CcUC06G125230 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G125230
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	cysteine-rich and transmembrane domain-containing protein B-like
Location	CicolChr06: 27659848 .. 27660702 (-)
RNA-Seq Expression	CcUC06G125230
Synteny	CcUC06G125230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTACTTCGCTCCTCCATTTGATTTCATACATATTATTCCCCTTGAGGCAGTTGGGCAGCATTAAGAATGTATCTTGTTGTTATGCATTTGGAGTTATAATTTTGGTGGTGTCTTGCTGTGATGCAGCAGGTTACCTAATTTTCAAAAGAACTGCCTATTTTCTTTCCTCACAAACAACTGCTAACATTGTATCCTTCCGTCAGTAGGTGTAGAAATTTGTAGAAGTTTACAAAGAAAAGCAACCACTCCACAATCCATTATATCTTTTATGTGCAAAAGTGCAACACCTTGAATCCTCGCCCTGTTTTATATCTTGCCTAATTCAATGCAAATTCTACCTTCTAACAATCAAAGTCAAAGAGTTCAAAAACATGAAACAAAATTTTCAGAACCAACCTCAAGGTCATCCCTCATTTTCTTCTATCAATAATTGTTCTCTAGTTGTAGCTACTTTTGCAAGAGATGATGCTGAAATAGAAAGGAAAATCCACTAAAGTAAAGAATTATTCATGCCAGATGATTTGATTTCCATATAAAGTAATAAGTAACTTTGCAATTTTCATCTCTACTTTTTCTTGTTCTCTATAGTTTCCTTTGAAGGGGAAAACAAAAGGAAAGATCATAAATTATTGTAGGACAGTTTGTTCTGAATTTATTGTCTCTAGCATAATTTTATAGATACTGGACCAGGTCCTTACCCAGTAGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTACCTTCTCAAGGGGAAACCAAGTCTCAAACTGTACCTCCTTCAAGTGAAACTAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTGTAA

mRNA sequence

ATGTTTACTTCGCTCCTCCATTTGATTTCATACATATTATTCCCCTTGAGGCAGTTGGGCAGCATTAAGAATGTATCTTGTTGTTATGCATTTGGAGTTATAATTTTGGTGGTGTCTTGCTGTGATGCAGCAGGTTACCTAATTTTCAAAAGAACTGCCTATTTTCTTTCCTCACAAACAACTGCTAACATTCATAATTTTATAGATACTGGACCAGGTCCTTACCCAGTAGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTACCTTCTCAAGGGGAAACCAAGTCTCAAACTGTACCTCCTTCAAGTGAAACTAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTGTAA

Coding sequence (CDS)

ATGTTTACTTCGCTCCTCCATTTGATTTCATACATATTATTCCCCTTGAGGCAGTTGGGCAGCATTAAGAATGTATCTTGTTGTTATGCATTTGGAGTTATAATTTTGGTGGTGTCTTGCTGTGATGCAGCAGGTTACCTAATTTTCAAAAGAACTGCCTATTTTCTTTCCTCACAAACAACTGCTAACATTCATAATTTTATAGATACTGGACCAGGTCCTTACCCAGTAGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTACCTTCTCAAGGGGAAACCAAGTCTCAAACTGTACCTCCTTCAAGTGAAACTAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTGTAA

Protein sequence

MFTSLLHLISYILFPLRQLGSIKNVSCCYAFGVIILVVSCCDAAGYLIFKRTAYFLSSQTTANIHNFIDTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL

Homology

[Close]

BLAST of CcUC06G125230 vs. NCBI nr
Match: KAE8652444.1 (hypothetical protein Csa_013973 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-23
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 65  HNFIDTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRG 124
           HNFIDTGPGPY VAPPMCDPMQHGQ+QPYPPIVP QGETKS+TVPPS +TK RGDGFCRG
Sbjct: 65  HNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRG 124

Query: 125 L 126
           L
Sbjct: 125 L 125

[Close]

BLAST of CcUC06G125230 vs. NCBI nr
Match: KAA0058026.1 (hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-19
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 69  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL 126
           DTGPGPY V PP CDPMQHGQ+QPYPPIVP QGETKS+TVPPS +TK RGDGFCRGL
Sbjct: 21  DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL 77

[Close]

BLAST of CcUC06G125230 vs. NCBI nr
Match: XP_022969088.1 (cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxima])

HSP 1 Score: 102.1 bits (253), Expect = 3.7e-18
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 69  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL 126
           DTGPGPYPVAPPMCDPMQHGQSQPY  I+P QGETKSQ V P  ET S+GDGFCRGL
Sbjct: 11  DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

[Close]

BLAST of CcUC06G125230 vs. NCBI nr
Match: KAG7021578.1 (hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-17
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 69  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL 126
           DTGPGPYPVAPPMCDPMQHGQSQPY  I+P QGETK Q V P  ET S+GDGFCRGL
Sbjct: 11  DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGL 67

[Close]

BLAST of CcUC06G125230 vs. NCBI nr
Match: KAG6587617.1 (hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 81  MCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL 126
           MCDPMQHGQSQPY  I+P QGETK Q V P  ET S+GDGFCRGL
Sbjct: 1   MCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGL 45

[Close]

BLAST of CcUC06G125230 vs. ExPASy TrEMBL
Match: A0A0A0LPD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.2e-24
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 65  HNFIDTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRG 124
           HNFIDTGPGPY VAPPMCDPMQHGQ+QPYPPIVP QGETKS+TVPPS +TK RGDGFCRG
Sbjct: 63  HNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRG 122

Query: 125 L 126
           L
Sbjct: 123 L 123

[Close]

BLAST of CcUC06G125230 vs. ExPASy TrEMBL
Match: A0A5A7UV38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003310 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 69  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL 126
           DTGPGPY V PP CDPMQHGQ+QPYPPIVP QGETKS+TVPPS +TK RGDGFCRGL
Sbjct: 21  DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL 77

[Close]

BLAST of CcUC06G125230 vs. ExPASy TrEMBL
Match: A0A6J1HZZ2 (cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111468187 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.8e-18
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 69  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL 126
           DTGPGPYPVAPPMCDPMQHGQSQPY  I+P QGETKSQ V P  ET S+GDGFCRGL
Sbjct: 11  DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

The following BLAST results are available for this feature:

BLAST of CcUC06G125230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652444.1	1.7e-23	88.52	hypothetical protein Csa_013973 [Cucumis sativus]	[more]
KAA0058026.1	2.5e-19	84.21	hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa]	[more]
XP_022969088.1	3.7e-18	82.46	cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxi...	[more]
KAG7021578.1	1.4e-17	80.70	hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6587617.1	1.1e-09	75.56	hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC06G125230 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G125230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPD8	8.2e-24	88.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1	[more]
A0A5A7UV38	1.2e-19	84.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1HZZ2	1.8e-18	82.46	cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita ma...	[more]

BLAST of CcUC06G125230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G125230.1	CcUC06G125230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane