CcUC06G118870 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G118870
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	ATP synthase protein MI25
Location	CicolChr06: 14380109 .. 14381326 (+)
RNA-Seq Expression	CcUC06G118870
Synteny	CcUC06G118870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCTCCTCAAGGACAGTTCCAGCCTGATAACTACTGGAAAAGCAAGCCCAAGATGCGAAACAGACTTTAGGAAAGTGGTTCAGGTAGCTCAGCTGGTTAGAGCAAAGGACTGAAGGAAACTTGGGCATTTATTACTTGGACCATATTCGCAATTTATTTACATACGCGAACAAATAAAAATTTTGAAGGTATAAATTCTGCAATTGTGGCCTCTATGGGTTCATCGTATTCGTAGCGTTCGATTCCATTCCTGACTAGCGGACAGAAAGACTCCAGCTCTATGATTAACAGTTCCGTTTAAGTCACTTTAGATAGGAGCAGAATGGATGACTTACAACTGAAAGTCAGTTCTTTGGATCGATAGATATATCGTACCACGTAATGGAGATCAGATCTTGGTCTGGATCCGGTGGACCTCCCCAGAAGGTAATTTTAATGTGGCCGATTTCCCCTCTTTTGCAATCAGTTTCGCTACAGCACGATTCAATAATAATCGGTTATTATGATTTCGAGAAAGCCGCTATGGTGAAATCGGTAGACACGCTGCTCTTAGGAAGCAGTGCTAGAGCATCTCGGTTCGAGTCCGAGTGGCGGCATGCCATTTTTTATTATAAAAAAAGTGGGAATACGCCGCGCCTAAAATCATCCCAAGCGCGGCTAATGTGGCTACTAAGCTATTTCTTTGGAAAGCCAAATGCCACTTCTTCCCGTCGCATCCGTCTTCAGGACGATCTAGTCACAGGTTTTCACTTCTCAGTGAGTGAAAGATTTGTCCCCGGGTGTACGTTGAAAGCTTCTATAGTCGAACTCATTCGAGAGGGCTTGGTGGTAGCTCCGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTCAAAAAATGGATGTTTTCTTCCGGTCTCTGGTCTCCGGTCTTTCCATCCGTCTACTGTNGGCGCTTTTGAGTGCCCCTAACCTTGAGGGGGCCGTAGATCGAGTTCTGGGCTAAGGTTACCGCCCTTCGAAACTCCCTTCTGGAAAAGGTGAAGTAGATCGACCAGGTTACCGGAAATGACCAAAGAACAAAAAAGCCAAAAACAGCTACAGCATCAAATGTTCATCCTTGCCCGACTAAAAGAAAGGGTTTGTGCTGCCCGCTCTAAAGGCTTTCCAAGAACTTCCTTGGGTGGGAAAGTCTAG

mRNA sequence

ATGAACCTCCTCAAGGACAGTTCCAGCCTGATAACTACTGGAAAAGCAAGCCCAAGATGCGAAACAGACTTTAGGAAAGTGGTTCAGCCAAATGCCACTTCTTCCCGTCGCATCCGTCTTCAGGACGATCTAGTCACAGGTTTTCACTTCTCAGTGAGTGAAAGATTTGTCCCCGGGTGTACGTTGAAAGCTTCTATAGTCGAACTCATTCGAGAGGGCTTGGTGGTAGCTCCGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATCATCAAATGTTCATCCTTGCCCGACTAAAAGAAAGGGTTTGTGCTGCCCGCTCTAAAGGCTTTCCAAGAACTTCCTTGGGTGGGAAAGTCTAG

Coding sequence (CDS)

ATGAACCTCCTCAAGGACAGTTCCAGCCTGATAACTACTGGAAAAGCAAGCCCAAGATGCGAAACAGACTTTAGGAAAGTGGTTCAGCCAAATGCCACTTCTTCCCGTCGCATCCGTCTTCAGGACGATCTAGTCACAGGTTTTCACTTCTCAGTGAGTGAAAGATTTGTCCCCGGGTGTACGTTGAAAGCTTCTATAGTCGAACTCATTCGAGAGGGCTTGGTGGTAGCTCCGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATCATCAAATGTTCATCCTTGCCCGACTAAAAGAAAGGGTTTGTGCTGCCCGCTCTAAAGGCTTTCCAAGAACTTCCTTGGGTGGGAAAGTCTAG

Protein sequence

MNLLKDSSSLITTGKASPRCETDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKASIVELIREGLVVAPFDLPEAEAESVAGYNHQMFILARLKERVCAARSKGFPRTSLGGKV

Homology

[Close]

BLAST of CcUC06G118870 vs. NCBI nr
Match: KAF8364973.1 (hypothetical protein HHK36_033069 [Tetracentron sinense] >KAF8364978.1 hypothetical protein HHK36_033076 [Tetracentron sinense] >KAF8376872.1 hypothetical protein HHK36_031375 [Tetracentron sinense])

HSP 1 Score: 99.0 bits (245), Expect = 3.1e-17
Identity = 51/76 (67.11%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 11  ITTGKASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGC 70
           + T + +P+CE           + +    PNATSSRRIRLQDDLVTGFHFSVSERFVPGC
Sbjct: 107 LPTARCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLVTGFHFSVSERFVPGC 166

Query: 71  TLKASIVELIREGLVV 77
           TLKASIVELIREGLVV
Sbjct: 167 TLKASIVELIREGLVV 182

[Close]

BLAST of CcUC06G118870 vs. NCBI nr
Match: DAD25535.1 (TPA_asm: hypothetical protein HUJ06_026998 [Nelumbo nucifera] >DAD25586.1 TPA_asm: hypothetical protein HUJ06_027050 [Nelumbo nucifera])

HSP 1 Score: 98.2 bits (243), Expect = 5.2e-17
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 11  ITTGKASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGC 70
           + T + +P+CE           + +    PNATSSRRIRLQDD+VTGFHFSVSERFVPGC
Sbjct: 107 LPTARCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDIVTGFHFSVSERFVPGC 166

Query: 71  TLKASIVELIREGLVV 77
           TLKASIVELIREGLVV
Sbjct: 167 TLKASIVELIREGLVV 182

[Close]

BLAST of CcUC06G118870 vs. NCBI nr
Match: OVA07933.1 (ATPase [Macleaya cordata])

HSP 1 Score: 98.2 bits (243), Expect = 5.2e-17
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 11  ITTGKASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGC 70
           + T + +P+CE           + +    PNATSSRRIRLQDD+VTGFHFSVSERFVPGC
Sbjct: 107 LPTARCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDIVTGFHFSVSERFVPGC 166

Query: 71  TLKASIVELIREGLVV 77
           TLKASIVELIREGLVV
Sbjct: 167 TLKASIVELIREGLVV 182

[Close]

BLAST of CcUC06G118870 vs. NCBI nr
Match: XP_042487697.1 (ATP synthase protein MI25-like [Macadamia integrifolia] >QXX99533.1 ATPase subunit 4 [Macadamia integrifolia] >QXX99575.1 ATPase subunit 4 [Macadamia ternifolia] >QXX99617.1 ATPase subunit 4 [Macadamia tetraphylla])

HSP 1 Score: 98.2 bits (243), Expect = 5.2e-17
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 11  ITTGKASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGC 70
           + T + +P+CE           + +    PNATSSRRIRLQDD+VTGFHFSVSERFVPGC
Sbjct: 107 LPTARCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDIVTGFHFSVSERFVPGC 166

Query: 71  TLKASIVELIREGLVV 77
           TLKASIVELIREGLVV
Sbjct: 167 TLKASIVELIREGLVV 182

[Close]

BLAST of CcUC06G118870 vs. NCBI nr
Match: YP_009498096.1 (Atp4 [Bombax ceiba] >AWT07998.1 Atp4 [Bombax ceiba])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 50/72 (69.44%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 15  KASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA 74
           + +P+CE           + +    PNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA
Sbjct: 110 RCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA 169

Query: 75  SIVELIREGLVV 77
           SIVELIREGLVV
Sbjct: 170 SIVELIREGLVV 181

[Close]

BLAST of CcUC06G118870 vs. ExPASy Swiss-Prot
Match: P68537 (ATP synthase protein MI25 OS=Triticum timopheevii OX=4570 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.1e-15
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 11  ITTGKASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGC 70
           + T + +P+CE           + +     NATSSRRIRLQDD+VTGFHFSVSERFV G 
Sbjct: 107 LPTARCAPKCEKTVQALLCRNLNVKSATLLNATSSRRIRLQDDIVTGFHFSVSERFVSGS 166

Query: 71  TLKASIVELIREGLVV 77
           T KAS ++LIREGL+V
Sbjct: 167 TFKASTIDLIREGLIV 182

[Close]

BLAST of CcUC06G118870 vs. ExPASy Swiss-Prot
Match: P68538 (ATP synthase protein MI25 OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.1e-15
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 11  ITTGKASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGC 70
           + T + +P+CE           + +     NATSSRRIRLQDD+VTGFHFSVSERFV G 
Sbjct: 107 LPTARCAPKCEKTVQALLCRNLNVKSATLLNATSSRRIRLQDDIVTGFHFSVSERFVSGS 166

Query: 71  TLKASIVELIREGLVV 77
           T KAS ++LIREGL+V
Sbjct: 167 TFKASTIDLIREGLIV 182

[Close]

BLAST of CcUC06G118870 vs. ExPASy Swiss-Prot
Match: Q00058 (ATP synthase protein MI25 OS=Oryza sativa subsp. indica OX=39946 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-13
Identity = 44/81 (54.32%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 11  ITTGKASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGC 70
           + T   +P+CE           + +     NATSSRRIRLQDD+VTGFHFSVSERFV G 
Sbjct: 108 LPTAACAPKCEKTVQALLCRNLNVKSATLLNATSSRRIRLQDDIVTGFHFSVSERFVSGS 167

Query: 71  TLKASIVELIREGLVVAPFDL 82
           T KAS VE IRE  V  P DL
Sbjct: 168 TFKASTVEQIREAFV--PIDL 186

[Close]

BLAST of CcUC06G118870 vs. ExPASy Swiss-Prot
Match: P09004 (ATP synthase protein MI25 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-11
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 11  ITTGKASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGC 70
           +   + +P+CE           + +     NATSSRRIRLQDD+VTGFHFSVSER V G 
Sbjct: 111 LPAARCAPKCEKTVQALLCRNLNVKSATLLNATSSRRIRLQDDIVTGFHFSVSERLVSGS 170

Query: 71  T--LKASIVELIREGLVVAPFDL 82
           T  ++AS VE IRE  ++ P DL
Sbjct: 171 TTLVEASTVEQIREAFLLEPRDL 193

[Close]

BLAST of CcUC06G118870 vs. ExPASy Swiss-Prot
Match: P09003 (ATP synthase protein MI25 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.1e-09
Identity = 33/72 (45.83%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 15  KASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA 74
           + +P+CE           + +    PNATSSRRIRLQDD+    H  V +RF P C+ KA
Sbjct: 111 RCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDIAIKMHVLVGKRFCPWCSSKA 170

Query: 75  SIVELIREGLVV 77
             VE IRE LVV
Sbjct: 171 ERVEFIRESLVV 182

[Close]

BLAST of CcUC06G118870 vs. ExPASy TrEMBL
Match: A0A200QBS8 (ATP synthase protein MI25 OS=Macleaya cordata OX=56857 GN=BVC80_8735g15 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 11  ITTGKASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGC 70
           + T + +P+CE           + +    PNATSSRRIRLQDD+VTGFHFSVSERFVPGC
Sbjct: 107 LPTARCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDIVTGFHFSVSERFVPGC 166

Query: 71  TLKASIVELIREGLVV 77
           TLKASIVELIREGLVV
Sbjct: 167 TLKASIVELIREGLVV 182

[Close]

BLAST of CcUC06G118870 vs. ExPASy TrEMBL
Match: S4SKT0 (ATP synthase protein MI25 OS=Gossypium hirsutum OX=3635 GN=atp4 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.3e-17
Identity = 50/72 (69.44%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 15  KASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA 74
           + +P+CE           + +    PNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA
Sbjct: 110 RCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA 169

Query: 75  SIVELIREGLVV 77
           SIVELIREGLVV
Sbjct: 170 SIVELIREGLVV 181

[Close]

BLAST of CcUC06G118870 vs. ExPASy TrEMBL
Match: A0A0N7D759 (ATP synthase protein MI25 OS=Gossypium barbadense OX=3634 GN=atp4 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.3e-17
Identity = 50/72 (69.44%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 15  KASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA 74
           + +P+CE           + +    PNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA
Sbjct: 110 RCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA 169

Query: 75  SIVELIREGLVV 77
           SIVELIREGLVV
Sbjct: 170 SIVELIREGLVV 181

[Close]

BLAST of CcUC06G118870 vs. ExPASy TrEMBL
Match: A0A0M4S8F3 (ATP synthase protein MI25 OS=Cannabis sativa OX=3483 GN=atp4 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.3e-17
Identity = 50/72 (69.44%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 15  KASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA 74
           + +P+CE           + +    PNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA
Sbjct: 111 RCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA 170

Query: 75  SIVELIREGLVV 77
           SIVELIREGLVV
Sbjct: 171 SIVELIREGLVV 182

[Close]

BLAST of CcUC06G118870 vs. ExPASy TrEMBL
Match: A0A0D2PSH5 (ATP synthase protein MI25 OS=Gossypium raimondii OX=29730 GN=atp4 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.3e-17
Identity = 50/72 (69.44%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 15  KASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA 74
           + +P+CE           + +    PNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA
Sbjct: 110 RCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA 169

Query: 75  SIVELIREGLVV 77
           SIVELIREGLVV
Sbjct: 170 SIVELIREGLVV 181

[Close]

BLAST of CcUC06G118870 vs. TAIR 10
Match: ATMG00640.1 (hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding )

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-08
Identity = 32/72 (44.44%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 15  KASPRCE----------TDFRKVVQPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKA 74
           + +P+CE           + +     NATSSRRIR QDDLVT F+  V ++F   C  KA
Sbjct: 111 RCAPKCEKTVQALLCRNLNVKSATLTNATSSRRIRFQDDLVTKFYTLVGKQFAYSCISKA 170

Query: 75  SIVELIREGLVV 77
             VE IRE LVV
Sbjct: 171 ERVEFIRESLVV 182

The following BLAST results are available for this feature:

BLAST of CcUC06G118870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8364973.1	3.1e-17	67.11	hypothetical protein HHK36_033069 [Tetracentron sinense] >KAF8364978.1 hypotheti...	[more]
DAD25535.1	5.2e-17	65.79	TPA_asm: hypothetical protein HUJ06_026998 [Nelumbo nucifera] >DAD25586.1 TPA_as...	[more]
OVA07933.1	5.2e-17	65.79	ATPase [Macleaya cordata]	[more]
XP_042487697.1	5.2e-17	65.79	ATP synthase protein MI25-like [Macadamia integrifolia] >QXX99533.1 ATPase subun...	[more]
YP_009498096.1	1.5e-16	69.44	Atp4 [Bombax ceiba] >AWT07998.1 Atp4 [Bombax ceiba]	[more]

BLAST of CcUC06G118870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P68537	5.1e-15	55.26	ATP synthase protein MI25 OS=Triticum timopheevii OX=4570 PE=3 SV=1	[more]
P68538	5.1e-15	55.26	ATP synthase protein MI25 OS=Triticum aestivum OX=4565 PE=3 SV=1	[more]
Q00058	2.1e-13	54.32	ATP synthase protein MI25 OS=Oryza sativa subsp. indica OX=39946 PE=3 SV=1	[more]
P09004	2.0e-11	48.19	ATP synthase protein MI25 OS=Zea mays OX=4577 PE=2 SV=1	[more]
P09003	7.1e-09	45.83	ATP synthase protein MI25 OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]

BLAST of CcUC06G118870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A200QBS8	2.5e-17	65.79	ATP synthase protein MI25 OS=Macleaya cordata OX=56857 GN=BVC80_8735g15 PE=3 SV=...	[more]
S4SKT0	7.3e-17	69.44	ATP synthase protein MI25 OS=Gossypium hirsutum OX=3635 GN=atp4 PE=3 SV=1	[more]
A0A0N7D759	7.3e-17	69.44	ATP synthase protein MI25 OS=Gossypium barbadense OX=3634 GN=atp4 PE=3 SV=1	[more]
A0A0M4S8F3	7.3e-17	69.44	ATP synthase protein MI25 OS=Cannabis sativa OX=3483 GN=atp4 PE=3 SV=1	[more]
A0A0D2PSH5	7.3e-17	69.44	ATP synthase protein MI25 OS=Gossypium raimondii OX=29730 GN=atp4 PE=3 SV=1	[more]

BLAST of CcUC06G118870 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00640.1	2.1e-08	44.44	hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008688	ATP synthase, F0 complex, subunit B/MI25	PFAM	PF05405	Mt_ATP-synt_B	coord: 29..73 e-value: 3.8E-5 score: 23.4
IPR044988	ATP synthase, F0 complex, subunit MI25, plants	PANTHER	PTHR37774	ATP SYNTHASE PROTEIN MI25-RELATED	coord: 29..77
IPR018086	NADH:ubiquinone oxidoreductase, subunit 1, conserved site	PROSITE	PS00668	COMPLEX1_ND1_2	coord: 78..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G118870.1	CcUC06G118870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0016020	membrane
molecular_function	GO:0015078	proton transmembrane transporter activity