CcUC06G120860 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G120860
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationCicolChr06: 22813202 .. 22816334 (-)
RNA-Seq ExpressionCcUC06G120860
SyntenyCcUC06G120860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAATGTGGCCTCTCTTCCAACTTTGACTCAATCCCTTACCATCAAGTTGTCTAATACTAATTATCTACTATGGAAAAATCAATTACTCAATCTGATTATGGGATATGGTTTGGAGAGTTTCATCGATGGCACATCTCCACAACCACCAAAGTTTCTTGAACCACAACGTAGGTAAATCCTTATTTTTCTCTTTGGCAGAAGTACAATCACACACTTATAAGCTGGTTTTATGCTCTTTTAATGAAAATAAGTTGGGAGAAATTATGGGCTTTGGAATTGCGTTTGAAATCTGGGAAGCACGACGTACAGTATACGAGTCTTCTTCAATAGCTTGAATAATGTGTCTTCATTAACAACTTTAGAGAATAAAGAAGGAGGGTCTCACAATAGCTTAGTATTTGGCTCAAATTAAAGATGTGGCTAACAAATTTTCTGCAATTGGAGAACCCCTATCGTATCGAGATCATTTGGGTTACATCCTTGAATGGCTTGGAAATGAATATAATCCTTTTGTAACATCAATTCAAAATCGTACTATCGTTCTTCTATTGTAGATGTCAAGAGCTTACTTATTGCCTATGAAGCTCGACTAGAAAAGCAAACAGCTATGGATCAGTTGAATTTCATTCAAGCTAATCTTGCACATGTTTCGTTCGGACAGAACTCTTGTCGCGCTGCTTGGCCTTCGACTAGTAAATCTCCTACTCAATTCCCTATTCCTCAAACCAATTTTTCAAACCCAGGTATGCCCACTTCTTTTACTTCTTTTCCTCCATCTAGATCACCTCGACCTTCACTTGGAAGTCAAAATTGGCCTTCTCCCCAGCCTTCAAATCGACCACAATGTCAGATCTGTAACAAACTTGGGCATGCTGCCCTTACGTGTTATAACTTAGACAATCCAAAGTATCAAATCACCTCAAACAACCCTCCACCTCAGGCTCATCTTGTCCACACCTCCCCTGCTCAAGGCTTTTCCCCACAAATTGAGCCTCATTCTACTCCCAACACTATCCATCCTAATGAAAATTGTTAAATGGACACTGCCACCACCCATCATATGACCCCTGACCTCGCCAATGATATCTTAGATCTATGGTCTCCAAGACACCAAAACAATATGCACTTAATCTCTCCATAATCTCATCAAGAGGAGAGATCTTACTTAGAGTTTTGGTTGAGGAAGACAATAATCACCTTGTTGTTACCATTAATCTTGCAATCGAATCTGGTATGTTATTTATTCTTGGCAATTTGGCTTCAACAATAATCGTAAGATTTAGTCTATTCAATAGATTATAAGTTTTTATGCTAACAAGTGGTATCAAAGCATGAATTTCGTGTTAGCTTGTCAGGTTTTTTCTTGTTTACCATTGTTTTGATTCAATTTTCGGTAAAATAAAAAAAGAGGTTTTGAGTTTGTATAATAGATGTTTTTTGTTTTTGTTTTCTTTTTTTTTTTTTTGGCATCTTAGATTTACAGTTTAATGTTGATTCGATCATTGTTCAAGTCCATTGTTTTGGGCAAAATTGTTCGTAAATCAAGTCTTGTAAGTTTGTGTCATTTGTGGCAATTTTTTCATTGAAGAAGATTCAGAACAGAGGTGAAAAACGGAAGTTGAAGTGCAAACCCGAGAGGTTTTAGTGTAGGGTGCTCCTGTCGTCATATTTTGTGCATCATTAAAAGCTTCTAACCAGCTGACCGTTATTGTGTATGCGTCATGGATTCCCCTAGAATTGAATTCATTTTCCCTTGGTATAATTATTGCAAAAGTTGGTCGAAAATTGAAATTTTTGGGAACCCTAATTAAGGTTAAAGGAGTTTTATCGATGAATTCAGTAAATTGAAATTTGATTGATAATTTGGGTGATTTAAAACCCTTCTCTTTCTGCTTTTCCGTAGACTGATTCTTCCACTGGGCATCACACATTTCTCTGCATAAATAATCATTAAAAAATGCATGAGATAAAGGACAACCATTCGTTTTACATCTAGAAAAGATTAATTTTAGATTAATTTGTCATTTGGGCCTCAGAGTTTTAGCCCAATTAGCCCAACACAAGCTTTTGGTTTTGTCGATGGATCTACTCCAAAACCCATTGCATTCTTGAAAACGGCCTCAAGCTACAGTCGCTGCTAATGCTAGCTCTTCGTCCAGAACTGCATCGTCCTCAACTCTTCAACCCAATCCATTGTATGAATAATGGATTGCTAAAACATTATTTTCTTCGCCACACTATCTGCTCCTGTTATGACCTATGTTACGTTGTTGGCTGAAAACAGCAAAAGAAATGTGGGAGACTCTTGACTTCAACAATAATTGCTGTAAATCTGAAAATGGATCTTCAATATCGATCCATCAACAAGAACTCCCAAGTGAAACAATTGGTCAATATATCTACCACATCAAAGAAATCCATATGTTCTTGTTTATTACAAGTACTATAGCAAAGGTCCATACTAGGTCTTTGGCTAACCTCACTATTCTTTGAACTGAAACAAAGCGTCGAACATTATTTATGATGTGTGCAATATGTGTTGTCATTGTTCAAGATGATCAATTGACAAAATAATATGTAATGGTTGTATACTCAGTTCCATAATTCTTTTTTCGAGCAATACTTAGATACATTCTAAGATGCATCATTTTTTAGATGACCCATATCAAATCTAAAAATATTTTTAAAAAAAAGTAAAGAAGAGTTTTCACGTAAATTATGATTAGACAATTAAATAAGATGAACAAAGACATGTGTACTAGCATATGCATGTTAATTTTTTTCCGGTAATTGATTGTTCTATGAAACTTTGGTTCAATTTACCAATTCTTTTCTTTTTTCAATACATTAGTAGTGGAGGATTTGAATTACAATTCTCTTGGTCGCAAATATATTTTATATATCAATTGAGTTATGCTTGCTTTTGGCACCTATTCATTCATTCTTAATTTCTCGCCTATATTGATCCATTTGTACGAGACGGTTAATTGTATTGATTTCAACCTTTTTTTTAAAAAAATAATTTCGCTAATGTGGTCTAAGCAAACCCCATTTTCTTTTAAAAAAATATTCTTTTTCTTTCTAAAAGGTGTAATCTTACCATTAAACTAACATTTCAGAACAATACTTAA

mRNA sequence

TCAAATGTGGCCTCTCTTCCAACTTTGACTCAATCCCTTACCATCAAGTTGTCTAATACTAATTATCTACTATGGAAAAATCAATTACTCAATCTGATTATGGGATATGGTTTGGAGAGTTTCATCGATGGCACATCTCCACAACCACCAAAGTTTCTTGAACCACAACAAGTACAATCACACACTTATAAGCTGGTTTTATGCTCTTTTAATGAAAATAAGTTGGGAGAAATTATGGGCTTTGGAATTGCGTTTGAAATCTGGGAAGCACGACATGTGGCTAACAAATTTTCTGCAATTGGAGAACCCCTATCGTATCGAGATCATTTGGGTTACATCCTTGAATGGCTTGGAAATGAATATAATCCTTTTGTAACATCAATTCAAAATCATGTCAAGAGCTTACTTATTGCCTATGAAGCTCGACTAGAAAAGCAAACAGCTATGGATCAGTTGAATTTCATTCAAGCTAATCTTGCACATGTTTCGTTCGGACAGAACTCTTGTCGCGCTGCTTGGCCTTCGACTAGTAAATCTCCTACTCAATTCCCTATTCCTCAAACCAATTTTTCAAACCCAGGTATGCCCACTTCTTTTACTTCTTTTCCTCCATCTAGATCACCTCGACCTTCACTTGGAAGTCAAAATTGGCCTTCTCCCCAGCCTTCAAATCGACCACAATGTCAGATCTGTAACAAACTTGGGCATGCTGCCCTTACGTGTTATAACTTAGACAATCCAAAGTGTAATCTTACCATTAAACTAACATTTCAGAACAATACTTAA

Coding sequence (CDS)

TCAAATGTGGCCTCTCTTCCAACTTTGACTCAATCCCTTACCATCAAGTTGTCTAATACTAATTATCTACTATGGAAAAATCAATTACTCAATCTGATTATGGGATATGGTTTGGAGAGTTTCATCGATGGCACATCTCCACAACCACCAAAGTTTCTTGAACCACAACAAGTACAATCACACACTTATAAGCTGGTTTTATGCTCTTTTAATGAAAATAAGTTGGGAGAAATTATGGGCTTTGGAATTGCGTTTGAAATCTGGGAAGCACGACATGTGGCTAACAAATTTTCTGCAATTGGAGAACCCCTATCGTATCGAGATCATTTGGGTTACATCCTTGAATGGCTTGGAAATGAATATAATCCTTTTGTAACATCAATTCAAAATCATGTCAAGAGCTTACTTATTGCCTATGAAGCTCGACTAGAAAAGCAAACAGCTATGGATCAGTTGAATTTCATTCAAGCTAATCTTGCACATGTTTCGTTCGGACAGAACTCTTGTCGCGCTGCTTGGCCTTCGACTAGTAAATCTCCTACTCAATTCCCTATTCCTCAAACCAATTTTTCAAACCCAGGTATGCCCACTTCTTTTACTTCTTTTCCTCCATCTAGATCACCTCGACCTTCACTTGGAAGTCAAAATTGGCCTTCTCCCCAGCCTTCAAATCGACCACAATGTCAGATCTGTAACAAACTTGGGCATGCTGCCCTTACGTGTTATAACTTAGACAATCCAAAGTGTAATCTTACCATTAAACTAACATTTCAGAACAATACTTAA

Protein sequence

SNVASLPTLTQSLTIKLSNTNYLLWKNQLLNLIMGYGLESFIDGTSPQPPKFLEPQQVQSHTYKLVLCSFNENKLGEIMGFGIAFEIWEARHVANKFSAIGEPLSYRDHLGYILEWLGNEYNPFVTSIQNHVKSLLIAYEARLEKQTAMDQLNFIQANLAHVSFGQNSCRAAWPSTSKSPTQFPIPQTNFSNPGMPTSFTSFPPSRSPRPSLGSQNWPSPQPSNRPQCQICNKLGHAALTCYNLDNPKCNLTIKLTFQNNT
Homology
BLAST of CcUC06G120860 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 179.1 bits (453), Expect = 4.9e-41
Identity = 112/299 (37.46%), Postives = 156/299 (52.17%), Query Frame = 0

Query: 7   PTLTQSLTIKLSNTNYLLWKNQLLNLIMGYGLESFIDGTSPQPPKFLEPQQVQSHT---- 66
           PTL Q L +KL++ N+LLWKNQLLN ++  GL  ++DGT   PP+FL+  Q+Q +     
Sbjct: 24  PTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYA 83

Query: 67  ----YKLVLC----SFNENKLGEIMGFGIAFEIWEA------------------------ 126
                +L++C    S +E K+GE++      +IW +                        
Sbjct: 84  WERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSSLTRVYDSKTTARIMGLKTELQNLR 143

Query: 127 -------------RHVANKFSAIGEPLSYRDHLGYILEWLGNEYNPFVTSIQNH------ 186
                        + +A+KF+A+GEPLSYRDHL ++L+ LG+EYN FVTSI N       
Sbjct: 144 KDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGSEYNAFVTSIHNRADSPSL 203

Query: 187 --VKSLLIAYEARLEKQTAMDQLNFIQANLAHVSFGQNSCRAAWPSTSKSPTQFPIPQTN 246
             V+SLL+AYEARL+KQ  +DQLN  QANL ++S   NS         + P +F  P  N
Sbjct: 204 EDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLSLQHNS--------KRPPPKFSFP--N 263

BLAST of CcUC06G120860 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])

HSP 1 Score: 138.3 bits (347), Expect = 9.6e-29
Identity = 78/207 (37.68%), Postives = 115/207 (55.56%), Query Frame = 0

Query: 1   SNVASLPTLTQSLTIKLSNTNYLLWKNQLLNLIMGYGLESFIDGTSPQPPKFLEPQQVQS 60
           S + ++P++ Q L +KL + NY++WK QLLN+++  GLE F+DG+   PP+FL+PQQ QS
Sbjct: 39  SPLPNMPSINQPLAVKLDDHNYIIWKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQS 98

Query: 61  ----HTYK--------LVLCSFNENKLGEIMGFGIAFEIWEA------------------ 120
               H+++         +  S NE+ LG+I+G+  A +IWEA                  
Sbjct: 99  NPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSASQIWEALERLYAAASFAHLTELRT 158

Query: 121 -------------------RHVANKFSAIGEPLSYRDHLGYILEWLGNEYNPFVTSIQN- 151
                              RH+ N  ++IGEP++Y DHL Y L  LG +YNPFVTSIQ+ 
Sbjct: 159 ALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQ 218

BLAST of CcUC06G120860 vs. NCBI nr
Match: GFZ12741.1 (UBX domain-containing protein [Actinidia rufa])

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-28
Identity = 98/296 (33.11%), Postives = 143/296 (48.31%), Query Frame = 0

Query: 1   SNVASLPTLTQSLTIKLSNTNYLLWKNQLLNLIMGYGLESFIDGTSPQPPKFLEPQQVQS 60
           S + ++P++ Q L +KL + NY++WK QLLN+++  GLE F+DG+   PP+FL+PQQ QS
Sbjct: 39  SPLLNMPSINQPLAVKLDDHNYIIWKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQS 98

Query: 61  ----HTYK--------LVLCSFNENKLGEIMGFGIAFEIWEA------------------ 120
               H+++         +  S NE+ LG+I+G+  A +IWEA                  
Sbjct: 99  NPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSASQIWEALERLYAAASFAHLTELRT 158

Query: 121 -------------------RHVANKFSAIGEPLSYRDHLGYILEWLGNEYNPFVTSIQNH 180
                              RH+ N  ++IGEP++Y DHL Y L  LG +YNPFVTSIQ+ 
Sbjct: 159 ALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQ 218

Query: 181 VKSLLIAYEARLEKQTAMDQLNFIQANLAHVSFGQNSCRAAWPSTSKSPTQFPIPQTN-F 240
                 A    +E+ T+                         P++     +F  P TN F
Sbjct: 219 ------AIRPSVEEPTS-------------------------PTSLTRKPKFKNPSTNSF 278

Query: 241 SNPGMPTSFTSFPPSRSPRPSLGSQNWPSPQPSNRPQCQICNKLGHAALTCYNLDN 247
            N    ++  S P  ++  PS  S N  SP+P  RP+CQIC K GH A  CY+  N
Sbjct: 279 PN----SNSYSHPRGQNRNPSY-SPNPSSPKP--RPRCQICLKPGHTANKCYHHTN 296

BLAST of CcUC06G120860 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])

HSP 1 Score: 133.7 bits (335), Expect = 2.4e-27
Identity = 97/279 (34.77%), Postives = 136/279 (48.75%), Query Frame = 0

Query: 6   LPTLTQSLTIKLSNTNYLLWKNQLLNLIMGYGLESFIDGTSPQPPKFLEP-QQVQSHTY- 65
           LP++ Q  TIKL   NYL+WKNQLLN+I+  GLE FIDG+ P PP+F +P +Q+ +  Y 
Sbjct: 45  LPSMNQPFTIKLDADNYLIWKNQLLNVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYI 104

Query: 66  ----------KLVLCSFNENKLGEIMGFGIAFEIWEA----------------------- 125
                       +  S  +  +G+I+G+  AFEIWEA                       
Sbjct: 105 AWQRFNRLIMSWIYASLTQGVMGQIVGYASAFEIWEALNQIYTSSSLAKITELRAKLQNL 164

Query: 126 --------------RHVANKFSAIGEPLSYRDHLGYILEWLGNEYNPFVTSIQ------- 185
                         +++ N  +A+GEP+S +DHL Y+   L  EYN FVTSI        
Sbjct: 165 RKDGLTAIEYIQKHKNICNTLAAVGEPVSCKDHLLYLFGGLDREYNAFVTSITKRPDNLP 224

Query: 186 -NHVKSLLIAYEARLEKQTAMDQLNFIQANLAHVSFGQNSCRAAWPSTSKSPTQFPIPQT 227
              + SLL++YE RLE Q A  QL+ +QANLAH++  +   R   P+ S     F     
Sbjct: 225 LEEIYSLLLSYEFRLESQNASAQLSSLQANLAHLNINKKPYR---PNFSNPVGHF---TQ 284

BLAST of CcUC06G120860 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida])

HSP 1 Score: 125.6 bits (314), Expect = 6.5e-25
Identity = 79/165 (47.88%), Postives = 102/165 (61.82%), Query Frame = 0

Query: 89  EARHVANKFSAIGEPLSYRDHLGYILEWLGNEYNPFVTSIQNHVK--------SLLIAYE 148
           + + VA+KFS +GE +SYRDHL +IL+ LG+EYN FVTSIQNHV         SLL++YE
Sbjct: 23  QIKDVADKFSVVGESISYRDHLTHILDGLGSEYNAFVTSIQNHVDNLSVEDVWSLLLSYE 82

Query: 149 ARLEKQTAMDQLNFIQANLAHVSFGQNSCR-AAWPSTSKSPTQFPIPQTNFSNPGMPTSF 208
           A+LEKQ A+D LN  QA L+ +SF  NS R A  P  + S    P P  NFS P +P++ 
Sbjct: 83  AQLEKQNAIDHLNIAQAYLSKLSFQHNSKRNALRPFPNHSSLILPSP--NFS-PILPSTS 142

Query: 209 TSFPPSRSPRPSLGSQNWPSPQPSNRPQCQICNKLGHAALTCYNL 245
            S       RPS   +  PS  PS++PQCQI +K GH    C+ L
Sbjct: 143 NSV----HARPSFNKKWPPSKPPSSKPQCQIYHKFGHIVPQCHQL 180

BLAST of CcUC06G120860 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-09
Identity = 64/271 (23.62%), Postives = 113/271 (41.70%), Query Frame = 0

Query: 9   LTQSLTIKLSNTNYLLWKNQLLNLIMGYGLESFIDGTSPQPPKFLEPQQV---------- 68
           +  S   KL++TNYL+W  Q+  L  GY L  F+DG++P PP  +    V          
Sbjct: 18  VNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRW 77

Query: 69  ---QSHTYKLVLCSFNENKLGEIMGFGIAFEIWEA----------RHVA--------NKF 128
                  Y  +L + + +    +     A +IWE            HV         ++ 
Sbjct: 78  RRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRFITRFDQL 137

Query: 129 SAIGEPLSYRDHLGYILEWLGNEYNPFVTSI--QNHVKSLLIAYEARLEKQTAMDQLNFI 188
           + +G+P+ + + +  +LE L ++Y P +  I  ++   SL   +E  + +++ +  LN  
Sbjct: 138 ALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRESKLLALNSA 197

Query: 189 QA--NLAHVSFGQNSCRAAWPSTSKSPTQFPIPQTNFSNPGMPTSFTSFPPSRSPRPSLG 245
           +     A+V   +N+        ++   +      N SN   P+S  S   +R P+P LG
Sbjct: 198 EVVPITANVVTHRNT-NTNRNQNNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLG 257

BLAST of CcUC06G120860 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.7e-05
Identity = 63/303 (20.79%), Postives = 109/303 (35.97%), Query Frame = 0

Query: 2   NVASLPTLTQSLTIKLSNTNYLLWKNQLLNLIMGYGLESFIDGTSPQPPKFL----EPQQ 61
           N  S+  +  S   KL++TNYL+W  Q+  L  GY L  F+DG++  PP  +     P+ 
Sbjct: 11  NNTSILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRV 70

Query: 62  VQSHT---------YKLVLCSFNENKLGEIMGFGIAFEIWEA----------RHVA---- 121
              +T         Y  VL + + +    +     A +IWE            HV     
Sbjct: 71  NPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRT 130

Query: 122 -----------------------NKFSAIGEPLSYRDHLGYILEWLGNEYNPFVTSIQ-- 181
                                  ++ + +G+P+ + + +  +LE L  EY P +  I   
Sbjct: 131 QLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAK 190

Query: 182 ------NHVKSLLIAYEARLEKQTAMDQLNFIQANLAHVSFGQNSCRAAWPSTSKSPTQF 241
                   +   L+ +E+++    A+     I      VS    +      + +++    
Sbjct: 191 DTPPTLTEIHERLLNHESKI---LAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYD 250

Query: 242 PIPQTNFSNPGMPTSFTSFPPSRSPRPSLGSQNWPSPQPSNRPQCQICNKLGHAALTCYN 247
                N S P   +S    P +   +P LG             +CQIC   GH+A  C  
Sbjct: 251 NRNNNNNSKPWQQSSTNFHPNNNQSKPYLG-------------KCQICGVQGHSAKRCSQ 297

BLAST of CcUC06G120860 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-41
Identity = 112/299 (37.46%), Postives = 156/299 (52.17%), Query Frame = 0

Query: 7   PTLTQSLTIKLSNTNYLLWKNQLLNLIMGYGLESFIDGTSPQPPKFLEPQQVQSHT---- 66
           PTL Q L +KL++ N+LLWKNQLLN ++  GL  ++DGT   PP+FL+  Q+Q +     
Sbjct: 24  PTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYA 83

Query: 67  ----YKLVLC----SFNENKLGEIMGFGIAFEIWEA------------------------ 126
                +L++C    S +E K+GE++      +IW +                        
Sbjct: 84  WERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSSLTRVYDSKTTARIMGLKTELQNLR 143

Query: 127 -------------RHVANKFSAIGEPLSYRDHLGYILEWLGNEYNPFVTSIQNH------ 186
                        + +A+KF+A+GEPLSYRDHL ++L+ LG+EYN FVTSI N       
Sbjct: 144 KDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGSEYNAFVTSIHNRADSPSL 203

Query: 187 --VKSLLIAYEARLEKQTAMDQLNFIQANLAHVSFGQNSCRAAWPSTSKSPTQFPIPQTN 246
             V+SLL+AYEARL+KQ  +DQLN  QANL ++S   NS         + P +F  P  N
Sbjct: 204 EDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLSLQHNS--------KRPPPKFSFP--N 263

BLAST of CcUC06G120860 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.7e-29
Identity = 78/207 (37.68%), Postives = 115/207 (55.56%), Query Frame = 0

Query: 1   SNVASLPTLTQSLTIKLSNTNYLLWKNQLLNLIMGYGLESFIDGTSPQPPKFLEPQQVQS 60
           S + ++P++ Q L +KL + NY++WK QLLN+++  GLE F+DG+   PP+FL+PQQ QS
Sbjct: 39  SPLPNMPSINQPLAVKLDDHNYIIWKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQS 98

Query: 61  ----HTYK--------LVLCSFNENKLGEIMGFGIAFEIWEA------------------ 120
               H+++         +  S NE+ LG+I+G+  A +IWEA                  
Sbjct: 99  NPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSASQIWEALERLYAAASFAHLTELRT 158

Query: 121 -------------------RHVANKFSAIGEPLSYRDHLGYILEWLGNEYNPFVTSIQN- 151
                              RH+ N  ++IGEP++Y DHL Y L  LG +YNPFVTSIQ+ 
Sbjct: 159 ALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQ 218

BLAST of CcUC06G120860 vs. ExPASy TrEMBL
Match: A0A7J0GPN0 (UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-28
Identity = 98/296 (33.11%), Postives = 143/296 (48.31%), Query Frame = 0

Query: 1   SNVASLPTLTQSLTIKLSNTNYLLWKNQLLNLIMGYGLESFIDGTSPQPPKFLEPQQVQS 60
           S + ++P++ Q L +KL + NY++WK QLLN+++  GLE F+DG+   PP+FL+PQQ QS
Sbjct: 39  SPLLNMPSINQPLAVKLDDHNYIIWKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQS 98

Query: 61  ----HTYK--------LVLCSFNENKLGEIMGFGIAFEIWEA------------------ 120
               H+++         +  S NE+ LG+I+G+  A +IWEA                  
Sbjct: 99  NPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSASQIWEALERLYAAASFAHLTELRT 158

Query: 121 -------------------RHVANKFSAIGEPLSYRDHLGYILEWLGNEYNPFVTSIQNH 180
                              RH+ N  ++IGEP++Y DHL Y L  LG +YNPFVTSIQ+ 
Sbjct: 159 ALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQ 218

Query: 181 VKSLLIAYEARLEKQTAMDQLNFIQANLAHVSFGQNSCRAAWPSTSKSPTQFPIPQTN-F 240
                 A    +E+ T+                         P++     +F  P TN F
Sbjct: 219 ------AIRPSVEEPTS-------------------------PTSLTRKPKFKNPSTNSF 278

Query: 241 SNPGMPTSFTSFPPSRSPRPSLGSQNWPSPQPSNRPQCQICNKLGHAALTCYNLDN 247
            N    ++  S P  ++  PS  S N  SP+P  RP+CQIC K GH A  CY+  N
Sbjct: 279 PN----SNSYSHPRGQNRNPSY-SPNPSSPKP--RPRCQICLKPGHTANKCYHHTN 296

BLAST of CcUC06G120860 vs. ExPASy TrEMBL
Match: A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 97/279 (34.77%), Postives = 136/279 (48.75%), Query Frame = 0

Query: 6   LPTLTQSLTIKLSNTNYLLWKNQLLNLIMGYGLESFIDGTSPQPPKFLEP-QQVQSHTY- 65
           LP++ Q  TIKL   NYL+WKNQLLN+I+  GLE FIDG+ P PP+F +P +Q+ +  Y 
Sbjct: 45  LPSMNQPFTIKLDADNYLIWKNQLLNVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYI 104

Query: 66  ----------KLVLCSFNENKLGEIMGFGIAFEIWEA----------------------- 125
                       +  S  +  +G+I+G+  AFEIWEA                       
Sbjct: 105 AWQRFNRLIMSWIYASLTQGVMGQIVGYASAFEIWEALNQIYTSSSLAKITELRAKLQNL 164

Query: 126 --------------RHVANKFSAIGEPLSYRDHLGYILEWLGNEYNPFVTSIQ------- 185
                         +++ N  +A+GEP+S +DHL Y+   L  EYN FVTSI        
Sbjct: 165 RKDGLTAIEYIQKHKNICNTLAAVGEPVSCKDHLLYLFGGLDREYNAFVTSITKRPDNLP 224

Query: 186 -NHVKSLLIAYEARLEKQTAMDQLNFIQANLAHVSFGQNSCRAAWPSTSKSPTQFPIPQT 227
              + SLL++YE RLE Q A  QL+ +QANLAH++  +   R   P+ S     F     
Sbjct: 225 LEEIYSLLLSYEFRLESQNASAQLSSLQANLAHLNINKKPYR---PNFSNPVGHF---TQ 284

BLAST of CcUC06G120860 vs. ExPASy TrEMBL
Match: A0A438DGT2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3179 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.0e-23
Identity = 91/279 (32.62%), Postives = 142/279 (50.90%), Query Frame = 0

Query: 1   SNVASLPT---LTQSLTIKLSNTNYLLWKNQLLNLIMGYGLESFIDGTSPQPPKFLEPQQ 60
           S++AS+P+   L  SL +KL  TNY+LW++Q+ N+I   G E FIDGTS  P K L P +
Sbjct: 18  SSMASIPSYQMLNYSLPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSVCPEKELRPGE 77

Query: 61  V-------QSHTYKLVLCSFNENKLGEIMGFGIAFEIWEARHVANKFSAIGEPLSYRDHL 120
           +       +     ++  S + +  G +    +   I + +  A+  +AIGEP+S +D +
Sbjct: 78  INPAFVAWRRQDRTILSGSIHRSHQGSM---SMIDYIMKVKGAADSLAAIGEPVSEQDQI 137

Query: 121 GYILEWLGNEYNPFVTSIQ--------NHVKSLLIAYEARLEKQTAMDQLNFIQANLAHV 180
             +L  LG++YN  VT+I           V S+L+A+E RLE+Q +++QL  + AN A  
Sbjct: 138 MNLLGGLGSDYNAVVTAINIREDKISLEAVHSMLLAFEQRLEQQGSIEQLPAMSANYASS 197

Query: 181 SFGQNSCRAAWPSTSKSPTQFPIPQTNFSNPGMPTSFTSFPPSRSPRPSLGSQNWPSPQP 240
           S  +   R    +  + P  F +  +NF   G    +             G QN+ S   
Sbjct: 198 SSNRGGGRKY--NGGRRP-NFMMTNSNFRGRGRGGRY----------GQNGRQNFSS--- 257

Query: 241 SNRPQCQICNKLGHAALTCYNLDNPKCNLTIKLTFQNNT 262
           S RPQCQ+C K GH    CY+    + ++T + T QNNT
Sbjct: 258 SERPQCQLCGKFGHTVQVCYH----RFDITFQST-QNNT 272

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155181.14.9e-4137.46uncharacterized protein LOC111022315 [Momordica charantia][more]
GFY85402.19.6e-2937.68hypothetical protein Acr_04g0001400 [Actinidia rufa][more]
GFZ12741.12.8e-2833.11UBX domain-containing protein [Actinidia rufa][more]
PON47862.12.4e-2734.77hypothetical protein TorRG33x02_321990 [Trema orientale][more]
XP_038891713.16.5e-2547.88uncharacterized protein LOC120081111 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9ZT941.4e-0923.62Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW22.7e-0520.79Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A6J1DQX72.4e-4137.46uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A7J0EGI54.7e-2937.68Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1[more]
A0A7J0GPN01.4e-2833.11UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4... [more]
A0A2P5BGF81.1e-2734.77Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV... [more]
A0A438DGT25.0e-2332.62Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..224
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 92..244
coord: 9..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G120860.1CcUC06G120860.1mRNA