CcUC06G125540 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G125540
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionGlycine-rich RNA-binding protein 2
LocationCicolChr06: 27967023 .. 27969311 (+)
RNA-Seq ExpressionCcUC06G125540
SyntenyCcUC06G125540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTACTTAATTTGTCGAAAACCGAAGTGGAATGTGACTTCGAGTCTGCCTCTGATACCTTGGTTGATTATTCGTCATTTATTTCTTTCAGGCTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAAAGGATTGGATTAGATTTGCAGCCTTCCGGTTTGTCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTATCGGAGGTTCTCTGAGAATGCTTTGTTATTCTTGTTATTTTTTTCCTTTAAAGAACGTGTATACGCCAATTTCTTTGTCCTTATCATGTGCTTGTATGTACGATTGGCAGGTATTTCATACAGCACTGATGATCAAAGTCTCAGGGAAGCCTTTTCTAAATATGGGGAAGTAATCGAAGGTATATCATCCATCTCATTTACAATGAGTGTTGGAGGTTATCTTTGAAGTATATTTGTTTCAATTTTTATCTTATCTATTCTATATGTAACATAAATGAAATATGGAATAAACGAGCTTTTGGAACCCATATGGTCAAATCTGCTCGAGCAATTATGTCTCTTTTAAATATTTTCTGAAATAAGGCCCGGCAGGTGGCTTGAGGTAGCGGTGTCGCTTGATTCTGCTTGTTGTGCTAGTGGATTGTGAAGTTTTCGTTATAAATGTTGGTTTCCTTGTTTACCCTTCTTTTCTTTGCCACGGCGATAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGTAATGATTCTGCTATTGGCTCATTGAGATTAAAAAGGACAAAACGTTGTGTTATATTCATACGCTGCAATATACTGTAGAATTAATGCATCATCGCTCATAAAATGCTTCATGTCCGTTGTCTGCGTTCTTTTTTGTTAGATGATCCTGCTACTGTGTTACTTGTATGAAGAAGACTATCTAGTGAATGTATTTATGTTAATTGATCTTATGCAAACGTCTTCATGTAATACCTTAAATCATCATATTTCCTGTAGCAAACATTAGTATGATGCAGTGATATTGAGATATAGTAGCCCATTCTCTGTACGCTCAACAGTTAATATGTGTACTGATGTAAAGTGTTTTAGGGGTTGTCATGTGTGATAAAGGTGAGTTGTATGTTGGAGGTTTGTCCCAAATTGCGTTCATGTTATAGCACAGCCGTTCTGCTTATATTCTCAACTAGCTTGTATGTCATGGTACCAAATTGCCATTTAGATTTTTGTAGGAAAATAATCATTTAAAGCGATATGAGTGATTAAGATGTGTGGAATTTGGAGGCTTGTTCCACTTTCGAATACATGAGAACAAAACATATTTAAACTGACTTATTGTCGAGATTCATTCTTCTTAATTTAATTTGGTCCCCAATATTTGCTAAACAGAAAAAGCTCAATGGCTCAGGTTAATTATGTTTTTTTTTTCCTTCTTTAAACAGGACCTTCATGGTCGTCAGGTGAGAGTGAATTATGCTAATGATAGATCTCGTGGTTTCGGTGGTGGTGGCGGTGGCTATGGTGGCGGGGGCTATGGTGGTGGGGGCGGTGGTTATGGTGGTGGGGGCTATGGTGGCGGCGGGACTGGAGGTTATGGTGGCGGCGGGGCTGGAGGTTATGGTGGCGGCGGGAGTGGAGGAGGTTATGGTGATGGTAGTGGTGGATATGGTTCCGGAGGCAACTATTCAAGCAGTTTTGGCGGTGGTAGCCAAGGAAATTATAGTAACGATTTTGCCAGTGCCAACCGTGGAAGTGTTGCAGGTGATGGTGGCTTTGGTGGGAATGATGCTGGTGGTTACAACGCTGCTAGCAATTTTGCTACTGGAAACACATATGACAGTGGAACTAATGCTGGTTTTGGTAACGTCAGTGGCGGTGGCGGCGACTATTTTGCCAACAGTGGGTCCGATGCAAGGTCTGGGTTTGGAGGATACACTGGCGGGAAACAATTTGGCAGCAACGAAACAAACACCATGGATGCATCTGGAGATCAAGGCCAGGAGGAGCCACTGGAAGGAAATGATAGGGACGAAGACGACGCAGATGACTTTGCTAAAAGAGCCTGATAAATTATATGCATTATCCAGCATTTTTTTGTTATGGCCATGTAGTTTTTCCCTACATTCTATACTGAACTTCGTCTTTGTTTGTATGTTGGACTTGCTTCAATGGTTGTGAATTTTTCTATGCACTA

mRNA sequence

ATGGGCTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAAAGGATTGGATTAGATTTGCAGCCTTCCGGTTTGTCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTATCGGAGGTATTTCATACAGCACTGATGATCAAAGTCTCAGGGAAGCCTTTTCTAAATATGGGGAAGTAATCGAAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGACCTTCATGGTCGTCAGGTGAGAGTGAATTATGCTAATGATAGATCTCGTGGTTTCGGTGGTGGTGGCGGTGGCTATGGTGGCGGGGGCTATGGTGGTGGGGGCGGTGGTTATGGTGGTGGGGGCTATGGTGGCGGCGGGACTGGAGGTTATGGTGGCGGCGGGGCTGGAGGTTATGGTGGCGGCGGGAGTGGAGGAGGTTATGGTGATGGTAGTGGTGGATATGGTTCCGGAGGCAACTATTCAAGCAGTTTTGGCGGTGGTAGCCAAGGAAATTATAGTAACGATTTTGCCAGTGCCAACCGTGGAAGTGTTGCAGGTGATGGTGGCTTTGGTGGGAATGATGCTGGTGGTTACAACGCTGCTAGCAATTTTGCTACTGGAAACACATATGACAGTGGAACTAATGCTGGTTTTGGTAACGTCAGTGGCGGTGGCGGCGACTATTTTGCCAACAGTGGGTCCGATGCAAGGTCTGGGTTTGGAGGATACACTGGCGGGAAACAATTTGGCAGCAACGAAACAAACACCATGGATGCATCTGGAGATCAAGGCCAGGAGGAGCCACTGGAAGGAAATGATAGGGACGAAGACGACGCAGATGACTTTGCTAAAAGAGCCTGATAAATTATATGCATTATCCAGCATTTTTTTGTTATGGCCATGTAGTTTTTCCCTACATTCTATACTGAACTTCGTCTTTGTTTGTATGTTGGACTTGCTTCAATGGTTGTGAATTTTTCTATGCACTA

Coding sequence (CDS)

ATGGGCTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAAAGGATTGGATTAGATTTGCAGCCTTCCGGTTTGTCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTATCGGAGGTATTTCATACAGCACTGATGATCAAAGTCTCAGGGAAGCCTTTTCTAAATATGGGGAAGTAATCGAAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGACCTTCATGGTCGTCAGGTGAGAGTGAATTATGCTAATGATAGATCTCGTGGTTTCGGTGGTGGTGGCGGTGGCTATGGTGGCGGGGGCTATGGTGGTGGGGGCGGTGGTTATGGTGGTGGGGGCTATGGTGGCGGCGGGACTGGAGGTTATGGTGGCGGCGGGGCTGGAGGTTATGGTGGCGGCGGGAGTGGAGGAGGTTATGGTGATGGTAGTGGTGGATATGGTTCCGGAGGCAACTATTCAAGCAGTTTTGGCGGTGGTAGCCAAGGAAATTATAGTAACGATTTTGCCAGTGCCAACCGTGGAAGTGTTGCAGGTGATGGTGGCTTTGGTGGGAATGATGCTGGTGGTTACAACGCTGCTAGCAATTTTGCTACTGGAAACACATATGACAGTGGAACTAATGCTGGTTTTGGTAACGTCAGTGGCGGTGGCGGCGACTATTTTGCCAACAGTGGGTCCGATGCAAGGTCTGGGTTTGGAGGATACACTGGCGGGAAACAATTTGGCAGCAACGAAACAAACACCATGGATGCATCTGGAGATCAAGGCCAGGAGGAGCCACTGGAAGGAAATGATAGGGACGAAGACGACGCAGATGACTTTGCTAAAAGAGCCTGA

Protein sequence

MGCFKMAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLREAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYANDRSRGFGGGGGGYGGGGYGGGGGGYGGGGYGGGGTGGYGGGGAGGYGGGGSGGGYGDGSGGYGSGGNYSSSFGGGSQGNYSNDFASANRGSVAGDGGFGGNDAGGYNAASNFATGNTYDSGTNAGFGNVSGGGGDYFANSGSDARSGFGGYTGGKQFGSNETNTMDASGDQGQEEPLEGNDRDEDDADDFAKRA
Homology
BLAST of CcUC06G125540 vs. NCBI nr
Match: XP_038878732.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 409.5 bits (1051), Expect = 2.7e-110
Identity = 273/331 (82.48%), Postives = 284/331 (85.80%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAFL K GNILRQGANKRIGLDLQ S LSICQAVRWMSSMQSSKLF+GGISY+TDDQSLR
Sbjct: 1   MAFLGKFGNILRQGANKRIGLDLQASSLSICQAVRWMSSMQSSKLFVGGISYNTDDQSLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVT+TSSEEASSAIQALDGQDLHGR+VRVNYAN
Sbjct: 61  EAFAKYGEVLEARIIVDRETGRSRGFGFVTFTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 126 DRSRGFGGGGGGYGGGGYGGGGGGYGGGGYGG-----------GGTGGYGGGGAGGYGGG 185
           DR+RGF GGGGGYGGG YGGGGGGYGGGGYGG           GG GGY GGGAGGYGGG
Sbjct: 121 DRTRGF-GGGGGYGGGSYGGGGGGYGGGGYGGGGGDGYGGGGYGGGGGYSGGGAGGYGGG 180

Query: 186 GSGGGYGDGSG-----GYGSGGNYSSSFGGGSQGNYSNDFASANRGSV-AGDGGFGGNDA 245
           GSGGGYGDGSG     GY SGGNYS     GS GNYSND AS N GSV  G GGFGGNDA
Sbjct: 181 GSGGGYGDGSGGYSGTGYSSGGNYSR----GSGGNYSNDNASDNLGSVGTGGGGFGGNDA 240

Query: 246 GGYNAASNFATGNTYDSGTNAGFGNVSGGGGDYFANSGSDARSGFGGYTGGKQFGSNETN 305
            GYNAASNFA+GNT+DSGTNAGFGNVSGGG DYFANSG DA SG GGYTGG+QFGS ETN
Sbjct: 241 -GYNAASNFASGNTHDSGTNAGFGNVSGGGSDYFANSGFDASSGVGGYTGGEQFGS-ETN 300

Query: 306 TMDASGDQGQEEPLEGNDRDEDDADDFAKRA 320
           TMDASGDQG  E LEGNDRDEDD DDFAKRA
Sbjct: 301 TMDASGDQGLGEQLEGNDRDEDDTDDFAKRA 324

BLAST of CcUC06G125540 vs. NCBI nr
Match: KAG6589603.1 (Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 367.9 bits (943), Expect = 9.1e-98
Identity = 261/331 (78.85%), Postives = 277/331 (83.69%), Query Frame = 0

Query: 2   GCFKMAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDD 61
           GCFKMAFLSKVGNILRQGANKR GL+LQ   LSI QAVRWMSSMQSSK+FIGGISYSTDD
Sbjct: 11  GCFKMAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDD 70

Query: 62  QSLREAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRV 121
           QSLREAF+KYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGR+VRV
Sbjct: 71  QSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRV 130

Query: 122 NYANDRSR-----GFGGGGGGYGGGGYGGGGGGYGGGGYGGGGTGGYGGGGAGGYGGGGS 181
           NYANDRSR     G+GGGGGGYGGGGYGGGGGGYGGGGYGGG  GGYGGGG+ G GGG  
Sbjct: 131 NYANDRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGYGGG--GGYGGGGSYGGGGGSY 190

Query: 182 GGG-YG---DGSGGYG--SGGNYSSSFGGGSQGNYSNDFASANRGSVAGDGGFGGNDAGG 241
           GGG YG    G GGYG  SGG + S F  G   NYS+ F S ++GS  G+ G GGNDAG 
Sbjct: 191 GGGAYGGGVSGGGGYGGESGGGFGSGFSAGD--NYSSSFGSGSQGS-GGNYGTGGNDAGS 250

Query: 242 YNAASNFATGNTYDSGTNAGFG-NVSGGGGDYFANSGSDARSGFGGYTGGKQFGSNETNT 301
            NAASNFA+GNT+ SGT+A F  NVS GGGDYFANSGSDA SGFGGYTGG Q GSNE NT
Sbjct: 251 -NAASNFASGNTFGSGTSADFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQLGSNEANT 310

Query: 302 MDASGDQGQEEPLEGNDRDEDD-ADDFAKRA 320
           ++ASGDQG  E LEGNDRDEDD ADDFAKRA
Sbjct: 311 LNASGDQGLGEQLEGNDRDEDDNADDFAKRA 335

BLAST of CcUC06G125540 vs. NCBI nr
Match: KAG6587583.1 (Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 360.9 bits (925), Expect = 1.1e-95
Identity = 257/326 (78.83%), Postives = 275/326 (84.36%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAFLSKVGNILRQGANKRIG DLQ   LSICQAVRWMSSMQSSKLF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGR+VRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 126 DRSRGFGG---GGGGYGGGGYGGGGGGYGGGGYGGGGTGGYGGGGAGGYGGGGSGGGYGD 185
           DRSRG GG   GGGGYGGGGYGGGG G GGGGYGGGG GGY GGGAGGYGGGGS GGYGD
Sbjct: 121 DRSRGVGGGGYGGGGYGGGGYGGGGYG-GGGGYGGGGAGGY-GGGAGGYGGGGS-GGYGD 180

Query: 186 GSG-----GYGSGGNYSSSFGGGSQ---GNYSNDFASANRGSVAGDGGFGGNDAGGYNAA 245
           GSG     GY SGGNYS++FGGGSQ   GNY N+FAS +RGSV+  GGFGGNDA GYN A
Sbjct: 181 GSGGFSTTGYSSGGNYSNNFGGGSQGSGGNYGNEFASDSRGSVSTGGGFGGNDA-GYN-A 240

Query: 246 SNFATGNTYDSGTNAGFGNVSGGGGDYFANSGSDARSGFGGYTGGKQFGSNETNTMDASG 305
           SNF       SG ++G  NVSGGGGDYF+N GS+  SGFGGYTGG QF S ET+TM+A G
Sbjct: 241 SNF-------SGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDTMNAPG 300

Query: 306 DQGQEEPLEGNDRDE-DDADDFAKRA 320
             G  E LEGNDRDE DDA+DFAKRA
Sbjct: 301 -SGLGEQLEGNDRDEDDDANDFAKRA 313

BLAST of CcUC06G125540 vs. NCBI nr
Match: XP_022971767.1 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022971776.1 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022971783.1 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 359.0 bits (920), Expect = 4.2e-95
Identity = 253/327 (77.37%), Postives = 274/327 (83.79%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAFLSKVGNILRQGANK+IG DLQ S LSICQAVRWMSSMQSSKLF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGR+VRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 126 DRSRGFG----GGGGGYGGGGYGGGGGGYGGGGYGGGGTGGYGGGGAGGYGGGGSGGGYG 185
           DRSRG G    GGGGGYGGGG  GGGGGYGGGGYGG   GGYGGGG GGYGGGGS GGYG
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGGYGGGGGYGGGGYGG---GGYGGGGPGGYGGGGS-GGYG 180

