CcUC06G119760 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G119760
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description50S ribosomal protein L2, chloroplastic
LocationCicolChr06: 18891163 .. 18891591 (-)
RNA-Seq ExpressionCcUC06G119760
SyntenyCcUC06G119760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTCGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

mRNA sequence

ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTCGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

Coding sequence (CDS)

ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTCGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

Protein sequence

MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Homology
[Close]
BLAST of CcUC06G119760 vs. NCBI nr
Match: YP_010119775.1 (ribosomal protein L2 [Hemsleya zhejiangensis] >YP_010119798.1 ribosomal protein L2 [Hemsleya zhejiangensis] >QRC26944.1 ribosomal protein L2 [Hemsleya zhejiangensis] >QRC26945.1 ribosomal protein L2 [Hemsleya zhejiangensis])

HSP 1 Score: 281.2 bits (718), Expect = 5.0e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNLILRRRSK 275

[Close]
BLAST of CcUC06G119760 vs. NCBI nr
Match: WP_131792711.1 (50S ribosomal protein L2 [Candidatus Frankia datiscae])

HSP 1 Score: 281.2 bits (718), Expect = 5.0e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 35  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 94

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 95  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 154

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 155 LGRRSRKRNKYSDNLILRRRSK 176

[Close]
BLAST of CcUC06G119760 vs. NCBI nr
Match: QCY72905.1 (ribosomal protein L2 [Cucumis hystrix])

HSP 1 Score: 281.2 bits (718), Expect = 5.0e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNLILRRRSK 275

[Close]
BLAST of CcUC06G119760 vs. NCBI nr
Match: YP_009687060.1 (ribosomal protein L2 [Klainedoxa gabonensis] >YP_009687081.1 ribosomal protein L2 [Klainedoxa gabonensis] >QDW75806.1 ribosomal protein L2 [Klainedoxa gabonensis] >QDW75829.1 ribosomal protein L2 [Klainedoxa gabonensis])

HSP 1 Score: 281.2 bits (718), Expect = 5.0e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 136 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 195

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 196 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 255

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 256 LGRRSRKRNKYSDNLILRRRSK 277

[Close]
BLAST of CcUC06G119760 vs. NCBI nr
Match: YP_004841825.1 (ribosomal protein L2 [Cucumis melo subsp. melo] >YP_009317427.1 ribosomal protein L2 [Coccinia grandis] >YP_009317449.1 ribosomal protein L2 [Coccinia grandis] >YP_009346539.1 ribosomal protein L2 [Cucumis x hytivus] >YP_009525227.1 ribosomal protein L2 [Hodgsonia macrocarpa] >YP_009525248.1 ribosomal protein L2 [Hodgsonia macrocarpa] >YP_009751526.1 ribosomal protein L2 [Thladiantha dubia] >YP_009751548.1 ribosomal protein L2 [Thladiantha dubia] >YP_009751694.1 ribosomal protein L2 [Hodgsonia heteroclita] >YP_009751716.1 ribosomal protein L2 [Hodgsonia heteroclita] >YP_009751863.1 ribosomal protein L2 [Indofevillea khasiana] >YP_009751884.1 ribosomal protein L2 [Indofevillea khasiana] >YP_009751947.1 ribosomal protein L2 [Cyclanthera pedata] >YP_009751968.1 ribosomal protein L2 [Cyclanthera pedata] >YP_009752031.1 ribosomal protein L2 [Cionosicys macranthus] >YP_009752053.1 ribosomal protein L2 [Cionosicys macranthus] >YP_009752284.1 ribosomal protein L2 [Trichosanthes baviensis] >YP_009752305.1 ribosomal protein L2 [Trichosanthes baviensis] >YP_009752453.1 ribosomal protein L2 [Trichosanthes tricuspidata] >YP_009752474.1 ribosomal protein L2 [Trichosanthes tricuspidata] >YP_009752537.1 ribosomal protein L2 [Trichosanthes tubiflora] >YP_009752559.1 ribosomal protein L2 [Trichosanthes tubiflora] >YP_009752622.1 ribosomal protein L2 [Trichosanthes homophylla] >YP_009752644.1 ribosomal protein L2 [Trichosanthes homophylla] >YP_009752876.1 ribosomal protein L2 [Baijiania yunnanensis] >YP_009752898.1 ribosomal protein L2 [Baijiania yunnanensis] >YP_009752961.1 ribosomal protein L2 [Momordica sessilifolia] >YP_009752982.1 ribosomal protein L2 [Momordica sessilifolia] >YP_009753045.1 ribosomal protein L2 [Gerrardanthus macrorhizus] >YP_009753067.1 ribosomal protein L2 [Gerrardanthus macrorhizus] >YP_009753130.1 ribosomal protein L2 [Corallocarpus boehmii] >YP_009753152.1 ribosomal protein L2 [Corallocarpus boehmii] >YP_009753215.1 ribosomal protein L2 [Trichosanthes truncata] >YP_009753236.1 ribosomal protein L2 [Trichosanthes truncata] >YP_009753298.1 ribosomal protein L2 [Nothoalsomitra suberosa] >YP_009753320.1 ribosomal protein L2 [Nothoalsomitra suberosa] >YP_009753661.1 ribosomal protein L2 [Trichosanthes wallichiana] >YP_009753683.1 ribosomal protein L2 [Trichosanthes wallichiana] >YP_009753746.1 ribosomal protein L2 [Trichosanthes nervifolia] >YP_009753767.1 ribosomal protein L2 [Trichosanthes nervifolia] >YP_009753830.1 ribosomal protein L2 [Trichosanthes pilosa] >YP_009753852.1 ribosomal protein L2 [Trichosanthes pilosa] >YP_009753915.1 ribosomal protein L2 [Trichosanthes lobata] >YP_009753937.1 ribosomal protein L2 [Trichosanthes lobata] >YP_009860115.1 ribosomal protein L2 [Cucumis melo subsp. agrestis] >YP_009860139.1 ribosomal protein L2 [Cucumis melo subsp. agrestis] >YP_010131135.1 ribosomal protein L2 [Benincasa hispida] >YP_010131156.1 ribosomal protein L2 [Benincasa hispida] >YP_247641.1 ribosomal protein L2 [Cucumis sativus] >YP_247663.1 ribosomal protein L2 [Cucumis sativus] >Q4VZK5.1 RecName: Full=50S ribosomal protein L2, chloroplastic [Cucumis sativus] >ALF03343.1 ribosomal protein L2 [Cucumis sativus var. hardwickii] >AXU40582.1 ribosomal protein L2 [Gomphogyne cissiformis var. cissiformis] >QIT04091.1 ribosomal protein L2 [Luffa aegyptiaca] >QIT04174.1 ribosomal protein L2 [Sechium edule] >QIT05103.1 ribosomal protein L2 [Trichosanthes kirilowii] >QKX48516.1 ribosomal protein L2 [Luffa acutangula] >QZL38635.1 ribosomal protein L2 [Citrullus naudinianus] >QZL38723.1 ribosomal protein L2 [Citrullus ecirrhosus])

HSP 1 Score: 281.2 bits (718), Expect = 5.0e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]
BLAST of CcUC06G119760 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 6.6e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]
BLAST of CcUC06G119760 vs. ExPASy Swiss-Prot
Match: Q14F95 (50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-74
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNLILRRRSK 275

[Close]
BLAST of CcUC06G119760 vs. ExPASy Swiss-Prot
Match: Q14FB6 (50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-74
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]
BLAST of CcUC06G119760 vs. ExPASy Swiss-Prot
Match: A4GYV2 (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-74
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]
BLAST of CcUC06G119760 vs. ExPASy Swiss-Prot
Match: B1A976 (50S ribosomal protein L2, chloroplastic OS=Carica papaya OX=3649 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.9e-74
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]
BLAST of CcUC06G119760 vs. ExPASy TrEMBL
Match: A0A218KG93 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]
BLAST of CcUC06G119760 vs. ExPASy TrEMBL
Match: A0A7G8QE64 (Ribosomal protein L2 OS=Balanops balansae OX=544656 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]
BLAST of CcUC06G119760 vs. ExPASy TrEMBL
Match: A0A5B8GX79 (Ribosomal protein L2 OS=Klainedoxa gabonensis OX=289639 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 136 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 195

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 196 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 255

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 256 LGRRSRKRNKYSDNLILRRRSK 277

[Close]
BLAST of CcUC06G119760 vs. ExPASy TrEMBL
Match: A0A218KG69 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]
BLAST of CcUC06G119760 vs. ExPASy TrEMBL
Match: A0A6H0ET23 (50S ribosomal protein L2, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]
BLAST of CcUC06G119760 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 269.6 bits (688), Expect = 1.4e-72
Identity = 135/142 (95.07%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRR+RKR KYS+ LILRRRSK
Sbjct: 253 LGRRTRKRKKYSETLILRRRSK 274

[Close]
BLAST of CcUC06G119760 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 269.6 bits (688), Expect = 1.4e-72
Identity = 135/142 (95.07%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRR+RKR KYS+ LILRRRSK
Sbjct: 253 LGRRTRKRKKYSETLILRRRSK 274

