CcUC06G119560 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G119560
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RNA-binding protein 42-like
Location	CicolChr06: 16475125 .. 16478457 (+)
RNA-Seq Expression	CcUC06G119560
Synteny	CcUC06G119560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTGACCGATCTTTCTAGAACTCTGAATCCCTCTCTTTCCCCTTCACATTTTTTTGACAAACAACCTATCCATCTTCTTGAGATCAACATCGAAATCCTTCGCTCAAGTCTGAATTCTCCGAATCTCAAATCCCCATTTCAGCGTTCCTCTTTTGTTGCAATTTGTTATCTATACCTTCGTCCATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATTTCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACCATCGGCCCCTGTTTCCGCCGCTGCTCCAACCACGGCCCCTGTGGCTGCTCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGTTGGTGTTAAACAGGTTTCTAATCCATCTATTTGGAATTTCACTTATTTGCTTCACTTTATATATATATTTGATCTCTCAAGTTGAAGAAGATTGTGCATATTTATTTCCAATATTTTGAATTGTTTCTAATGCTTTTCTTCTTTAGTTACTGTGCCGCAAAATAACATTTGGTTTTCCATTGTTTGTTTTTGAAAATTAAGCTATACTTCCGCCATAAGTTTATCCATTTTCTACCATGTTCTCATGAACCAAGCTAAGATTTGAAAATTAAGAAAACTAAAATCCCATTTAGTAACATTCGATTTTTCTTTCTTTTTTCTAAGTTTTTAAAAATTACGCTTATCAACCCCTCTTCCACCCCAAATCTCTAAAAATAAGCCAAATTTTGGAAATTAAGAAAAAAAGAAAAAAGTAAGCACTTAATATTATCTTTTTTAGAATTTGATGGGAGAATGTAACTATGGTATTTGAGTAAGATGCAAATTATCTAAAAAAGTTAGGTGGAATATGCCTAATTTTAAAAAATTAAAAACTGAAAACAAAATAGTTATCCAATGGAGTATAGGAATTCAAGTCTTCCTTCAAACAAGATGAAAATCGTAGTTGGGATATTTGGAGTAATCATGCATAATTCTTAATTTAAAAAAAAAACATAATAAAGTAAAATAAAAATGGAATCCTTATCAAACAAGGCCGATGTAATGTAAATTTTTTTGGAAAAAGAAAACCAAGACAAAAGAACTTGCTAAAAAGGACAAATGAGAGCATCTCAGACGAGAAAACTTGATAAGAAGATCCGCCAAAAAGCTCTGAAAACGATCACCAATAAGAAGCTTTGAAAAGTGCATAGCAAGTTCGCCCTTGAACCAAAAACAAAGCAAAATCACTTTCAAATGTAAATATTGTCATATTGTATCATTGAACGCCATGGATTCAGGAATCGAAAGGTTTGAGTCCTTAAGGGGTGGATTCATTGATCAGGATCCTAGTCAAAGTTAATCATTCTTATTGGTTCAAAATCACTTTGAAAATATGATCTCCTTCATTCAAAATCAGTTTACATAGTAAAAGAATTGGGCTTGAAAGTGTAAAAATCAAACTTGAAATAGATTTTGAATAATTAAAAGCATGTTTTAGGTTGGTTGTAAATACATTACAAGATCACTCCTAAATATGTTTATGGTAACAGTAGCTAGATTTCTTGTTTTTGGAGAATTCGTGCACTAATTTTATTAGGGTAATTGGTGAATTTAGGCGCAGCAGTTGTTTCAAAAAGACGCCCAAATAATCACAGCTGAAGCACTTGAGAGTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCCCGTAAAGCTGCTGGGCAGAAATGGGAGGATCTTACACTTGCTGATTGGCCTGAAAGTATGCTACCTTTTCGTTTCTTGCCCCTAATTTGTCTTATGTTATTTGGACTTATCTTTTATAGGAACCAAATATTGAGGTTGGAATTATAGCAACTACCATTTCAGAAATGGAGGACATCATGAGTATTGGGTAATTATGGTTAAACTACCAATTCTTATCCTCATATGTGGTAATCTTGACAAGTTTGCACATTCTTTGCATCTGGATTATGCAGATGATTACCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCGAGCATTTTCACGATTTCCATCCTTTAACATGGCTAGGGTGAGTTTCTACTTCATTCTTCTGGAACTCTATTCAGGCCTCATATTTTTTAACACAATCCATTTGTATGGTGTAAACTTTATTTCTTGTTCAGATTTTGATTTGAAGCCCAAAGAGCAGTTAAACATGAAAGGTTGGTTCTAGTCCCACCTAATTTGCGTTTGATTTAATGTTCAGTTATATATAAGTTTTGGGACACACACACAAGTCGAGATCATATACGTTTTGGATTCGGAACTTTTTGTTTTATCTTCCCGTCATATACTTTGGACTGAATCTTTTGCAATGATAAACCAACACATTTGCTCCTGATTGGAACCCCTTTTGTAGGTCATTTTCTTTTCTTTGTATACGTGGTATTTTTACATTTTTTTCCTCAAAACAACACACTTGCTCATTATAATTTTTGCATATATGATTGGCTGTGAGTGATAAGAATGTAGATGTAATTATGGTCGTGGATGTGAATGCAAAATGTGTAGGTTGTGAGAGATAAACGAACCGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCACTGCAGCACTCAAAGAAATGAATGGTAATGCTTTAGTTTTTATAACAGCATTCGATGATAGAATGAAGCCAACATGGATGATGCTTGAAAATGTTGTGCTTTCAGGTAAATACGTTGGGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAGGTATTCATGTTTGGAATTGGATTGCACTAATTTTTTTATTGTAACTGTACTCTTTCCGAAATTCATTTATTAGCATTCCTCCCTACAATTTTCTCTCATAGGGTGTTATTCAACTGGATTATTATTGTTATTGGATAGCACATGCTTAAATCATTATGGTGATTGGTTGTCATGTGGATTGCAGAATAAAACTCAAAAGAATTGGAAGGTAGAAAAGAGAAGTGTGGTGCATAAGTGAAAGGAGCATTGATGAAAATTCTCACGTATTGTTTTTGCCATTCCCTTCATGCTTTTCTTTTGTAAATTATAAGGGCCTCTTTGTTTCTTACCTGTTTGTTTCCTGAAGTTTTAGATATATTTAATATCTTACACAATTTTAACTTCTGTCTGGGAAAATTTTGAAAATAAGGGATTTTTGAAGTTAGAGTTAGCGTTCATTGTTTTTTCAAATATGTGGTTTGTAATAG

mRNA sequence

AACTGACCGATCTTTCTAGAACTCTGAATCCCTCTCTTTCCCCTTCACATTTTTTTGACAAACAACCTATCCATCTTCTTGAGATCAACATCGAAATCCTTCGCTCAAGTCTGAATTCTCCGAATCTCAAATCCCCATTTCAGCGTTCCTCTTTTGTTGCAATTTGTTATCTATACCTTCGTCCATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATTTCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACCATCGGCCCCTGTTTCCGCCGCTGCTCCAACCACGGCCCCTGTGGCTGCTCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGTTGGTGTTAAACAGGCGCAGCAGTTGTTTCAAAAAGACGCCCAAATAATCACAGCTGAAGCACTTGAGAGTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCCCGTAAAGCTGCTGGGCAGAAATGGGAGGATCTTACACTTGCTGATTGGCCTGAAAATGATTACCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCGAGCATTTTCACGATTTCCATCCTTTAACATGGCTAGGGTTGTGAGAGATAAACGAACCGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCACTGCAGCACTCAAAGAAATGAATGGTAAATACGTTGGGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAGAATAAAACTCAAAAGAATTGGAAGGTAGAAAAGAGAAGTGTGGTGCATAAGTGAAAGGAGCATTGATGAAAATTCTCACGTATTGTTTTTGCCATTCCCTTCATGCTTTTCTTTTGTAAATTATAAGGGCCTCTTTGTTTCTTACCTGTTTGTTTCCTGAAGTTTTAGATATATTTAATATCTTACACAATTTTAACTTCTGTCTGGGAAAATTTTGAAAATAAGGGATTTTTGAAGTTAGAGTTAGCGTTCATTGTTTTTTCAAATATGTGGTTTGTAATAG

Coding sequence (CDS)

ATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATTTCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACCATCGGCCCCTGTTTCCGCCGCTGCTCCAACCACGGCCCCTGTGGCTGCTCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGTTGGTGTTAAACAGGCGCAGCAGTTGTTTCAAAAAGACGCCCAAATAATCACAGCTGAAGCACTTGAGAGTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCCCGTAAAGCTGCTGGGCAGAAATGGGAGGATCTTACACTTGCTGATTGGCCTGAAAATGATTACCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCGAGCATTTTCACGATTTCCATCCTTTAACATGGCTAGGGTTGTGAGAGATAAACGAACCGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCACTGCAGCACTCAAAGAAATGAATGGTAAATACGTTGGGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAGAATAAAACTCAAAAGAATTGGAAGGTAGAAAAGAGAAGTGTGGTGCATAAGTGA

Protein sequence

MAAPCFWAPSSISSSQFAYSAGPCFPVPFHLQPSAPVSAAAPTTAPVAAPAAAIYPLPQYHQVGVKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRKAAGQKWEDLTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK

Homology

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BLAST of CcUC06G119560 vs. NCBI nr
Match: XP_038877084.1 (RNA-binding protein 42-like [Benincasa hispida])

HSP 1 Score: 419.5 bits (1077), Expect = 2.0e-113
Identity = 213/236 (90.25%), Postives = 222/236 (94.07%), Query Frame = 0


Query: 1   MAAPCFWAPSSISSSQFAYSAGPCFPVPFHLQPSAPVSAAAPTTAPVAAPAAAIYPLPQY 60
           MAAPCFWAPS+ISSSQFAYS GPCFPVPFHLQ SAP+ AAAPTTAPV APAAA YPLPQY
Sbjct: 1   MAAPCFWAPSAISSSQFAYSVGPCFPVPFHLQQSAPLYAAAPTTAPVVAPAAATYPLPQY 60

Query: 61  HQVGVKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRKAAGQKWEDLT 120
                +QAQQLFQKDAQIIT EALESVKVALARDEMEHKA+TKRKAIPRKAAGQKWED T
Sbjct: 61  -----QQAQQLFQKDAQIITPEALESVKVALARDEMEHKAETKRKAIPRKAAGQKWEDPT 120

Query: 121 LADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNP 180
           LADWPENDYRLFCGDLGNEVNDDVLSRAFS+FPSFNMARVVRDKRTGKTKGYGFVSFTNP
Sbjct: 121 LADWPENDYRLFCGDLGNEVNDDVLSRAFSQFPSFNMARVVRDKRTGKTKGYGFVSFTNP 180

Query: 181 LDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVH 237
           LDLTAALKE NGKYVGNRPIKLRKSKWKDRIDYEAL +LKNKTQKNWKV+K+SV+H
Sbjct: 181 LDLTAALKERNGKYVGNRPIKLRKSKWKDRIDYEALAKLKNKTQKNWKVQKKSVLH 231

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BLAST of CcUC06G119560 vs. NCBI nr
Match: KAG6598941.1 (RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 325.9 bits (834), Expect = 3.0e-85
Identity = 175/247 (70.85%), Postives = 191/247 (77.33%), Query Frame = 0


Query: 8   APSSISSSQFAYSAGPCFPVPFHLQPSAPVSAA-----------------APTTAPVAAP 67
           APSS S SQF YS G  FP+PFHLQ SAP  A                   P T+   AP
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAP 69

Query: 68  AAAIYPLPQYHQVGVKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRK 127
           A A Y LPQY     +QAQQLFQ+DAQ IT EALESVK ALA  E+EHKA+TK+KAIPRK
Sbjct: 70  APAAYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK 129

Query: 128 AAGQKWEDLTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTK 187
           AAGQ WED TLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTK
Sbjct: 130 AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTK 189

Query: 188 GYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVE 238
           GYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ 
Sbjct: 190 GYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLP 249

[Close]

BLAST of CcUC06G119560 vs. NCBI nr
Match: XP_023545858.1 (RNA-binding protein 42-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.9 bits (834), Expect = 3.0e-85
Identity = 175/247 (70.85%), Postives = 191/247 (77.33%), Query Frame = 0


Query: 8   APSSISSSQFAYSAGPCFPVPFHLQPSAPVSAA-----------------APTTAPVAAP 67
           APSS S SQF YS G  FP+PFHLQ SAP  A                   P T+   AP
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAP 69

Query: 68  AAAIYPLPQYHQVGVKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRK 127
           A A Y LPQY     +QAQQLFQ+DAQ IT EALESVK ALA  E+EHKA+TK+KAIPRK
Sbjct: 70  APAAYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK 129

Query: 128 AAGQKWEDLTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTK 187
           AAGQ WED TLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTK
Sbjct: 130 AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTK 189

Query: 188 GYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVE 238
           GYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ 
Sbjct: 190 GYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLP 249

[Close]

BLAST of CcUC06G119560 vs. NCBI nr
Match: XP_022929768.1 (RNA-binding protein 42-like [Cucurbita moschata])

HSP 1 Score: 325.9 bits (834), Expect = 3.0e-85
Identity = 175/247 (70.85%), Postives = 191/247 (77.33%), Query Frame = 0


Query: 8   APSSISSSQFAYSAGPCFPVPFHLQPSAPVSAA-----------------APTTAPVAAP 67
           APSS S SQF YS G  FP+PFHLQ SAP  A                   P T+   AP
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAP 69

Query: 68  AAAIYPLPQYHQVGVKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRK 127
           A A Y LPQY     +QAQQLFQ+DAQ IT EALESVK ALA  E+EHKA+TK+KAIPRK
Sbjct: 70  APAAYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK 129

Query: 128 AAGQKWEDLTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTK 187
           AAGQ WED TLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTK
Sbjct: 130 AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTK 189

Query: 188 GYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVE 238
           GYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ 
Sbjct: 190 GYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLP 249

[Close]

BLAST of CcUC06G119560 vs. NCBI nr
Match: KAG7029895.1 (RNA-binding protein 42 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 324.7 bits (831), Expect = 6.6e-85
Identity = 174/247 (70.45%), Postives = 191/247 (77.33%), Query Frame = 0


Query: 8   APSSISSSQFAYSAGPCFPVPFHLQPSAPVSAA-----------------APTTAPVAAP 67
           APSS S SQF YS G  FP+PFHLQ +AP  A                   P T+   AP
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQTAPAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAP 69

Query: 68  AAAIYPLPQYHQVGVKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRK 127
           A A Y LPQY     +QAQQLFQ+DAQ IT EALESVK ALA  E+EHKA+TK+KAIPRK
Sbjct: 70  APAAYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK 129

Query: 128 AAGQKWEDLTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTK 187
           AAGQ WED TLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTK
Sbjct: 130 AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTK 189

Query: 188 GYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVE 238
           GYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ 
Sbjct: 190 GYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLP 249

[Close]

BLAST of CcUC06G119560 vs. ExPASy Swiss-Prot
Match: Q66KL9 (RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-38
Identity = 96/199 (48.24%), Postives = 124/199 (62.31%), Query Frame = 0


Query: 22  GPCFPVPFHLQPSAP-----VSAAAP---TTAPVAAPAAAIY--PLPQYHQVGVKQAQQL 81
           GP  P P  + PSAP     V  AAP   T  PV  P   I   P+    +  +   + +
Sbjct: 177 GPLPPPPRPVVPSAPKMNPTVIQAAPTVYTAPPVRKPEEEIVEPPILPDEKETLSFEEAV 236

Query: 82  FQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRKAAGQKWEDLTLADWPENDYRL 141
                  +     E V   +  D+ + K +  ++ I R AAG  WED +L +W  +D+R+
Sbjct: 237 IGPSMPEMEPVQPEVVLEPVQEDKKKTKPEKLKRCI-RTAAGTSWEDQSLLEWESDDFRI 296

Query: 142 FCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMN 201
           FCGDLGNEVNDD+L+RAFSR+PSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMN
Sbjct: 297 FCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMN 356

Query: 202 GKYVGNRPIKLRKSKWKDR 211
           GKYVG+RPIKLRKS+WKDR
Sbjct: 357 GKYVGSRPIKLRKSQWKDR 374

[Close]

BLAST of CcUC06G119560 vs. ExPASy Swiss-Prot
Match: Q0P5L0 (RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.7e-38
Identity = 94/206 (45.63%), Postives = 126/206 (61.17%), Query Frame = 0


Query: 13  SSSQFAYSAGPCFPVPFHLQPSAPVSAAAPTTAPVAAP-----AAAIYP---LPQYHQVG 72
           +S+  A  AG     P  + PS P++ A P   P   P        + P   +P+   + 
Sbjct: 230 ASAVVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLR 289

Query: 73  VKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRKAAGQKWEDLTLADW 132
            +      +    ++  E  E     L+ D+ + K +  ++ I R AAG  WED +L +W
Sbjct: 290 PRPRPPRPEPPPGLMALEVPE----PLSEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEW 349

Query: 133 PENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLT 192
             +D+R+FCGDLGNEVNDD+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D  
Sbjct: 350 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 409

Query: 193 AALKEMNGKYVGNRPIKLRKSKWKDR 211
            A++EMNGKYVG+RPIKLRKS WKDR
Sbjct: 410 RAMREMNGKYVGSRPIKLRKSMWKDR 430

[Close]

BLAST of CcUC06G119560 vs. ExPASy Swiss-Prot
Match: Q9BTD8 (RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.7e-38
Identity = 94/206 (45.63%), Postives = 125/206 (60.68%), Query Frame = 0


Query: 13  SSSQFAYSAGPCFPVPFHLQPSAPVSAAAPTTAPVAAP-----AAAIYP---LPQYHQVG 72
           +S+  A  AG     P  + PS P++ A P   P   P        + P   +P+   + 
Sbjct: 262 ASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLR 321

Query: 73  VKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRKAAGQKWEDLTLADW 132
            +      +    ++  E  E     L  D+ + K +  ++ I R AAG  WED +L +W
Sbjct: 322 PRPRPPRPEPPPGLMALEVPE----PLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEW 381

Query: 133 PENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLT 192
             +D+R+FCGDLGNEVNDD+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D  
Sbjct: 382 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 441

Query: 193 AALKEMNGKYVGNRPIKLRKSKWKDR 211
            A++EMNGKYVG+RPIKLRKS WKDR
Sbjct: 442 RAMREMNGKYVGSRPIKLRKSMWKDR 462

[Close]

BLAST of CcUC06G119560 vs. ExPASy Swiss-Prot
Match: Q91V81 (RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 3.7e-38
Identity = 94/206 (45.63%), Postives = 125/206 (60.68%), Query Frame = 0


Query: 13  SSSQFAYSAGPCFPVPFHLQPSAPVSAAAPTTAPVAAP-----AAAIYP---LPQYHQVG 72
           +S+  A  AG     P  + PS P++ A P   P   P        + P   +P+   + 
Sbjct: 260 ASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLR 319

Query: 73  VKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRKAAGQKWEDLTLADW 132
            +      +    ++  E  E     L  D+ + K +  ++ I R AAG  WED +L +W
Sbjct: 320 PRPRPPRPEPPPGLMALEVPE----PLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEW 379

Query: 133 PENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLT 192
             +D+R+FCGDLGNEVNDD+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D  
Sbjct: 380 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 439

Query: 193 AALKEMNGKYVGNRPIKLRKSKWKDR 211
            A++EMNGKYVG+RPIKLRKS WKDR
Sbjct: 440 RAMREMNGKYVGSRPIKLRKSMWKDR 460

[Close]

BLAST of CcUC06G119560 vs. ExPASy Swiss-Prot
Match: Q6AXT7 (RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 3.7e-38
Identity = 94/206 (45.63%), Postives = 125/206 (60.68%), Query Frame = 0


Query: 13  SSSQFAYSAGPCFPVPFHLQPSAPVSAAAPTTAPVAAP-----AAAIYP---LPQYHQVG 72
           +S+  A  AG     P  + PS P++ A P   P   P        + P   +P+   + 
Sbjct: 260 ASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLR 319

Query: 73  VKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRKAAGQKWEDLTLADW 132
            +      +    ++  E  E     L  D+ + K +  ++ I R AAG  WED +L +W
Sbjct: 320 PRPRPPRPEPPPGLMALEVPE----PLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEW 379

Query: 133 PENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLT 192
             +D+R+FCGDLGNEVNDD+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D  
Sbjct: 380 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 439

Query: 193 AALKEMNGKYVGNRPIKLRKSKWKDR 211
            A++EMNGKYVG+RPIKLRKS WKDR
Sbjct: 440 RAMREMNGKYVGSRPIKLRKSMWKDR 460

[Close]

BLAST of CcUC06G119560 vs. ExPASy TrEMBL
Match: A0A6J1ET57 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.4e-85
Identity = 175/247 (70.85%), Postives = 191/247 (77.33%), Query Frame = 0


Query: 8   APSSISSSQFAYSAGPCFPVPFHLQPSAPVSAA-----------------APTTAPVAAP 67
           APSS S SQF YS G  FP+PFHLQ SAP  A                   P T+   AP
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAP 69

Query: 68  AAAIYPLPQYHQVGVKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRK 127
           A A Y LPQY     +QAQQLFQ+DAQ IT EALESVK ALA  E+EHKA+TK+KAIPRK
Sbjct: 70  APAAYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK 129

Query: 128 AAGQKWEDLTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTK 187
           AAGQ WED TLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTK
Sbjct: 130 AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTK 189

Query: 188 GYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVE 238
           GYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ 
Sbjct: 190 GYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLP 249

[Close]

BLAST of CcUC06G119560 vs. ExPASy TrEMBL
Match: A0A6J1KCL6 (RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111492062 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 5.4e-85
Identity = 174/247 (70.45%), Postives = 191/247 (77.33%), Query Frame = 0


Query: 8   APSSISSSQFAYSAGPCFPVPFHLQPSA-----------------PVSAAAPTTAPVAAP 67
           APSS S SQF YS G  FP+PFHLQ SA                 P +   P T+   AP
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSATAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAP 69

Query: 68  AAAIYPLPQYHQVGVKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRK 127
           A A Y LPQY     +QAQQLFQ+DAQ IT EALESVK ALA  E+EHKA+TK+KAIPRK
Sbjct: 70  APAAYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK 129

Query: 128 AAGQKWEDLTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTK 187
           AAGQ WED TLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTK
Sbjct: 130 AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTK 189

Query: 188 GYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVE 238
           GYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ 
Sbjct: 190 GYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLP 249

[Close]

BLAST of CcUC06G119560 vs. ExPASy TrEMBL
Match: A0A6J1D848 (RNA-binding protein 42 OS=Momordica charantia OX=3673 GN=LOC111018240 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 1.2e-84
Identity = 179/259 (69.11%), Postives = 198/259 (76.45%), Query Frame = 0


Query: 1   MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQPSAPVSAAA-------------PTT 60
           MA P   APS+ SSS   QF +S    FP+PFHLQ SAP +AAA             P  
Sbjct: 1   MAGPSSSAPSAASSSSGAQFTFSNASYFPLPFHLQQSAPPAAAAQYPTPYVAAPGPPPVP 60

Query: 61  APVA------APAAAIYPLPQYHQVGVKQAQQLFQKDAQIITAEALESVKVALARDEMEH 120
            PVA      AP  A+Y LPQY     +QAQQLFQ+DAQ IT EALESVK ALA  E+EH
Sbjct: 61  LPVASVYPTPAPGPAVYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEH 120

Query: 121 KADTKRKAIPRKAAGQKWEDLTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMA 180
           KA+TK+KAIPRKAAGQ WED TLA+WPENDYRLFCGDLGNEVNDDVLS++FSRFPSFNMA
Sbjct: 121 KAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKSFSRFPSFNMA 180

Query: 181 RVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALER 238
           RVVRDKRTGKTKGYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DYEALER
Sbjct: 181 RVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYEALER 240

[Close]

BLAST of CcUC06G119560 vs. ExPASy TrEMBL
Match: A0A6J1FBP0 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.0e-83
Identity = 175/254 (68.90%), Postives = 194/254 (76.38%), Query Frame = 0


Query: 1   MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQPSAPVS---------AAAPTTAPVA 60
           MA P F APS+ SSS   QF YS G  FP+PFHLQ SAP +          AAP    V 
Sbjct: 1   MAGP-FSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVP 60

Query: 61  APAAAIYPLP-----QYHQVGVKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTK 120
            P A++YP P      Y+    +QAQQLFQ+DAQ IT EALESVK ALA  E+EHKA+TK
Sbjct: 61  LPVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120

Query: 121 RKAIPRKAAGQKWEDLTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRD 180
           +KAIPRKAAGQ WED TL +WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRD
Sbjct: 121 KKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRD 180

Query: 181 KRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKT 238
           KRTGKTKGYGFVSF+NP DL  ALKEMNGKYVGNRPIKLRKS WK+R DYEAL R KN T
Sbjct: 181 KRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHT 240

[Close]

BLAST of CcUC06G119560 vs. ExPASy TrEMBL
Match: A0A6J1HLU5 (RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111465380 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.3e-83
Identity = 179/263 (68.06%), Postives = 197/263 (74.90%), Query Frame = 0


Query: 1   MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQPSA---------------------- 60
           MA P F APS+ SSS   QF YS G  FP+PFHLQ SA                      
Sbjct: 1   MAGP-FSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVP 60

Query: 61  -PVSAAAPTTAPVAAPAAAIYPLPQYHQVGVKQAQQLFQKDAQIITAEALESVKVALARD 120
            PV++  PT AP +APAA  Y LPQY     +QAQQLFQ+DAQ IT EALESVK ALA  
Sbjct: 61  LPVASVYPTPAPASAPAA--YTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASS 120

Query: 121 EMEHKADTKRKAIPRKAAGQKWEDLTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPS 180
           E+EHKA+TK+KAIPRKAAGQ WED TL +WPENDYRLFCGDLGNEVNDDVLS+AFSRFPS
Sbjct: 121 EIEHKAETKKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPS 180

Query: 181 FNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYE 238
           FNMARVVRDKRTGKTKGYGFVSF+NP DL  ALKEMNGKYVGNRPIKLRKS WK+R DYE
Sbjct: 181 FNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYE 240

[Close]

BLAST of CcUC06G119560 vs. TAIR 10
Match: AT3G04500.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 284.6 bits (727), Expect = 7.0e-77
Identity = 155/243 (63.79%), Postives = 182/243 (74.90%), Query Frame = 0


Query: 4   PCFWAPSSISSSQFAYSAGPCFPVPFHLQPSAPVSAA--APTTAPVAA-PAAAIYPLP-- 63
           P   + SS SSSQ+ Y+A   +  P+  QP  P +AA      APVA+ P A +YP P  
Sbjct: 5   PSSGSSSSSSSSQYTYAANSYYSAPY--QPPQPYAAAPSPAVPAPVASIPGATVYPQPVG 64

Query: 64  ----QYHQVGVKQAQQLFQKDAQIITAEALESVKVALARDEMEHKADTKRKAIPRKAAGQ 123
                Y     +QA QLFQ+DAQ IT EALE+VK ALA  E EHKA+TK++AIPRKAAGQ
Sbjct: 65  PVPAVYAYPQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRAIPRKAAGQ 124

Query: 124 KWEDLTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGF 183
            WED TL++WPENDYRLFCGDLGNEVNDDVLS+AF+RFP+FNMA+V+RDKRTGKTKGYGF
Sbjct: 125 SWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGF 184

Query: 184 VSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSV 238
           VSF NP DL AALKEMNGKYVGNRPIKLRKS WK+R D EA ER K+ + K  K  K+S+
Sbjct: 185 VSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNKKQKTVKKSI 244

[Close]

BLAST of CcUC06G119560 vs. TAIR 10
Match: AT1G54080.1 (oligouridylate-binding protein 1A )

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-14
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 129 YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK 188
           + +F GDL  EV D  L  +FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207

Query: 189 EMNGKYVGNRPIK 202
           EMNGK+V +R I+
Sbjct: 208 EMNGKWVSSRQIR 220

[Close]

BLAST of CcUC06G119560 vs. TAIR 10
Match: AT3G14100.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 8.5e-14
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 129 YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK 188
           + +F GDL  EV D  L ++FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 144 FNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203

Query: 189 EMNGKYVGNRPIK 202
           EMNGK++ +R I+
Sbjct: 204 EMNGKWLSSRQIR 216

[Close]

BLAST of CcUC06G119560 vs. TAIR 10
Match: AT1G17370.1 (oligouridylate binding protein 1B )

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 129 YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK 188
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 189 EMNGKYVGNRPIK 202
           E+ GK++G+R I+
Sbjct: 199 EITGKWLGSRQIR 211

[Close]

BLAST of CcUC06G119560 vs. TAIR 10
Match: AT1G17370.2 (oligouridylate binding protein 1B )

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 129 YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK 188
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 189 EMNGKYVGNRPIK 202
           E+ GK++G+R I+
Sbjct: 199 EITGKWLGSRQIR 211

The following BLAST results are available for this feature:

BLAST of CcUC06G119560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877084.1	2.0e-113	90.25	RNA-binding protein 42-like [Benincasa hispida]	[more]
KAG6598941.1	3.0e-85	70.85	RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023545858.1	3.0e-85	70.85	RNA-binding protein 42-like [Cucurbita pepo subsp. pepo]	[more]
XP_022929768.1	3.0e-85	70.85	RNA-binding protein 42-like [Cucurbita moschata]	[more]
KAG7029895.1	6.6e-85	70.45	RNA-binding protein 42 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CcUC06G119560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q66KL9	1.7e-38	48.24	RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1	[more]
Q0P5L0	3.7e-38	45.63	RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1	[more]
Q9BTD8	3.7e-38	45.63	RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1	[more]
Q91V81	3.7e-38	45.63	RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2	[more]
Q6AXT7	3.7e-38	45.63	RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2	[more]

BLAST of CcUC06G119560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ET57	1.4e-85	70.85	RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 S...	[more]
A0A6J1KCL6	5.4e-85	70.45	RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111492062 PE=4 SV=...	[more]
A0A6J1D848	1.2e-84	69.11	RNA-binding protein 42 OS=Momordica charantia OX=3673 GN=LOC111018240 PE=4 SV=1	[more]
A0A6J1FBP0	1.0e-83	68.90	RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 S...	[more]
A0A6J1HLU5	1.3e-83	68.06	RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111465380 PE=4 SV=...	[more]

BLAST of CcUC06G119560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04500.1	7.0e-77	63.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G54080.1	6.5e-14	47.95	oligouridylate-binding protein 1A	[more]
AT3G14100.1	8.5e-14	46.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17370.1	3.2e-13	43.84	oligouridylate binding protein 1B	[more]
AT1G17370.2	3.2e-13	43.84	oligouridylate binding protein 1B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 130..203 e-value: 5.5E-20 score: 82.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 131..201 e-value: 7.0E-19 score: 67.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 129..207 score: 16.159025
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 62..203 e-value: 1.2E-22 score: 82.4
None	No IPR available	PANTHER	PTHR47640:SF11	RNA-BINDING PROTEIN 42-LIKE	coord: 41..237
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 41..237
IPR034215	RBM42, RNA recognition motif	CDD	cd12383	RRM_RBM42	coord: 123..205 e-value: 3.56362E-56 score: 172.022
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 114..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G119560.1	CcUC06G119560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding