 105
           VVWHD R GASSIDLD
Sbjct: 89  VVWHDKRIGASSIDLD 104

[Close]

BLAST of CcUC06G125740 vs. ExPASy TrEMBL
Match: A0A6J1D2P2 (Ubiquitinyl hydrolase 1 OS=Momordica charantia OX=3673 GN=LOC111017028 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-37
Identity = 78/89 (87.64%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 29  EKDAFTRANLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNTVTGNYNINVLISSLVEKGKS 88
           E DAFTRANLNAIAE LVL+EPNKEPWTPLSFVFKPHHNTVTGNY+INVLIS+L EKGKS
Sbjct: 29  ENDAFTRANLNAIAENLVLNEPNKEPWTPLSFVFKPHHNTVTGNYDINVLISALEEKGKS 88

Query: 89  VVWHDHRNGASSIDLDGPVDTHKLMELHL 118
           VVWHD RNGASSIDLDGP DTHKLM + L
Sbjct: 89  VVWHDRRNGASSIDLDGPEDTHKLMGIVL 117

[Close]

BLAST of CcUC06G125740 vs. ExPASy TrEMBL
Match: A0A6J1JI12 (Ubiquitinyl hydrolase 1 OS=Cucurbita maxima OX=3661 GN=LOC111484533 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.1e-37
Identity = 77/89 (86.52%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 29  EKDAFTRANLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNTVTGNYNINVLISSLVEKGKS 88
           E +AFTRA+LNAIAEKLVLDEPNKEPWTPLSFVFKPHHN+VTGNY+INVLIS+L EKGKS
Sbjct: 29  ENNAFTRAHLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNSVTGNYDINVLISALEEKGKS 88

Query: 89  VVWHDHRNGASSIDLDGPVDTHKLMELHL 118
           VVWHDHRNGASSIDLDGP  THKLM + L
Sbjct: 89  VVWHDHRNGASSIDLDGPEATHKLMGIVL 117

[Close]

BLAST of CcUC06G125740 vs. ExPASy TrEMBL
Match: A0A6J1FYW5 (Ubiquitinyl hydrolase 1 OS=Cucurbita moschata OX=3662 GN=LOC111449101 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.2e-37
Identity = 75/89 (84.27%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 29  EKDAFTRANLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNTVTGNYNINVLISSLVEKGKS 88
           E DAFTRA+LNAI+EKLVLDEPN+EPWTPLSFVFKPHHN+VTGNY+INVLIS++ EKGKS
Sbjct: 29  ENDAFTRAHLNAISEKLVLDEPNREPWTPLSFVFKPHHNSVTGNYDINVLISAMEEKGKS 88

Query: 89  VVWHDHRNGASSIDLDGPVDTHKLMELHL 118
           VVWHDHRNGASSIDLDGP  THKLM + L
Sbjct: 89  VVWHDHRNGASSIDLDGPEATHKLMGIVL 117

[Close]

BLAST of CcUC06G125740 vs. ExPASy TrEMBL
Match: A0A1S4E4I3 (Ubiquitinyl hydrolase 1 OS=Cucumis melo OX=3656 GN=LOC103502098 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.5e-36
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 29  EKDAFTRANLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNTVTGNYNINVLISSLVEKGKS 88
           EKDAFTRANLNAIAEKLV DEPN+E WTPLS VFKPHHNTVTGNY+INVLIS+L EKGKS
Sbjct: 30  EKDAFTRANLNAIAEKLVRDEPNQETWTPLSIVFKPHHNTVTGNYDINVLISALEEKGKS 89

Query: 89  VVWHDHRNGASSIDLDGPVDTHKLMELHL 118
           VVWHDHRNGAS+IDLDGP DT KLM + L
Sbjct: 90  VVWHDHRNGASTIDLDGPDDTRKLMGIVL 118

[Close]

BLAST of CcUC06G125740 vs. ExPASy TrEMBL
Match: A0A5D3CVY1 (Ubiquitinyl hydrolase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00510 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.5e-36
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 29  EKDAFTRANLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNTVTGNYNINVLISSLVEKGKS 88
           EKDAFTRANLNAIAEKLV DEPN+E WTPLS VFKPHHNTVTGNY+INVLIS+L EKGKS
Sbjct: 30  EKDAFTRANLNAIAEKLVRDEPNQETWTPLSIVFKPHHNTVTGNYDINVLISALEEKGKS 89

Query: 89  VVWHDHRNGASSIDLDGPVDTHKLMELHL 118
           VVWHDHRNGAS+IDLDGP DT KLM + L
Sbjct: 90  VVWHDHRNGASTIDLDGPDDTRKLMGIVL 118

[Close]

BLAST of CcUC06G125740 vs. TAIR 10
Match: AT2G29640.1 (JOSEPHIN-like protein )

HSP 1 Score: 124.4 bits (311), Expect = 6.9e-29
Identity = 55/76 (72.37%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 29  EKDAFTRANLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNTVTGNYNINVLISSLVEKGKS 88
           +KDAFT+ +LN+IAEKL  ++PNKE WTPLSFV KPHHNT+TGNY++NV+I++L  KGKS
Sbjct: 29  DKDAFTKESLNSIAEKLETNDPNKETWTPLSFVLKPHHNTITGNYDVNVMITALEGKGKS 88

Query: 89  VVWHDHRNGASSIDLD 105
           VVWHD R GASSIDLD
Sbjct: 89  VVWHDKRIGASSIDLD 104

The following BLAST results are available for this feature:

BLAST of CcUC06G125740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902688.1	1.0e-37	88.76	josephin-like protein [Benincasa hispida] >XP_038902689.1 josephin-like protein ...	[more]
XP_022148354.1	2.9e-37	87.64	josephin-like protein [Momordica charantia] >XP_022148355.1 josephin-like protei...	[more]
XP_022986948.1	8.5e-37	86.52	josephin-like protein [Cucurbita maxima]	[more]
KAG7010513.1	1.1e-36	85.39	Josephin-like protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6570667.1	1.1e-36	85.39	Josephin-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CcUC06G125740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82391	9.8e-28	72.37	Josephin-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g29640 PE=2 SV=1	[more]

BLAST of CcUC06G125740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D2P2	1.4e-37	87.64	Ubiquitinyl hydrolase 1 OS=Momordica charantia OX=3673 GN=LOC111017028 PE=4 SV=1	[more]
A0A6J1JI12	4.1e-37	86.52	Ubiquitinyl hydrolase 1 OS=Cucurbita maxima OX=3661 GN=LOC111484533 PE=4 SV=1	[more]
A0A6J1FYW5	9.2e-37	84.27	Ubiquitinyl hydrolase 1 OS=Cucurbita moschata OX=3662 GN=LOC111449101 PE=4 SV=1	[more]
A0A1S4E4I3	4.5e-36	85.39	Ubiquitinyl hydrolase 1 OS=Cucumis melo OX=3656 GN=LOC103502098 PE=4 SV=1	[more]
A0A5D3CVY1	4.5e-36	85.39	Ubiquitinyl hydrolase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CcUC06G125740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29640.1	6.9e-29	72.37	JOSEPHIN-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006155	Josephin domain	SMART	SM01246	Josephin_2	coord: 16..129 e-value: 0.0023 score: -12.8
IPR006155	Josephin domain	PFAM	PF02099	Josephin	coord: 30..103 e-value: 1.7E-6 score: 28.2
IPR006155	Josephin domain	PROSITE	PS50957	JOSEPHIN	coord: 3..135 score: 12.84384
None	No IPR available	PANTHER	PTHR13291:SF0	JOSEPHIN-LIKE PROTEIN	coord: 29..113
IPR040053	Josephin-1/2	PANTHER	PTHR13291	JOSEPHIN 1, 2	coord: 29..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G125740.1	CcUC06G125740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016579	protein deubiquitination
molecular_function	GO:0004843	thiol-dependent deubiquitinase