Query: 186 DGSG-----GYGSGGNYSSSFGGGSQ---GNYSNDFASANRGSVAGDGGFGGNDAGGYNA 245
           DGSG     GY SGGNY+++FGGGSQ   GNY N+FAS +RGSV+  GGFGGNDA GYN 
Sbjct: 181 DGSGGFSTTGYSSGGNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFGGNDA-GYN- 240

Query: 246 ASNFATGNTYDSGTNAGFGNVSGGGGDYFANSGSDARSGFGGYTGGKQFGSNETNTMDAS 305
           ASNF       SG ++G  NVSGGGGDYF+N GS+  SGFGGYTGG QF S ET++M+A 
Sbjct: 241 ASNF-------SGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDSMNAP 300

Query: 306 GDQGQEEPLEGNDRDE-DDADDFAKRA 320
           G  G  E LEGNDRDE DDA+DFAKRA
Sbjct: 301 G-SGLGEQLEGNDRDEDDDANDFAKRA 313

BLAST of CcUC06G125540 vs. NCBI nr
Match: XP_023530847.1 (glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530848.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530849.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 359.0 bits (920), Expect = 4.2e-95
Identity = 255/325 (78.46%), Postives = 274/325 (84.31%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAFLSKVGNILRQGANKRIG DLQ S LSICQAVRWMSSMQSSKLF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGR+VRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 126 DRSRGFGGGGGGYGGGGYGGGG-GGYGGGGYGGGGTGGYGGGGAGGYGGGGSGGGYGDGS 185
           DRSRG GGGG G GGGGYGGGG GG G GGYGGGG GGYGGGGAGGYGGGGS GGYGDGS
Sbjct: 121 DRSRGVGGGGYG-GGGGYGGGGYGGGGAGGYGGGGAGGYGGGGAGGYGGGGS-GGYGDGS 180

Query: 186 G-----GYGSGGNYSSSFGGGSQ---GNYSNDFASANRGSVAGDGGFGGNDAGGYNAASN 245
           G     GY SGGNY+++FGGGSQ   GNY N+FAS +RGSV   GGFGGNDA GYN ASN
Sbjct: 181 GGFSTTGYSSGGNYTNNFGGGSQGSGGNYGNEFASDSRGSVGTGGGFGGNDA-GYN-ASN 240

Query: 246 FATGNTYDSGTNAGFGNVSGGGGDYFANSGSDARSGFGGYTGGKQFGSNETNTMDASGDQ 305
           F       SG ++G  NVSGGGGDYF+N GS+  SGFGG+TGG QF S ET+TM+A G  
Sbjct: 241 F-------SGGDSGNYNVSGGGGDYFSNRGSEESSGFGGFTGGDQFSSKETDTMNAPG-S 300

Query: 306 GQEEPLEGNDRDE--DDADDFAKRA 320
           G  E LEGNDRDE  DDA+DFAKRA
Sbjct: 301 GLGEQLEGNDRDEDDDDANDFAKRA 313

BLAST of CcUC06G125540 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 9.0e-48
Identity = 178/335 (53.13%), Postives = 218/335 (65.07%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAFLSK GNIL+Q  NK++   +  S  S+ QA+R MS   SSKLFIGG++YS D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           EAF+KYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 126 DRSR-------GFGGGGGGYGG-GGYGGGGGGYGG--------GGYGGGGTGGYGGGGAG 185
           DR+        G+GGGGGGYGG GGYGGG GGYGG        GGYGG   GGYGG  AG
Sbjct: 121 DRTSGGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGNAAG 180

Query: 186 GYGGGGSGGGYGDGSGGYGSGGNYSSSFGGGSQGNYSNDFASANRGSVAGDGGFGGNDAG 245
           GYGG G+GG  GD +G  G+GG Y SS G GS GN   + +SA+ G+V           G
Sbjct: 181 GYGGSGAGGYGGDATGHGGAGGGYGSSGGFGSSGNTYGEGSSASAGAV-----------G 240

Query: 246 GYNAASNFATGNTYDSGTNAGFGNVSGGGGDYFANSGSDARSGFGG----YTGGKQF-GS 305
            YN +S + + NTY S +N GF   S  GG    NS     S FGG    +T G QF G 
Sbjct: 241 DYNGSSGYGSANTYGS-SNGGFAGDSQFGGSPVGNS-----SQFGGDNTQFTAGGQFGGE 300

Query: 306 NETNTMDASGDQGQEEPLEGNDRDEDDADDFAKRA 320
           ++  +M+ S  + ++ P+ G      + +D AKRA
Sbjct: 301 DQFGSMEKSETKMEDGPIGG------EFEDVAKRA 309

BLAST of CcUC06G125540 vs. ExPASy Swiss-Prot
Match: Q9C909 (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.0e-30
Identity = 156/321 (48.60%), Postives = 192/321 (59.81%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAFLSKVG +  Q ++         +  S+ Q++R MS   SSK+F+GGISYSTD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSH------VTASSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           EAFSKYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLHGR++RVNYA 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 126 DRSRGFGGGGGGYGGGGYGGGGGGYG--GGGYGGGGTGGYGG-----GGAGGYGGGGSGG 185
           +R  GFGG G G  GGGYG   GGYG   GGY GGG GGYGG     G AGG GG G   
Sbjct: 121 ERGSGFGGRGFGGPGGGYGASDGGYGAPAGGY-GGGAGGYGGNSSYSGNAGGGGGYGGNS 180

Query: 186 GYGDGSGGYGSGGNYSSSFGGGSQGNYSNDFASANRGSVAGDGGFGGNDAGGYNAASNFA 245
            YG  +GGYG    YS +  GG  G Y ++F         G GG+G   AGG   + NFA
Sbjct: 181 SYGGNAGGYGGNPPYSGNAVGGG-GGYGSNF--------GGGGGYG--VAGGVGGSENFA 240

Query: 246 TGNTYDSGTNAGFGNVSGGGGDYFANSGSDARSGFGGYTGGKQFGSNETNTMDASGDQGQ 305
            G    S TNAGF +          ++     SG G   G +QFG ++    DA     +
Sbjct: 241 QG----SSTNAGFDDKFESNQPLGNDTDHQTESGLG---GDEQFGGSDNQFGDAENGNTE 289

Query: 306 EEPLEGNDRDEDDADDFAKRA 320
             P+     D+ D  D AKRA
Sbjct: 301 NGPV---GFDQTDDGDVAKRA 289

BLAST of CcUC06G125540 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.7e-25
Identity = 95/177 (53.67%), Postives = 123/177 (69.49%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAF +K+G +LRQ  +    + +     S+  ++R M    S+KLFIGG+S+ TDD SLR
Sbjct: 1   MAFCNKLGGLLRQNISSNGNVPV----TSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           +AF+ +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+GR +RVN AN
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 126 DR---SRGFGGGGGGYGGGGYGGGGGGYGGGGYGGGGTGGYGGGGAGGYGGGGSGGG 180
           DR    R +G      GGGGY GGGGGYGGGG      GGYGGGG GGYGGGG GGG
Sbjct: 121 DRPSAPRAYG------GGGGYSGGGGGYGGGG------GGYGGGG-GGYGGGGDGGG 156

BLAST of CcUC06G125540 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-21
Identity = 95/156 (60.90%), Postives = 113/156 (72.44%), Query Frame = 0

Query: 49  KLFIGGISYSTDDQSLREAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 108
           + F+GG+ ++TDDQSL+ AFSKYG+VI++++I DRETGRSRGFGFVT+ S E    AI+A
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 109 LDGQDLHGRQVRVNYA----NDRSRGFGGGGGGY-------GGGGYGGGGGGYGGGGYGG 168
           ++GQDL GR + VN A    +D   GFGGGGGGY       GGGGYGGGGGGYGGG  GG
Sbjct: 67  MNGQDLDGRNITVNEAQSRRSDGGGGFGGGGGGYGGQRREGGGGGYGGGGGGYGGGRSGG 126

Query: 169 GGTGGYGGGGAGGYGGGGSGGGYGDGSGGYGSGGNY 194
           GG  G   GG GGYGGG  GGGYG   GG G GGN+
Sbjct: 127 GGGYGSRDGGGGGYGGG--GGGYGGSRGGSG-GGNW 159

BLAST of CcUC06G125540 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.4e-18
Identity = 95/167 (56.89%), Postives = 117/167 (70.06%), Query Frame = 0

Query: 49  KLFIGGISYSTDDQSLREAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 108
           + F+GG++++TD++SL  AFS++GE++++++I DRETGRSRGFGFVT+   +    AI+ 
Sbjct: 9   RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68

Query: 109 LDGQDLHGRQVRVNYANDRSRGFG----GGGGGY-GGGGYGGGGGGYG-----GGGYGGG 168
           ++GQDL GR + VN A  R  G G    GGGGGY GGGGYGGGGGGYG     GGGY GG
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGGGYGGGRREGGGYSGG 128

Query: 169 GTGGYG--GGGAGGYGGGG--SGGGYGDG-SGGYGSGGNYSSSFGGG 201
           G GGY   GGG GGYGGGG   GGGYG G  GGYG GG      GGG
Sbjct: 129 G-GGYSSRGGGGGGYGGGGRRDGGGYGGGEGGGYGGGG------GGG 168

BLAST of CcUC06G125540 vs. ExPASy TrEMBL
Match: A0A6J1I7Z2 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470449 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 2.1e-95
Identity = 253/327 (77.37%), Postives = 274/327 (83.79%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAFLSKVGNILRQGANK+IG DLQ S LSICQAVRWMSSMQSSKLF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGR+VRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 126 DRSRGFG----GGGGGYGGGGYGGGGGGYGGGGYGGGGTGGYGGGGAGGYGGGGSGGGYG 185
           DRSRG G    GGGGGYGGGG  GGGGGYGGGGYGG   GGYGGGG GGYGGGGS GGYG
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGGYGGGGGYGGGGYGG---GGYGGGGPGGYGGGGS-GGYG 180

Query: 186 DGSG-----GYGSGGNYSSSFGGGSQ---GNYSNDFASANRGSVAGDGGFGGNDAGGYNA 245
           DGSG     GY SGGNY+++FGGGSQ   GNY N+FAS +RGSV+  GGFGGNDA GYN 
Sbjct: 181 DGSGGFSTTGYSSGGNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFGGNDA-GYN- 240

Query: 246 ASNFATGNTYDSGTNAGFGNVSGGGGDYFANSGSDARSGFGGYTGGKQFGSNETNTMDAS 305
           ASNF       SG ++G  NVSGGGGDYF+N GS+  SGFGGYTGG QF S ET++M+A 
Sbjct: 241 ASNF-------SGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDSMNAP 300

Query: 306 GDQGQEEPLEGNDRDE-DDADDFAKRA 320
           G  G  E LEGNDRDE DDA+DFAKRA
Sbjct: 301 G-SGLGEQLEGNDRDEDDDANDFAKRA 313

BLAST of CcUC06G125540 vs. ExPASy TrEMBL
Match: A0A6J1E1P2 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111430026 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 2.3e-94
Identity = 256/323 (79.26%), Postives = 271/323 (83.90%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAFLSKVGNILRQGANKR GL+ Q   LSI QAVRWMSSMQSSK+FIGGISYSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           EAF+KYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGR+VRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 126 DRSR-----GFGGGGGGYGGGGYGGGGGGYGGGGYGGGGTGGYGGGGAGGYGGGGSGGGY 185
           DRSR     G+GGGGGGYGGGGYGGGGGGYGGGG GG G G YGGGG G YGGG  GGG 
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGG-GGYGGGSYGGGG-GSYGGGSYGGG- 180

Query: 186 GDGSGGYG--SGGNYSSSFGGGSQGNYSNDFASANRGSVAGDGGFGGNDAGGYNAASNFA 245
           G G GGYG  SGG + S F  G   NYS+ F S ++GS  G+ G GGNDAG  NAASNFA
Sbjct: 181 GSGGGGYGGESGGGFGSGFSAGD--NYSSSFGSGSQGS-GGNYGTGGNDAGS-NAASNFA 240

Query: 246 TGNTYDSGTNAGFG-NVSGGGGDYFANSGSDARSGFGGYTGGKQFGSNETNTMDASGDQG 305
           +GNT+ SGT+AGF  NVS GGGDYFANSGSDA SGFGGYTGG QFGSNE NT++ASGDQG
Sbjct: 241 SGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQG 300

Query: 306 QEEPLEGNDRDEDD-ADDFAKRA 320
             E LEGNDRDEDD ADDFAKRA
Sbjct: 301 LGEQLEGNDRDEDDNADDFAKRA 316

BLAST of CcUC06G125540 vs. ExPASy TrEMBL
Match: A0A6J1EZK6 (glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111440991 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 6.6e-94
Identity = 255/323 (78.95%), Postives = 272/323 (84.21%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAFLSKVGNILRQGANKRIG DLQ   LSICQAVRWMSSMQSSKLF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGR+VRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 126 DRSRGFGGGGGGYGGGGYGGGGGGYGGGGYGGGGTGGYGGGGAGGYGGGGSGGGYGDGSG 185
           DRSRG GGGG G GGGGYGGGG G GGGGYGGG  GGYG GGAGGYGGGGS GGYGDGSG
Sbjct: 121 DRSRGVGGGGYG-GGGGYGGGGYG-GGGGYGGG--GGYGDGGAGGYGGGGS-GGYGDGSG 180

Query: 186 -----GYGSGGNYSSSFGGGSQ---GNYSNDFASANRGSVAGDGGFGGNDAGGYNAASNF 245
                GY SGGNYS++FGGGSQ   GNY N+FAS +RGSV+  GGFGGNDA GYN ASNF
Sbjct: 181 GFSTTGYSSGGNYSNNFGGGSQGSGGNYGNEFASDSRGSVSTGGGFGGNDA-GYN-ASNF 240

Query: 246 ATGNTYDSGTNAGFGNVSGGGGDYFANSGSDARSGFGGYTGGKQFGSNETNTMDASGDQG 305
                  SG ++G  NVSGGGGDYF+N GS+  SGFGGYTGG QF S ET+TM+A G  G
Sbjct: 241 -------SGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDTMNAPG-SG 300

Query: 306 QEEPLEGNDRDE-DDADDFAKRA 320
             E LEGNDRDE DDADDFAKRA
Sbjct: 301 LGEQLEGNDRDEDDDADDFAKRA 308

BLAST of CcUC06G125540 vs. ExPASy TrEMBL
Match: A0A6J1JKW7 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485357 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 1.4e-91
Identity = 256/332 (77.11%), Postives = 271/332 (81.63%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAFLSKVGNILRQ ANKR GL+LQ   LSICQAVRWMSSMQSSK+F+GGISYSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQSANKRTGLNLQAPSLSICQAVRWMSSMQSSKVFVGGISYSTDDQSLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           EAF+KYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGR+VRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 126 DRSRGFGGG-GGGYGGGGYGGGGGGYGGGGYG----GGGTGGYGGGG----AGGYGGGGS 185
           DRSRG GGG GGGYGGGG G GGGGYGGGGYG    GGG+GGYGGGG     G YGGGGS
Sbjct: 121 DRSRGMGGGYGGGYGGGGGGYGGGGYGGGGYGGGGYGGGSGGYGGGGGSYSGGAYGGGGS 180

Query: 186 -GGGYGDGSG-----GYGSGGNYSSSFGGGSQGNYSNDFASANRGSVAGDGGFGGNDAGG 245
            GGGYG  SG     G+ +G NYSSSFGGGSQG+              G+ G GGNDAG 
Sbjct: 181 GGGGYGGESGGGFGSGFSTGDNYSSSFGGGSQGS-------------GGNYGTGGNDAGS 240

Query: 246 YNAASNFATGNTYDSGTNAGFG-NVSGGGGDYFANSGSDARSGFGGYTGGKQFGSN-ETN 305
            N+ASNFA+GN   SGT+AGF  NVS GGGDYFANSGSDA SGFGGYTGG QFGSN E N
Sbjct: 241 -NSASNFASGN---SGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNDEAN 300

Query: 306 TMDASGDQGQEEPLEGNDRDEDD-ADDFAKRA 320
           T++ASGDQG  E LEGNDRDEDD ADDFAKRA
Sbjct: 301 TLNASGDQGLGEQLEGNDRDEDDNADDFAKRA 315

BLAST of CcUC06G125540 vs. ExPASy TrEMBL
Match: A0A6J1I6P9 (glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470449 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 2.6e-90
Identity = 239/318 (75.16%), Postives = 263/318 (82.70%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAFLSKVGNILRQGANK+IG DLQ S LSICQAVRWMSSMQSSKLF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGR+VRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 126 DRSRGFGGGGGGYGGGGYGGGGGGYGGGGYGGGGTGGYGGGGAGGYGGGGSGGGYGDGSG 185
           DRSRG GGGG         GGGGGYGGGGYGGGG GGYGGGG+GGYG G   GG+   + 
Sbjct: 121 DRSRGVGGGG--------YGGGGGYGGGGYGGGGPGGYGGGGSGGYGDG--SGGF--STT 180

Query: 186 GYGSGGNYSSSFGGGSQ---GNYSNDFASANRGSVAGDGGFGGNDAGGYNAASNFATGNT 245
           GY SGGNY+++FGGGSQ   GNY N+FAS +RGSV+  GGFGGNDA GYN ASNF     
Sbjct: 181 GYSSGGNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFGGNDA-GYN-ASNF----- 240

Query: 246 YDSGTNAGFGNVSGGGGDYFANSGSDARSGFGGYTGGKQFGSNETNTMDASGDQGQEEPL 305
             SG ++G  NVSGGGGDYF+N GS+  SGFGGYTGG QF S ET++M+A G  G  E L
Sbjct: 241 --SGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDSMNAPG-SGLGEQL 296

Query: 306 EGNDRDE-DDADDFAKRA 320
           EGNDRDE DDA+DFAKRA
Sbjct: 301 EGNDRDEDDDANDFAKRA 296

BLAST of CcUC06G125540 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 192.2 bits (487), Expect = 6.4e-49
Identity = 178/335 (53.13%), Postives = 218/335 (65.07%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAFLSK GNIL+Q  NK++   +  S  S+ QA+R MS   SSKLFIGG++YS D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           EAF+KYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 126 DRSR-------GFGGGGGGYGG-GGYGGGGGGYGG--------GGYGGGGTGGYGGGGAG 185
           DR+        G+GGGGGGYGG GGYGGG GGYGG        GGYGG   GGYGG  AG
Sbjct: 121 DRTSGGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGNAAG 180

Query: 186 GYGGGGSGGGYGDGSGGYGSGGNYSSSFGGGSQGNYSNDFASANRGSVAGDGGFGGNDAG 245
           GYGG G+GG  GD +G  G+GG Y SS G GS GN   + +SA+ G+V           G
Sbjct: 181 GYGGSGAGGYGGDATGHGGAGGGYGSSGGFGSSGNTYGEGSSASAGAV-----------G 240

Query: 246 GYNAASNFATGNTYDSGTNAGFGNVSGGGGDYFANSGSDARSGFGG----YTGGKQF-GS 305
            YN +S + + NTY S +N GF   S  GG    NS     S FGG    +T G QF G 
Sbjct: 241 DYNGSSGYGSANTYGS-SNGGFAGDSQFGGSPVGNS-----SQFGGDNTQFTAGGQFGGE 300

Query: 306 NETNTMDASGDQGQEEPLEGNDRDEDDADDFAKRA 320
           ++  +M+ S  + ++ P+ G      + +D AKRA
Sbjct: 301 DQFGSMEKSETKMEDGPIGG------EFEDVAKRA 309

BLAST of CcUC06G125540 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 135.6 bits (340), Expect = 7.1e-32
Identity = 156/321 (48.60%), Postives = 192/321 (59.81%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAFLSKVG +  Q ++         +  S+ Q++R MS   SSK+F+GGISYSTD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSH------VTASSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           EAFSKYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLHGR++RVNYA 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 126 DRSRGFGGGGGGYGGGGYGGGGGGYG--GGGYGGGGTGGYGG-----GGAGGYGGGGSGG 185
           +R  GFGG G G  GGGYG   GGYG   GGY GGG GGYGG     G AGG GG G   
Sbjct: 121 ERGSGFGGRGFGGPGGGYGASDGGYGAPAGGY-GGGAGGYGGNSSYSGNAGGGGGYGGNS 180

Query: 186 GYGDGSGGYGSGGNYSSSFGGGSQGNYSNDFASANRGSVAGDGGFGGNDAGGYNAASNFA 245
            YG  +GGYG    YS +  GG  G Y ++F         G GG+G   AGG   + NFA
Sbjct: 181 SYGGNAGGYGGNPPYSGNAVGGG-GGYGSNF--------GGGGGYG--VAGGVGGSENFA 240

Query: 246 TGNTYDSGTNAGFGNVSGGGGDYFANSGSDARSGFGGYTGGKQFGSNETNTMDASGDQGQ 305
            G    S TNAGF +          ++     SG G   G +QFG ++    DA     +
Sbjct: 241 QG----SSTNAGFDDKFESNQPLGNDTDHQTESGLG---GDEQFGGSDNQFGDAENGNTE 289

Query: 306 EEPLEGNDRDEDDADDFAKRA 320
             P+     D+ D  D AKRA
Sbjct: 301 NGPV---GFDQTDDGDVAKRA 289

BLAST of CcUC06G125540 vs. TAIR 10
Match: AT4G13850.2 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-28
Identity = 88/160 (55.00%), Postives = 116/160 (72.50%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAF +K+G +LRQ  +    + +     S+  ++R M    S+KLFIGG+S+ TDD SLR
Sbjct: 1   MAFCNKLGGLLRQNISSNGNVPV----TSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           +AF+ +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+GR +RVN AN
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 126 DR---SRGFGGGGG---GYGGGGYGGGGGGYGGGGYGGGG 160
           DR    R +GGGGG   G GGGGYGGGGGGYGGGG GGGG
Sbjct: 121 DRPSAPRAYGGGGGYSYGGGGGGYGGGGGGYGGGGDGGGG 152

BLAST of CcUC06G125540 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-26
Identity = 95/177 (53.67%), Postives = 123/177 (69.49%), Query Frame = 0

Query: 6   MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 65
           MAF +K+G +LRQ  +    + +     S+  ++R M    S+KLFIGG+S+ TDD SLR
Sbjct: 1   MAFCNKLGGLLRQNISSNGNVPV----TSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 66  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYAN 125
           +AF+ +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+GR +RVN AN
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 126 DR---SRGFGGGGGGYGGGGYGGGGGGYGGGGYGGGGTGGYGGGGAGGYGGGGSGGG 180
           DR    R +G      GGGGY GGGGGYGGGG      GGYGGGG GGYGGGG GGG
Sbjct: 121 DRPSAPRAYG------GGGGYSGGGGGYGGGG------GGYGGGG-GGYGGGGDGGG 156

BLAST of CcUC06G125540 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 87.0 bits (214), Expect = 2.9e-17
Identity = 89/166 (53.61%), Postives = 111/166 (66.87%), Query Frame = 0

Query: 49  KLFIGGISYSTDDQSLREAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 108
           + F+GG++++TDD++L  AF++YG+VI++++I DRETGRSRGFGFVT+   +    AI+ 
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query: 109 LDGQDLHGRQVRVNYANDRSRG-----FGGGGGGY---GGGGYGGGGGGYGGGGYGGGGT 168
           ++GQDL GR + VN A  R  G      GGGGGGY   GGGGY GGGG YGGGG    G 
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGGGGGRREGG 128

Query: 169 GGYGGGGAG----GYGGGGSGGGYGDGSGGY--GSGGNYSSSFGGG 201
           GGY GGG G    G GGG  GGG  +G GGY  G GG Y  S GGG
Sbjct: 129 GGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGGG 174

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038878732.12.7e-11082.48glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida][more]
KAG6589603.19.1e-9878.85Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosper... [more]
KAG6587583.11.1e-9578.83Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosper... [more]
XP_022971767.14.2e-9577.37glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita max... [more]
XP_023530847.14.2e-9578.46glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pe... [more]
Match NameE-valueIdentityDescription
Q9FNR19.0e-4853.13Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q9C9091.0e-3048.60Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q9SVM83.7e-2553.67Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q434721.1e-2160.90Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=... [more]
P493117.4e-1856.89Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1I7Z22.1e-9577.37glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita m... [more]
A0A6J1E1P22.3e-9479.26glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=... [more]
A0A6J1EZK66.6e-9478.95glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucurbita moschata OX=... [more]
A0A6J1JKW71.4e-9177.11glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita m... [more]
A0A6J1I6P92.6e-9075.16glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita m... [more]
Match NameE-valueIdentityDescription
AT5G61030.16.4e-4953.13glycine-rich RNA-binding protein 3 [more]
AT1G74230.17.1e-3248.60glycine-rich RNA-binding protein 5 [more]
AT4G13850.22.8e-2855.00glycine-rich RNA-binding protein 2 [more]
AT4G13850.12.6e-2653.67glycine-rich RNA-binding protein 2 [more]
AT2G21660.12.9e-1753.61cold, circadian rhythm, and rna binding 2 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 145..160
score: 60.16
coord: 171..181
score: 53.41
coord: 214..232
score: 34.87
coord: 44..60
score: 23.53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 278..295
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 273..319
NoneNo IPR availablePANTHERPTHR48027:SF9GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIALcoord: 6..158
NoneNo IPR availablePANTHERPTHR48027HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATEDcoord: 6..158
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 49..122
e-value: 1.7E-30
score: 117.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 50..120
e-value: 3.2E-23
score: 81.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 48..126
score: 22.435411
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 41..164
e-value: 2.4E-35
score: 123.7
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 45..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G125540.1CcUC06G125540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding