CcUC06G122400 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G122400
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Retrotransposon protein
Location	CicolChr06: 24783405 .. 24784434 (+)
RNA-Seq Expression	CcUC06G122400
Synteny	CcUC06G122400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCATCCGGGTCACGCGCAAGAGCCGCAAAACATATATGGACGGATGAGGAGGATAGAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCGAGCTGATAACGGGACTTTCCGACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAGGATATCAGGGTGTTCCATACAGATCAGCCCACATCTGAAGTCAAGGGTCAGAACTCTAAAGAGACAGTACAGCGCGATCGCTGAAATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCGCAAATGTATTGATTGTGAGGCAGAAATATTTGACGCATGGGTCAAGGTAATTTAATTACATGTTTTATTTATTTCTTATTCGTTTAAATTTGAATAGACCATCACATAACACAAGCCACCTTTAACAGAGTCATCTGAGTGCAAAAAGACTGCGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTGTGGAAGAGGAGAACGAGGACATCCTGAACAACCAGGACATTGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTTCTAGCTCGCCCCCGTCAGAGGACTTTTCGACTACCCCAAGCGGTAGAGAGTCTAGGAGTAGCTTGCCATCAAGGAGTAGGAGGTCCCGAAGTTCATCGATTGGAGAGTACAACGAGGTGGTTCATGAGGGGTTCCAACTTCTGACGAAGTCTATTGACGGCATTGCACAGTGGCCTGTCATCAACGAGGACCTGGCAAGGCGTCGTCGTCAAGAACTATATGCCGAGCTGCAATCCATTCCTGGTCTGTCGGTACAAGATGGATTGACTGTTGCATGGTCATTGCTTGCAGATCTGATGTTGTTAAGCCACTTTGTGGACTTCCCACCACAGTGGAAGTATGACTATTGCATGCAAGTCCTCGGGCGACAACGGGATCCAACACCATGA

mRNA sequence

ATGGAAGCATCCGGGTCACGCGCAAGAGCCGCAAAACATATATGGACGGATGAGGAGGATAGAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCGAGCTGATAACGGGACTTTCCGACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAGGATATCAGGGTGTTCCATACAGATCAGCCCACATCTGAAGTCAAGGGTCAGAACTCTAAAGAGACAGTACAGCGCGATCGCTGAAATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCGCAAATGTATTGATTGTGAGGCAGAAATATTTGACGCATGGGTCAAGAGTCATCTGAGTGCAAAAAGACTGCGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTGTGGAAGAGGAGAACGAGGACATCCTGAACAACCAGGACATTGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTTCTAGCTCGCCCCCGTCAGAGGACTTTTCGACTACCCCAAGCGGTAGAGAGTCTAGGAGTAGCTTGCCATCAAGGAGTAGGAGGTCCCGAAGTTCATCGATTGGAGAGTACAACGAGGTGTGGCCTGTCATCAACGAGGACCTGGCAAGGCGTCGTCGTCAAGAACTATATGCCGAGCTGCAATCCATTCCTGGTCTGTCGGTACAAGATGGATTGACTGTTGCATGGTCATTGCTTGCAGATCTGATGTTGTTAAGCCACTTTGTGGACTTCCCACCACAGTGGAAGTATGACTATTGCATGCAAGTCCTCGGGCGACAACGGGATCCAACACCATGA

Coding sequence (CDS)

ATGGAAGCATCCGGGTCACGCGCAAGAGCCGCAAAACATATATGGACGGATGAGGAGGATAGAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCGAGCTGATAACGGGACTTTCCGACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAGGATATCAGGGTGTTCCATACAGATCAGCCCACATCTGAAGTCAAGGGTCAGAACTCTAAAGAGACAGTACAGCGCGATCGCTGAAATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCGCAAATGTATTGATTGTGAGGCAGAAATATTTGACGCATGGGTCAAGAGTCATCTGAGTGCAAAAAGACTGCGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTGTGGAAGAGGAGAACGAGGACATCCTGAACAACCAGGACATTGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTTCTAGCTCGCCCCCGTCAGAGGACTTTTCGACTACCCCAAGCGGTAGAGAGTCTAGGAGTAGCTTGCCATCAAGGAGTAGGAGGTCCCGAAGTTCATCGATTGGAGAGTACAACGAGGTGTGGCCTGTCATCAACGAGGACCTGGCAAGGCGTCGTCGTCAAGAACTATATGCCGAGCTGCAATCCATTCCTGGTCTGTCGGTACAAGATGGATTGACTGTTGCATGGTCATTGCTTGCAGATCTGATGTTGTTAAGCCACTTTGTGGACTTCCCACCACAGTGGAAGTATGACTATTGCATGCAAGTCCTCGGGCGACAACGGGATCCAACACCATGA

Protein sequence

MEASGSRARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRISGCSIQISPHLKSRVRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSAKRLRHKSFPYYDDLAIVFGKDRATGSHATTTAEVGSEPVVEEENEDILNNQDIDFENFYIPDPPFSSSPPSEDFSTTPSGRESRSSLPSRSRRSRSSSIGEYNEVWPVINEDLARRRRQELYAELQSIPGLSVQDGLTVAWSLLADLMLLSHFVDFPPQWKYDYCMQVLGRQRDPTP

Homology

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BLAST of CcUC06G122400 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-51
Identity = 124/300 (41.33%), Postives = 163/300 (54.33%), Query Frame = 0


Query: 6   SRARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRISGCSIQ 65
           S +RA KH WT EE+   VECLV+ V SG WR+DNGTF+PG+L+ + RMM +++ G +IQ
Sbjct: 3   SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 66  ISPHLKSRVRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSAKRLR 125
            S  +   V++LK+ Y AIAEM GP CSGFGWN E +CI  E ++FD+W+KSH +AK L 
Sbjct: 63  ESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLL 122

Query: 126 HKSFPYYDDLAIVFGKDRATGSHATTTAEVGSEPVVEEENEDIL--NNQDIDFENFYIPD 185
           HKSFPYYDDL+ VFGKDRATG+ + T   VGS  V    N+ I   ++ D D    Y   
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSN-VSNMFNDTIPLGDSHDEDIPTMYSQG 182

Query: 186 PPFSSSPPSEDFSTTPSGRESRSSLPSRSRRSRSSSIGEYNEV----------------- 245
              S   P E F         R +  S S+R R S   E  EV                 
Sbjct: 183 VHMS---PDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIAD 242

Query: 246 WPVINEDLARRRRQELYAELQSIPGLSVQDGLTVAWSLLADLMLLSHFVDFPPQWKYDYC 287
           WP     +    R ++  +LQ IP L  QD   +   L   L  +  F+  P + K +YC
Sbjct: 243 WPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYC 298

[Close]

BLAST of CcUC06G122400 vs. NCBI nr
Match: KAA0057083.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 3.9e-50
Identity = 124/301 (41.20%), Postives = 172/301 (57.14%), Query Frame = 0


Query: 6   SRARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRISGCSIQ 65
           S +R  KH WT EE+  LVECLV+ V +G WR+DNGTFRPG+L+ + RMM  +I G +I 
Sbjct: 3   SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIH 62

Query: 66  ISPHLKSRVRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSAKRLR 125
            S  + SR++ +KR + A+AEM GP CSGFGWN E+KCI  E E+FD W  SH +AK L 
Sbjct: 63  AST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLL 122

Query: 126 HKSFPYYDDLAIVFGKDRATGSHATTTAEVGSE--PVVEEENEDILNNQDIDFENFYIPD 185
           +KSF +YD+L+ VFGKDRATG  A + A++GS   P  + E  D +   D DF   Y P 
Sbjct: 123 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAM--PDTDFPPMYSPG 182

Query: 186 PPFSSSPPSEDFSTTPSGRESRSSLPSRSRRSRSSSIG-------EY-NE------VWPV 245
              S     E  +   S R + SS   R R   ++  G       EY NE       WP+
Sbjct: 183 LNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPI 242

Query: 246 INEDLARRRRQELYAELQSIPGLSVQDGLTVAWSLLADLMLLSHFVDFPPQWKYDYCMQV 291
           +    A + RQE+   L++IP L++ D   +   L+ ++  +  F++ P   KY YC  +
Sbjct: 243 LQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLI 298

[Close]

BLAST of CcUC06G122400 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 1.1e-49
Identity = 101/215 (46.98%), Postives = 145/215 (67.44%), Query Frame = 0


Query: 8   ARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRISGCSIQIS 67
           ++  KH WT  ED  LVECL+Q V+ G WR DNGTF+PG+L  + ++M+++I   +IQ++
Sbjct: 91  SKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESNIQVT 150

Query: 68  PHLKSRVRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSAKRLRHK 127
           P+L+S V+ LK+QY+ IAEM+GP CSGF WN ERKCI+ E  + + WVK HL+A+ L +K
Sbjct: 151 PNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNK 210

Query: 128 SFPYYDDLAIVFGKDRATGSHATTTAEVGSEPVVEEENEDILNNQDIDFENFYIPDPPFS 187
            FPY+ DL IVFG+DRATG    T  E+GS+   + E +D++    I+ E+F IP+P   
Sbjct: 211 PFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMI----INLEDFDIPNPHGL 270

Query: 188 SSPPSEDFSTTPS--GRESRSSLPSRSRRSRSSSI 221
             P  ED  +TP+    ++ SS PS+ RRS S  +
Sbjct: 271 EPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSRDL 301

[Close]

BLAST of CcUC06G122400 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 1.9e-49
Identity = 118/267 (44.19%), Postives = 160/267 (59.93%), Query Frame = 0


Query: 6   SRARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRISGCSIQ 65
           S +R  KH WT EE+  LVECLV+ V +G WR+DNGTFRPG+L+ ++RMM  +I GC+I 
Sbjct: 3   SSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIH 62

Query: 66  ISPHLKSRVRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSAKRLR 125
            S  + SR++ +KR + A+AEM GP CSGFGWN E+KCI  E E+FD WVKSH +AK L 
Sbjct: 63  AST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGLL 122

Query: 126 HKSFPYYDDLAIVFGKDRATGSHATTTAEVGSE--PVVEEENEDILNNQDIDFENFYIPD 185
           +KSF +YD+L+ VFGKDRATG  A + A++GS   P  +    D +   D DF   Y P 
Sbjct: 123 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAM--PDTDFPPMYSPG 182

Query: 186 PPFSSSPPSEDFSTTPSGRESRSSLPSRSRRSRSSSIG-------EY-NE------VWPV 245
              S     E  +   S R + SS   R R   ++  G       EY NE       WP+
Sbjct: 183 LNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPI 242

Query: 246 INEDLARRRRQELYAELQSIPGLSVQD 257
           +    A + RQE+  +L++IP L++ D
Sbjct: 243 LQRQDASQTRQEIVRQLEAIPELTLMD 266

[Close]

BLAST of CcUC06G122400 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 207.2 bits (526), Expect = 1.9e-49
Identity = 124/305 (40.66%), Postives = 172/305 (56.39%), Query Frame = 0


Query: 2   EASGSRARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRISG 61
           E   S +R  KH WT EE+  LVECLV+ V +G WR+DNGTFRPG+L+ + RMM  +I G
Sbjct: 354 EIMTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPG 413

Query: 62  CSIQISPHLKSRVRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSA 121
            +I  S  + SR++ +KR + A+AEM GP CSGFGWN E+KCI  E E+FD W  SH +A
Sbjct: 414 SNIHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAA 473

Query: 122 KRLRHKSFPYYDDLAIVFGKDRATGSHATTTAEVGSE--PVVEEENEDILNNQDIDFENF 181
           K L +KSF +YD+L+ VFGKDRATG  A + A++GS   P  +    D +   D DF   
Sbjct: 474 KGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAM--PDTDFPPM 533

Query: 182 YIPDPPFSSSPPSEDFSTTPSGRESRSSLPSRSRRSRSSSIG-------EY-NE------ 241
           Y P    S     E  +   S R + SS   R R   ++  G       EY NE      
Sbjct: 534 YSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 593

Query: 242 VWPVINEDLARRRRQELYAELQSIPGLSVQDGLTVAWSLLADLMLLSHFVDFPPQWKYDY 291
            WP++    A + RQE+   L++IP L++ D   +   L+ ++  +  F++ P   KY Y
Sbjct: 594 EWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 653

[Close]

BLAST of CcUC06G122400 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.0e-51
Identity = 124/300 (41.33%), Postives = 163/300 (54.33%), Query Frame = 0


Query: 6   SRARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRISGCSIQ 65
           S +RA KH WT EE+   VECLV+ V SG WR+DNGTF+PG+L+ + RMM +++ G +IQ
Sbjct: 3   SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 66  ISPHLKSRVRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSAKRLR 125
            S  +   V++LK+ Y AIAEM GP CSGFGWN E +CI  E ++FD+W+KSH +AK L 
Sbjct: 63  ESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLL 122

Query: 126 HKSFPYYDDLAIVFGKDRATGSHATTTAEVGSEPVVEEENEDIL--NNQDIDFENFYIPD 185
           HKSFPYYDDL+ VFGKDRATG+ + T   VGS  V    N+ I   ++ D D    Y   
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSN-VSNMFNDTIPLGDSHDEDIPTMYSQG 182

Query: 186 PPFSSSPPSEDFSTTPSGRESRSSLPSRSRRSRSSSIGEYNEV----------------- 245
              S   P E F         R +  S S+R R S   E  EV                 
Sbjct: 183 VHMS---PDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIAD 242

Query: 246 WPVINEDLARRRRQELYAELQSIPGLSVQDGLTVAWSLLADLMLLSHFVDFPPQWKYDYC 287
           WP     +    R ++  +LQ IP L  QD   +   L   L  +  F+  P + K +YC
Sbjct: 243 WPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYC 298

[Close]

BLAST of CcUC06G122400 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.0e-51
Identity = 124/300 (41.33%), Postives = 163/300 (54.33%), Query Frame = 0


Query: 6   SRARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRISGCSIQ 65
           S +RA KH WT EE+   VECLV+ V SG WR+DNGTF+PG+L+ + RMM +++ G +IQ
Sbjct: 3   SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 66  ISPHLKSRVRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSAKRLR 125
            S  +   V++LK+ Y AIAEM GP CSGFGWN E +CI  E ++FD+W+KSH +AK L 
Sbjct: 63  ESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLL 122

Query: 126 HKSFPYYDDLAIVFGKDRATGSHATTTAEVGSEPVVEEENEDIL--NNQDIDFENFYIPD 185
           HKSFPYYDDL+ VFGKDRATG+ + T   VGS  V    N+ I   ++ D D    Y   
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSN-VSNMFNDTIPLGDSHDEDIPTMYSQG 182

Query: 186 PPFSSSPPSEDFSTTPSGRESRSSLPSRSRRSRSSSIGEYNEV----------------- 245
              S   P E F         R +  S S+R R S   E  EV                 
Sbjct: 183 VHMS---PDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIAD 242

Query: 246 WPVINEDLARRRRQELYAELQSIPGLSVQDGLTVAWSLLADLMLLSHFVDFPPQWKYDYC 287
           WP     +    R ++  +LQ IP L  QD   +   L   L  +  F+  P + K +YC
Sbjct: 243 WPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYC 298

[Close]

BLAST of CcUC06G122400 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-50
Identity = 124/301 (41.20%), Postives = 172/301 (57.14%), Query Frame = 0


Query: 6   SRARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRISGCSIQ 65
           S +R  KH WT EE+  LVECLV+ V +G WR+DNGTFRPG+L+ + RMM  +I G +I 
Sbjct: 3   SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIH 62

Query: 66  ISPHLKSRVRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSAKRLR 125
            S  + SR++ +KR + A+AEM GP CSGFGWN E+KCI  E E+FD W  SH +AK L 
Sbjct: 63  AST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLL 122

Query: 126 HKSFPYYDDLAIVFGKDRATGSHATTTAEVGSE--PVVEEENEDILNNQDIDFENFYIPD 185
           +KSF +YD+L+ VFGKDRATG  A + A++GS   P  + E  D +   D DF   Y P 
Sbjct: 123 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAM--PDTDFPPMYSPG 182

Query: 186 PPFSSSPPSEDFSTTPSGRESRSSLPSRSRRSRSSSIG-------EY-NE------VWPV 245
              S     E  +   S R + SS   R R   ++  G       EY NE       WP+
Sbjct: 183 LNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPI 242

Query: 246 INEDLARRRRQELYAELQSIPGLSVQDGLTVAWSLLADLMLLSHFVDFPPQWKYDYCMQV 291
           +    A + RQE+   L++IP L++ D   +   L+ ++  +  F++ P   KY YC  +
Sbjct: 243 LQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLI 298

[Close]

BLAST of CcUC06G122400 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.5e-50
Identity = 101/215 (46.98%), Postives = 145/215 (67.44%), Query Frame = 0


Query: 8   ARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRISGCSIQIS 67
           ++  KH WT  ED  LVECL+Q V+ G WR DNGTF+PG+L  + ++M+++I   +IQ++
Sbjct: 91  SKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESNIQVT 150

Query: 68  PHLKSRVRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSAKRLRHK 127
           P+L+S V+ LK+QY+ IAEM+GP CSGF WN ERKCI+ E  + + WVK HL+A+ L +K
Sbjct: 151 PNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNK 210

Query: 128 SFPYYDDLAIVFGKDRATGSHATTTAEVGSEPVVEEENEDILNNQDIDFENFYIPDPPFS 187
            FPY+ DL IVFG+DRATG    T  E+GS+   + E +D++    I+ E+F IP+P   
Sbjct: 211 PFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMI----INLEDFDIPNPHGL 270

Query: 188 SSPPSEDFSTTPS--GRESRSSLPSRSRRSRSSSI 221
             P  ED  +TP+    ++ SS PS+ RRS S  +
Sbjct: 271 EPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSRDL 301

[Close]

BLAST of CcUC06G122400 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 9.3e-50
Identity = 118/267 (44.19%), Postives = 160/267 (59.93%), Query Frame = 0


Query: 6   SRARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRISGCSIQ 65
           S +R  KH WT EE+  LVECLV+ V +G WR+DNGTFRPG+L+ ++RMM  +I GC+I 
Sbjct: 3   SSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIH 62

Query: 66  ISPHLKSRVRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSAKRLR 125
            S  + SR++ +KR + A+AEM GP CSGFGWN E+KCI  E E+FD WVKSH +AK L 
Sbjct: 63  AST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGLL 122

Query: 126 HKSFPYYDDLAIVFGKDRATGSHATTTAEVGSE--PVVEEENEDILNNQDIDFENFYIPD 185
           +KSF +YD+L+ VFGKDRATG  A + A++GS   P  +    D +   D DF   Y P 
Sbjct: 123 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAM--PDTDFPPMYSPG 182

Query: 186 PPFSSSPPSEDFSTTPSGRESRSSLPSRSRRSRSSSIG-------EY-NE------VWPV 245
              S     E  +   S R + SS   R R   ++  G       EY NE       WP+
Sbjct: 183 LNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPI 242

Query: 246 INEDLARRRRQELYAELQSIPGLSVQD 257
           +    A + RQE+  +L++IP L++ D
Sbjct: 243 LQRQDASQTRQEIVRQLEAIPELTLMD 266

[Close]

BLAST of CcUC06G122400 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-14
Identity = 66/237 (27.85%), Postives = 117/237 (49.37%), Query Frame = 0


Query: 15  WTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRISGCSIQISPHLKSRV 74
           W+ EE ++LV+ LV+ + + +WR  NGT     +     M +     C  +   H  SR+
Sbjct: 17  WSPEETKLLVQLLVEGI-NNNWRDSNGTISKLTVETKF-MPEINKEFCRSKNYNHYLSRM 76

Query: 75  RTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSAKRLRHKSFPYYDD 134
           + LK QY +  + L    SGFGW+   K      E++  ++K+H + K+LR+ +F ++D+
Sbjct: 77  KYLKIQYQSCLD-LQRFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDE 136

Query: 135 LAIVFGKDRATGSHATTTAEVGSEPVVEEENEDILNNQDIDFENFYIPDPPFSSSPPSED 194
           L I+FG+  ATG +A    +  ++ +     E+       DF+N Y  D   +    SE 
Sbjct: 137 LQIIFGEGVATGKNAIGLCD-STDGLTYRAGENPRKEYVDDFDNVYEYDTT-THHESSEH 196

Query: 195 FSTTPS-GRESRSSLP--SRSRRSRSSSIGEYNEVWPVINE--DLARRRRQELYAEL 247
           ++   S G      LP   R+R  RS+S  E + +  V ++  D+ ++R +    E+
Sbjct: 197 YAPFMSHGTSESPKLPPRKRTRSERSTSQKEESPMMVVSSKILDIIQQREERQQNEV 248

[Close]

BLAST of CcUC06G122400 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-11
Identity = 56/190 (29.47%), Postives = 94/190 (49.47%), Query Frame = 0


Query: 15  WTDEEDRILVECLVQCVQSGHWRADNGTF-RPGFLSNILRMMQQRISGCSIQISPHLKSR 74
           WT +E  +L+E + Q     +WR  +G   +    S +L  + +R+ GC+     ++ SR
Sbjct: 17  WTPDETDVLIELIRQ-----NWRDSSGIIGKLTVESKLLPALNKRL-GCNKNHKNYM-SR 76

Query: 75  VRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSAKRLRHKSFPYYD 134
           ++ LK  Y +  + L    SGFGW+ E K      E++  ++K+H + K ++ +S  +++
Sbjct: 77  LKFLKNLYQSYLD-LKRFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHFE 136

Query: 135 DLAIVFGKDRATGSHATTTAEVGSE---PVVEEENEDILNNQDIDFENFYIPDPPFS-SS 194
           DL I+FG   ATGS A   ++        V E        NQD + E  Y     FS   
Sbjct: 137 DLQIIFGDVVATGSFAVGMSDSTCPRIYTVGERSQGKETVNQDENIEEVY----EFSFQH 194

Query: 195 PPSEDFSTTP 200
           P S ++ST+P
Sbjct: 197 PSSAEYSTSP 194

[Close]

BLAST of CcUC06G122400 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 6.5e-11
Identity = 33/139 (23.74%), Postives = 69/139 (49.64%), Query Frame = 0


Query: 3   ASGSRARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRI-SG 62
           + GS     +  W    DR  ++ ++   + G+     G FR    + ++ +   +  S 
Sbjct: 174 SKGSSVTRCRTTWHPPMDRYFIDLMLDQARRGN--QIEGVFRKQAWTEMVNLFNAKFESN 233

Query: 63  CSIQISPHLKSRVRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSA 122
             + +   LK+R ++L+RQ++AI  +L     GF W+ ER+ +  +  ++  ++K+H  A
Sbjct: 234 FDVDV---LKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDA 293

Query: 123 KRLRHKSFPYYDDLAIVFG 141
           ++   +  PYY DL ++ G
Sbjct: 294 RQFMTRPIPYYKDLCVLCG 305

[Close]

BLAST of CcUC06G122400 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 65.9 bits (159), Expect = 6.5e-11
Identity = 33/139 (23.74%), Postives = 69/139 (49.64%), Query Frame = 0


Query: 3   ASGSRARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRI-SG 62
           + GS     +  W    DR  ++ ++   + G+     G FR    + ++ +   +  S 
Sbjct: 174 SKGSSVTRCRTTWHPPMDRYFIDLMLDQARRGN--QIEGVFRKQAWTEMVNLFNAKFESN 233

Query: 63  CSIQISPHLKSRVRTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSA 122
             + +   LK+R ++L+RQ++AI  +L     GF W+ ER+ +  +  ++  ++K+H  A
Sbjct: 234 FDVDV---LKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDA 293

Query: 123 KRLRHKSFPYYDDLAIVFG 141
           ++   +  PYY DL ++ G
Sbjct: 294 RQFMTRPIPYYKDLCVLCG 305

[Close]

BLAST of CcUC06G122400 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 7.2e-10
Identity = 36/134 (26.87%), Postives = 68/134 (50.75%), Query Frame = 0


Query: 15  WTDEEDRILVECLVQCVQSGHWRADNGTFRPGFLSNILRMMQQRISGCSIQISPHLKSRV 74
           WT   D  L++ LV+ V +G+      TF     + ++     +    S      LK+R 
Sbjct: 327 WTPPMDYHLIDLLVEQVNNGN--RVGQTFITSAWNEMVTAFNAKFG--SQHNKDVLKNRY 386

Query: 75  RTLKRQYSAIAEMLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHLSAKRLRHKSFPYYDD 134
           + L+R Y+ I  +L    +GF W+A R  +  + +I++ ++++H  A+  R K+ P Y +
Sbjct: 387 KHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPN 446

Query: 135 LAIVFGKDRATGSH 149
           L  +FGK+ + G +
Sbjct: 447 LCFIFGKETSDGRY 454

The following BLAST results are available for this feature:

BLAST of CcUC06G122400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	2.1e-51	41.33	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0057083.1	3.9e-50	41.20	retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon p...	[more]
TYK26842.1	1.1e-49	46.98	uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]	[more]
TYK05082.1	1.9e-49	44.19	retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN34114.1	1.9e-49	40.66	retrotransposon protein [Cucumis melo subsp. melo]	[more]

BLAST of CcUC06G122400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G122400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	1.0e-51	41.33	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	1.0e-51	41.33	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5A7UME4	1.9e-50	41.20	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DTL0	5.5e-50	46.98	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C1M0	9.3e-50	44.19	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CcUC06G122400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	3.7e-14	27.85	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G30140.1	1.7e-11	29.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.1	6.5e-11	23.74	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	6.5e-11	23.74	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.2	7.2e-10	26.87	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 15..112 e-value: 1.9E-12 score: 48.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..216
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 8..291

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G122400.1	CcUC06G122400.1	mRNA