[Close]
BLAST of CcUC06G119760 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 115.2 bits (287), Expect = 4.4e-26
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 60
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT---PW 120
            V N     K L +AG   WLG RP VRGV MNP DHPHGGGEG++     +  T   PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 121 GYPALG 123
           G P  G
Sbjct: 188 GKPCKG 193

[Close]
BLAST of CcUC06G119760 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 115.2 bits (287), Expect = 4.4e-26
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 60
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT---PW 120
            V N     K L +AG   WLG RP VRGV MNP DHPHGGGEG++     +  T   PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 121 GYPALG 123
           G P  G
Sbjct: 188 GKPCKG 193

[Close]
BLAST of CcUC06G119760 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 82.0 bits (201), Expect = 4.2e-16
Identity = 59/145 (40.69%), Postives = 76/145 (52.41%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 60
           +P G  I N+E+ +G  G LARA+G  A +IA   +S T  +KLPSG  +++   C A +
Sbjct: 108 IPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMI 167

Query: 61  GQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE----GRA 120
           GQV   G  +K L +AG+          CW    PVVRGV MNPV+HPHGGG     G A
Sbjct: 168 GQVAGGGRTEKPLLKAGNAYHKYKAKRNCW----PVVRGVAMNPVEHPHGGGNHQHIGHA 227

Query: 121 PIGR--KKPATPWGYPALGRRSRKR 129
              R  K      G  A  R  R+R
Sbjct: 228 STVRRDKSAGAKVGQIAARRTGRRR 248

The following BLAST results are available for this feature:
BLAST of CcUC06G119760 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_010119775.15.0e-72100.00ribosomal protein L2 [Hemsleya zhejiangensis] >YP_010119798.1 ribosomal protein ... [more]
WP_131792711.15.0e-72100.0050S ribosomal protein L2 [Candidatus Frankia datiscae][more]
QCY72905.15.0e-72100.00ribosomal protein L2 [Cucumis hystrix][more]
YP_009687060.15.0e-72100.00ribosomal protein L2 [Klainedoxa gabonensis] >YP_009687081.1 ribosomal protein L... [more]
YP_004841825.15.0e-72100.00ribosomal protein L2 [Cucumis melo subsp. melo] >YP_009317427.1 ribosomal protei... [more]
BLAST of CcUC06G119760 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZK56.6e-75100.0050S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=... [more]
Q14F951.5e-7499.3050S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=... [more]
Q14FB61.5e-7499.3050S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=... [more]
A4GYV21.5e-7499.3050S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A... [more]
B1A9761.9e-7499.3050S ribosomal protein L2, chloroplastic OS=Carica papaya OX=3649 GN=rpl2-A PE=3 ... [more]
BLAST of CcUC06G119760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A218KG932.4e-72100.0050S ribosomal protein L2, chloroplastic OS=Cucumis sativus var. hardwickii OX=31... [more]
A0A7G8QE642.4e-72100.00Ribosomal protein L2 OS=Balanops balansae OX=544656 GN=rpl2 PE=3 SV=1[more]
A0A5B8GX792.4e-72100.00Ribosomal protein L2 OS=Klainedoxa gabonensis OX=289639 GN=rpl2 PE=3 SV=1[more]
A0A218KG692.4e-72100.0050S ribosomal protein L2, chloroplastic OS=Cucumis sativus var. hardwickii OX=31... [more]
A0A6H0ET232.4e-72100.0050S ribosomal protein L2, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rp... [more]
BLAST of CcUC06G119760 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00830.11.4e-7295.07ribosomal protein L2 [more]
ATCG01310.11.4e-7295.07ribosomal protein L2 [more]
AT2G44065.14.4e-2648.41Ribosomal protein L2 family [more]
AT2G44065.24.4e-2648.41Ribosomal protein L2 family [more]
AT3G51190.14.2e-1640.69Ribosomal protein L2 family [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 1..119
e-value: 6.6E-66
score: 234.9
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 1..117
e-value: 4.5E-49
score: 165.8
IPR005880Ribosomal protein L2, bacterial/organellar-typeTIGRFAMTIGR01171TIGR01171coord: 1..141
e-value: 8.1E-64
score: 213.6
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..62
e-value: 4.0E-30
score: 105.6
IPR014726Ribosomal protein L2, domain 3GENE3D4.10.950.10Ribosomal protein L2, domain 3coord: 63..141
e-value: 4.8E-35
score: 121.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..142
NoneNo IPR availablePANTHERPTHR13691:SF539S RIBOSOMAL PROTEIN L2, MITOCHONDRIALcoord: 1..139
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 1..139
IPR022671Ribosomal protein L2, conserved sitePROSITEPS00467RIBOSOMAL_L2coord: 84..95
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G119760.1CcUC06G119760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity
molecular_function GO:0003723 RNA binding