CcUC06G118980 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G118980
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr06: 14427968 .. 14429683 (+)
RNA-Seq ExpressionCcUC06G118980
SyntenyCcUC06G118980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGATAATCAAGAATTACTGGCATTTTGGACTCAATTTTACAACAAGTCTCCGCTATCTACTTGGATCAGACAACGGCTCCCCCGATCCTGGTAGAAGTTTGACGTTTGGATCCATAGAAGTATCAATTGGTTTGCAGTCAAATGTCCCTTAAAAGGAGCGGACCGATGGGGTCTTTTCAAGCACGAATAGAACGATCTAAAGGGGGTGTGCAACCTAGAGAGATGGCCGTATCTCTTTTCTGAATGTGGTATCGAGGTTCGGTTCATTTGGAAAAGAGGTCGGGAGACCGTGCTGTTGCTCAACCACCTGCAGTATCAGAGACCATTTCCATCACTGAGTCAGAGGATGATGTGGCAAGATGTTTTGAAAAAGTTTTCTTTCTTTCTTTCATAGATAGATATCTCAGCTTTTGGTCTTCGTAGATAGCACTTTAAGGAGTGATTGACCGCAGAGAAGGGCGCAACTAGCTTTTTGTTTTGGCATTAAAGAGTTGCAAATCTTCTTTTACGAGAGTCAAAAAAAAGAAAGAAGAGAAAACCGGCTGGCTTTGCCTTCAACAATAACAAAAAAGGAAATAAGTGATTCGCCGGCCACTAGATCGATGAAGAATCTCTCCAAAATTTGATCTTTGATCAGTGATTCACCGGCCACTAGATCCAGGGATCCCACCTTATTCTCAAACCTGGTGGCTCGGTTGATTGGCACTCCTGTAGGCTCATCTTGCATACAAATTCTGGGGGTCCCAGGTCCTGCATCCACCAAGAACATTTCTTCCCTTAAGCGTAAAACTTCAGATTGTAAGGCGTTTCCACTACATAAGAAAAAACTCGAATTAGATCTTGGAAATGATCGACTCAAATAGATGCTCATCATAAGCTTTTTTTTTCCTCCTCTTCCTATTGATCAGAAGCATCCAGCAGCGTCACGCCAGTCGAAAGAGTTGAGCTACTAAGCTAAGCTGCTGTTGGGGAACTCGGTAGAAGCTATTTGCCGCTTCCGCCTCTGACGGCTTCACAATAGCTCCCCCCTATCTCGAATGAAAAATGAGTCTTCTCCCCTCCACGAGAAGAAATCCGAAAGGAATTTAAAATTCCGAAGGCTTTTTTGTTTGAGCAGGGGGCTCCGAGTCTTGTGTTGACAAAGATCAGGATCCTCGATCTCTTCCTGAATATTGATCAACGTTCTCTCGATATTCAGGAATTGCCCACGCTACCCCTCATCCATTAGTGCATCCATTAAGTAAGAAATGAAGTATTCAGAACCTCGTAAATAAAAGCCTTACTAGAATAGAACTAGACGTCATAGGGGGCAAAGAGGAGCTGTGAAATCAATTCTCTTTTTTTCCTTTTAGCTCCAGAAGCATCCCTGCCTTAAGAAACCTACGCAGTGCTTCGTCGTAGGCTCCAAGTGTGGCTGCTCTTTGAAGTTCCTCGTAGACAAACCTGACTACATCAGGGTCCTCCTCGTAGGACAAGTAATGGGCCAATAAATAGGGCCTCCTCAGAAGGAGTGGCCGCATAAGCGGTTGTTATCCCCCATTGTTGGGATAACCAAAGGACTAGGAAATATGGTCCGAAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGTATTTGATTTTTTTGATAGTGGAAATGCCATAAAGCGCGAACCAAGATCCGTGATACGAAAACAAAAATCAGAATGAGGAAGAAAAAGATATCGTGA

mRNA sequence

ATGAGGATAATCAAGAATTACTGGCATTTTGGACTCAATTTTACAACAAGTCTCCGCTATCTACTTGGATCAGACAACGGCTCCCCCGATCCTGGTAGAAGTTTGACGTTTGGATCCATAGAAGTATCAATTGGTTCGGTTCATTTGGAAAAGAGGTCGGGAGACCGTGCTGTTGCTCAACCACCTGCAGTATCAGAGACCATTTCCATCACTGAGTCAGAGGATGATGTGGCAAGATGTTTTGAAAAAGTTTTCTTTCTTTCTTTCATAGATAGATATCTCAGCTTTTGGTCTTCTGATTCACCGGCCACTAGATCCAGGGATCCCACCTTATTCTCAAACCTGGTGGCTCGGTTGATTGGCACTCCTGTAGGCTCATCTTGCATACAAATTCTGGGGGTCCCAGGTCCTGCATCCACCAAGAACATTTCTTCCCTTAAGCGTAAAACTTCAGATTGGGGCTCCGAGTCTTGTCTCCAGAAGCATCCCTGCCTTAAGAAACCTACGCAGTGCTTCGTCGTAGGCTCCAAGTGTGGCTGCTCTTTGAAGTTCCTCGTAGACAAACCTGACTACATCAGGGTCCTCCTCGTAGGACAATGGAAATGCCATAAAGCGCGAACCAAGATCCGTGATACGAAAACAAAAATCAGAATGAGGAAGAAAAAGATATCGTGA

Coding sequence (CDS)

ATGAGGATAATCAAGAATTACTGGCATTTTGGACTCAATTTTACAACAAGTCTCCGCTATCTACTTGGATCAGACAACGGCTCCCCCGATCCTGGTAGAAGTTTGACGTTTGGATCCATAGAAGTATCAATTGGTTCGGTTCATTTGGAAAAGAGGTCGGGAGACCGTGCTGTTGCTCAACCACCTGCAGTATCAGAGACCATTTCCATCACTGAGTCAGAGGATGATGTGGCAAGATGTTTTGAAAAAGTTTTCTTTCTTTCTTTCATAGATAGATATCTCAGCTTTTGGTCTTCTGATTCACCGGCCACTAGATCCAGGGATCCCACCTTATTCTCAAACCTGGTGGCTCGGTTGATTGGCACTCCTGTAGGCTCATCTTGCATACAAATTCTGGGGGTCCCAGGTCCTGCATCCACCAAGAACATTTCTTCCCTTAAGCGTAAAACTTCAGATTGGGGCTCCGAGTCTTGTCTCCAGAAGCATCCCTGCCTTAAGAAACCTACGCAGTGCTTCGTCGTAGGCTCCAAGTGTGGCTGCTCTTTGAAGTTCCTCGTAGACAAACCTGACTACATCAGGGTCCTCCTCGTAGGACAATGGAAATGCCATAAAGCGCGAACCAAGATCCGTGATACGAAAACAAAAATCAGAATGAGGAAGAAAAAGATATCGTGA

Protein sequence

MRIIKNYWHFGLNFTTSLRYLLGSDNGSPDPGRSLTFGSIEVSIGSVHLEKRSGDRAVAQPPAVSETISITESEDDVARCFEKVFFLSFIDRYLSFWSSDSPATRSRDPTLFSNLVARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSDWGSESCLQKHPCLKKPTQCFVVGSKCGCSLKFLVDKPDYIRVLLVGQWKCHKARTKIRDTKTKIRMRKKKIS
Homology
[Close]
BLAST of CcUC06G118980 vs. NCBI nr
Match: RXH77006.1 (hypothetical protein DVH24_019894 [Malus domestica])

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-18
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 0 

Query: 94  LSFWSSDSPATRSRDPTLFSNLVARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD 153
           + F  SDSPAT  RDPTLFSNL ARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD
Sbjct: 220 ICFLISDSPATTFRDPTLFSNLAARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD 278

[Close]
BLAST of CcUC06G118980 vs. NCBI nr
Match: TQD69937.1 (hypothetical protein C1H46_044529 [Malus baccata])

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-18
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 0 

Query: 94  LSFWSSDSPATRSRDPTLFSNLVARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD 153
           + F  SDSPAT  RDPTLFSNL ARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD
Sbjct: 262 ICFLISDSPATTFRDPTLFSNLAARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD 320

[Close]
BLAST of CcUC06G118980 vs. NCBI nr
Match: KAF1856870.1 (hypothetical protein Lal_00001660 [Lupinus albus])

HSP 1 Score: 101.7 bits (252), Expect = 8.6e-18
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 96  FWSSDSPATRSRDPTLFSNLVARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD 153
           F  SDSPATRSRDPT FSNLVARLIGTPVGSSCIQI+ VPGPASTKNISS KRKTSD
Sbjct: 87  FLISDSPATRSRDPTFFSNLVARLIGTPVGSSCIQIMAVPGPASTKNISSPKRKTSD 143

[Close]
BLAST of CcUC06G118980 vs. NCBI nr
Match: TQD71966.1 (hypothetical protein C1H46_042494 [Malus baccata])

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-13
Identity = 45/59 (76.27%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 94  LSFWSSDSPATRSRDPTLFSNLVARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD 153
           + F   DS AT  RDPTL SN+ ARLIGTPVGSSCIQIL VPG ASTKNISS KRKTSD
Sbjct: 213 ICFLIGDSRATTFRDPTLLSNMAARLIGTPVGSSCIQILWVPGSASTKNISSHKRKTSD 271

[Close]
BLAST of CcUC06G118980 vs. NCBI nr
Match: POO03624.1 (LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_008290 [Trema orientale])

HSP 1 Score: 69.3 bits (168), Expect = 4.7e-08
Identity = 39/58 (67.24%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 94  LSFWSSDSPATRSRDPTLFSNLV-ARLIGTPVGSSCIQILGVPGPASTKNISSLKRKT 151
           + F  SDSPA  S  PTLFSNLV A L GT V SSC+Q LG P P ST NISSLKRKT
Sbjct: 80  ICFLISDSPAFTSTYPTLFSNLVMASLTGTLVSSSCVQTLGAPAPESTMNISSLKRKT 137

[Close]
BLAST of CcUC06G118980 vs. ExPASy TrEMBL
Match: A0A498I067 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019894 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 0 

Query: 94  LSFWSSDSPATRSRDPTLFSNLVARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD 153
           + F  SDSPAT  RDPTLFSNL ARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD
Sbjct: 220 ICFLISDSPATTFRDPTLFSNLAARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD 278

[Close]
BLAST of CcUC06G118980 vs. ExPASy TrEMBL
Match: A0A540K6T8 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_044529 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 0 

Query: 94  LSFWSSDSPATRSRDPTLFSNLVARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD 153
           + F  SDSPAT  RDPTLFSNL ARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD
Sbjct: 262 ICFLISDSPATTFRDPTLFSNLAARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD 320

[Close]
BLAST of CcUC06G118980 vs. ExPASy TrEMBL
Match: A0A6A5LAI0 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001660 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-18
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 96  FWSSDSPATRSRDPTLFSNLVARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD 153
           F  SDSPATRSRDPT FSNLVARLIGTPVGSSCIQI+ VPGPASTKNISS KRKTSD
Sbjct: 87  FLISDSPATRSRDPTFFSNLVARLIGTPVGSSCIQIMAVPGPASTKNISSPKRKTSD 143

[Close]
BLAST of CcUC06G118980 vs. ExPASy TrEMBL
Match: A0A540KCL8 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_042494 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 45/59 (76.27%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 94  LSFWSSDSPATRSRDPTLFSNLVARLIGTPVGSSCIQILGVPGPASTKNISSLKRKTSD 153
           + F   DS AT  RDPTL SN+ ARLIGTPVGSSCIQIL VPG ASTKNISS KRKTSD
Sbjct: 213 ICFLIGDSRATTFRDPTLLSNMAARLIGTPVGSSCIQILWVPGSASTKNISSHKRKTSD 271

[Close]
BLAST of CcUC06G118980 vs. ExPASy TrEMBL
Match: A0A2P5G0P7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_008290 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-08
Identity = 39/58 (67.24%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 94  LSFWSSDSPATRSRDPTLFSNLV-ARLIGTPVGSSCIQILGVPGPASTKNISSLKRKT 151
           + F  SDSPA  S  PTLFSNLV A L GT V SSC+Q LG P P ST NISSLKRKT
Sbjct: 80  ICFLISDSPAFTSTYPTLFSNLVMASLTGTLVSSSCVQTLGAPAPESTMNISSLKRKT 137

The following BLAST results are available for this feature:
BLAST of CcUC06G118980 vs. NCBI nr
Match NameE-valueIdentityDescription
RXH77006.12.9e-1888.14hypothetical protein DVH24_019894 [Malus domestica][more]
TQD69937.12.9e-1888.14hypothetical protein C1H46_044529 [Malus baccata][more]
KAF1856870.18.6e-1889.47hypothetical protein Lal_00001660 [Lupinus albus][more]
TQD71966.13.7e-1376.27hypothetical protein C1H46_042494 [Malus baccata][more]
POO03624.14.7e-0867.24LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_008290 [Trema orientale][more]
BLAST of CcUC06G118980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC06G118980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A498I0671.4e-1888.14Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019894 PE=4 SV=1[more]
A0A540K6T81.4e-1888.14Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_044529 PE=4 SV=1[more]
A0A6A5LAI04.2e-1889.47Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001660 PE=4 SV=1[more]
A0A540KCL81.8e-1376.27Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_042494 PE=4 SV=1[more]
A0A2P5G0P72.3e-0867.24Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_008290 PE=4 SV... [more]
BLAST of CcUC06G118980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G118980.1CcUC06G118980.1mRNA