CcUC06G118560 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G118560
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	bark storage protein A
Location	CicolChr06: 13329269 .. 13329517 (-)
RNA-Seq Expression	CcUC06G118560
Synteny	CcUC06G118560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGCATTTGATATTGGTGATATTGGTATTGGAGATCAGCCTCATGACCCATGCAGCTGTTCCTTTCAGTGTTTTGAAACAGATTGTTATAGCAAACAAAAATGGCCCTTATTTGGGCATAGTGGTGCCTAATGCCTTTGAAATGAACCCTCTTCTTCAATCTCCAAACTTTGTGGTTGATCACAATCTTCCACACTTAGATTTTTCAGCTTTGCCAAATCATCATCTATATGTTTTTGTGTAA

mRNA sequence

ATGAAGAGGCATTTGATATTGGTGATATTGGTATTGGAGATCAGCCTCATGACCCATGCAGCTGTTCCTTTCAGTGTTTTGAAACAGATTGTTATAGCAAACAAAAATGGCCCTTATTTGGGCATAGTGGTGCCTAATGCCTTTGAAATGAACCCTCTTCTTCAATCTCCAAACTTTGTGGTTGATCACAATCTTCCACACTTAGATTTTTCAGCTTTGCCAAATCATCATCTATATGTTTTTGTGTAA

Coding sequence (CDS)

ATGAAGAGGCATTTGATATTGGTGATATTGGTATTGGAGATCAGCCTCATGACCCATGCAGCTGTTCCTTTCAGTGTTTTGAAACAGATTGTTATAGCAAACAAAAATGGCCCTTATTTGGGCATAGTGGTGCCTAATGCCTTTGAAATGAACCCTCTTCTTCAATCTCCAAACTTTGTGGTTGATCACAATCTTCCACACTTAGATTTTTCAGCTTTGCCAAATCATCATCTATATGTTTTTGTGTAA

Protein sequence

MKRHLILVILVLEISLMTHAAVPFSVLKQIVIANKNGPYLGIVVPNAFEMNPLLQSPNFVVDHNLPHLDFSALPNHHLYVFV

Homology

[Close]

BLAST of CcUC06G118560 vs. NCBI nr
Match: XP_038880578.1 (bark storage protein A-like [Benincasa hispida])

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-20
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 1  MKRHLI-----LVILVLEISLMTHAAVPFSVLKQIVIANKNGPYLGIVVPNAFEMNPLLQ 60
          M+ HLI     +V++VLEISLMTHAAVP  ++KQI   NKNGPYLGIVVPNAFEM PLLQ
Sbjct: 1  MESHLIWVILSVVVMVLEISLMTHAAVPMGIMKQIDRVNKNGPYLGIVVPNAFEMKPLLQ 60

Query: 61 SPNFVVDHNLPHLDFS 72
          SP+F+VDHNLPHLDFS
Sbjct: 61 SPSFMVDHNLPHLDFS 76

[Close]

BLAST of CcUC06G118560 vs. NCBI nr
Match: XP_011660294.1 (bark storage protein A [Cucumis sativus] >KGN66819.1 hypothetical protein Csa_007555 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 2.8e-19
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1  MKRHLILVIL-----VLEISLMTHAAVPFSVLKQIVIANKNGPYLGIVVPNAFEMNPLLQ 60
          M+  LILVIL     VLEISLMTHAAVP S++K I   NKNGPYLGIVVPNAFEMNPLLQ
Sbjct: 1  MESRLILVILSVVVMVLEISLMTHAAVPKSIMKHIDRVNKNGPYLGIVVPNAFEMNPLLQ 60

Query: 61 SPNFVVDHNLPHLDFS 72
          SP+ + DHNLPHLDFS
Sbjct: 61 SPSLMADHNLPHLDFS 76

[Close]

BLAST of CcUC06G118560 vs. NCBI nr
Match: XP_023516616.1 (bark storage protein A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.6 bits (257), Expect = 8.3e-19
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 7  LVILVLEISLMTHAAVPFSVLKQIVIANKNGPYLGIVVPNAFEMNPLLQSPNFVVDHNLP 66
          +VI+VLEISLM HAAVP +VLKQI + NKNGPYLGIVVPNAFEMNPLLQSP+ VVD  LP
Sbjct: 10 VVIMVLEISLMAHAAVPATVLKQIDMVNKNGPYLGIVVPNAFEMNPLLQSPSLVVDPTLP 69

Query: 67 HLDFS 72
          HLDFS
Sbjct: 70 HLDFS 74

[Close]

BLAST of CcUC06G118560 vs. NCBI nr
Match: KAG6589927.1 (Bark storage protein A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023596.1 Bark storage protein A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MKRHLIL---VILVLEISLMTHAAVPFSVLKQIVIANKNGPYLGIVVPNAFEMNPLLQSP 60
          M+R ++L   VI+VLEISLM HAAVP +VLKQI + NKNGPYLGIVVPNAFEMNPLLQSP
Sbjct: 1  MERPMMLVGVVIMVLEISLMAHAAVPATVLKQIDMVNKNGPYLGIVVPNAFEMNPLLQSP 60

Query: 61 NFVVDHNLPHLDFS 72
          + VVD  LPHLDFS
Sbjct: 61 SLVVDPTLPHLDFS 74

[Close]

BLAST of CcUC06G118560 vs. NCBI nr
Match: XP_022987774.1 (bark storage protein A [Cucurbita maxima])

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 7  LVILVLEISLMTHAAVPFSVLKQIVIANKNGPYLGIVVPNAFEMNPLLQSPNFVVDHNLP 66
          +VI+VLEISLM HAAVP +VLKQI + NKNGPYLGIVVPNAFEMNPLLQSP  VVD  LP
Sbjct: 10 VVIMVLEISLMAHAAVPATVLKQIDMVNKNGPYLGIVVPNAFEMNPLLQSPTLVVDPTLP 69

Query: 67 HLDFS 72
          HLDFS
Sbjct: 70 HLDFS 74

[Close]

BLAST of CcUC06G118560 vs. ExPASy TrEMBL
Match: A0A0A0M0L4 (PNP_UDP_1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G696520 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1  MKRHLILVIL-----VLEISLMTHAAVPFSVLKQIVIANKNGPYLGIVVPNAFEMNPLLQ 60
          M+  LILVIL     VLEISLMTHAAVP S++K I   NKNGPYLGIVVPNAFEMNPLLQ
Sbjct: 1  MESRLILVILSVVVMVLEISLMTHAAVPKSIMKHIDRVNKNGPYLGIVVPNAFEMNPLLQ 60

Query: 61 SPNFVVDHNLPHLDFS 72
          SP+ + DHNLPHLDFS
Sbjct: 61 SPSLMADHNLPHLDFS 76

[Close]

BLAST of CcUC06G118560 vs. ExPASy TrEMBL
Match: A0A6J1JJT3 (bark storage protein A OS=Cucurbita maxima OX=3661 GN=LOC111485222 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.2e-19
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 7  LVILVLEISLMTHAAVPFSVLKQIVIANKNGPYLGIVVPNAFEMNPLLQSPNFVVDHNLP 66
          +VI+VLEISLM HAAVP +VLKQI + NKNGPYLGIVVPNAFEMNPLLQSP  VVD  LP
Sbjct: 10 VVIMVLEISLMAHAAVPATVLKQIDMVNKNGPYLGIVVPNAFEMNPLLQSPTLVVDPTLP 69

Query: 67 HLDFS 72
          HLDFS
Sbjct: 70 HLDFS 74

[Close]

BLAST of CcUC06G118560 vs. ExPASy TrEMBL
Match: A0A6J1HA24 (bark storage protein A OS=Cucurbita moschata OX=3662 GN=LOC111461849 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.9e-19
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 7  LVILVLEISLMTHAAVPFSVLKQIVIANKNGPYLGIVVPNAFEMNPLLQSPNFVVDHNLP 66
          +VI++LEISLM HAAVP +VLKQI + NKNGPYLGIVVPNAFEMNPLLQSP+ VVD  LP
Sbjct: 10 VVIMLLEISLMAHAAVPATVLKQIDMVNKNGPYLGIVVPNAFEMNPLLQSPSLVVDPTLP 69

Query: 67 HLDFS 72
          HLDFS
Sbjct: 70 HLDFS 74

[Close]

BLAST of CcUC06G118560 vs. ExPASy TrEMBL
Match: A0A5D3E1P1 (Bark storage protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00050 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.5e-18
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1  MKRHLILVIL-----VLEISLMTHAAVPFSVLKQIVIANKNGPYLGIVVPNAFEMNPLLQ 60
          M+ HLILVIL     + EISLMTHAAVP +++K I   NKNGPYLGIVVPNAFEM+PLLQ
Sbjct: 1  MESHLILVILSVAVMISEISLMTHAAVPKTIMKHIGRVNKNGPYLGIVVPNAFEMDPLLQ 60

Query: 61 SPNFVVDHNLPHLDFS 72
          SP+ VVDH+LP+ DFS
Sbjct: 61 SPSLVVDHDLPYFDFS 76

[Close]

BLAST of CcUC06G118560 vs. ExPASy TrEMBL
Match: A0A5A7V320 (Bark storage protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001130 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 52/75 (69.33%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 1  MKRHLILVIL-----VLEISLMTHAAVPFSVLKQIVIANKNGPYLGIVVPNAFEMNPLLQ 60
          M+ HLILVIL     + EISLMTHAAVP +++K I   NKNGPYLGIVVPNAFEM+PLLQ
Sbjct: 1  MESHLILVILSVAVMISEISLMTHAAVPKTIMKHIGRVNKNGPYLGIVVPNAFEMDPLLQ 60

Query: 61 SPNFVVDHNLPHLDF 71
          SP+ VVDH+LP+ DF
Sbjct: 61 SPSLVVDHDLPYFDF 75

[Close]

BLAST of CcUC06G118560 vs. TAIR 10
Match: AT4G28940.1 (Phosphorylase superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 5  LILVILVLEISLMTHAAVPFSVLKQIVIANKNGPYLGIVVPNAFEMNPLLQSPNFVVDHN 64
          L++V+ V  +    +  +P + L++I   N+ GPYLGIV PN +E+NPLL S  +    +
Sbjct: 9  LVVVLSVGNVIEEANGEIPRTTLEKIERMNQKGPYLGIVAPNNYELNPLLGSKAYFPSSS 68

Query: 65 LPHLDFS 72
          LP +DF+
Sbjct: 69 LPFIDFA 75

The following BLAST results are available for this feature:

BLAST of CcUC06G118560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880578.1	2.0e-20	73.68	bark storage protein A-like [Benincasa hispida]	[more]
XP_011660294.1	2.8e-19	75.00	bark storage protein A [Cucumis sativus] >KGN66819.1 hypothetical protein Csa_00...	[more]
XP_023516616.1	8.3e-19	81.54	bark storage protein A [Cucurbita pepo subsp. pepo]	[more]
KAG6589927.1	1.1e-18	75.68	Bark storage protein A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023...	[more]
XP_022987774.1	1.1e-18	81.54	bark storage protein A [Cucurbita maxima]	[more]

BLAST of CcUC06G118560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G118560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0L4	1.4e-19	75.00	PNP_UDP_1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G696520 P...	[more]
A0A6J1JJT3	5.2e-19	81.54	bark storage protein A OS=Cucurbita maxima OX=3661 GN=LOC111485222 PE=4 SV=1	[more]
A0A6J1HA24	8.9e-19	80.00	bark storage protein A OS=Cucurbita moschata OX=3662 GN=LOC111461849 PE=4 SV=1	[more]
A0A5D3E1P1	7.5e-18	69.74	Bark storage protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3...	[more]
A0A5A7V320	2.2e-17	69.33	Bark storage protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7...	[more]

BLAST of CcUC06G118560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28940.1	1.0e-06	38.81	Phosphorylase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21234:SF42	PHOSPHORYLASE SUPERFAMILY PROTEIN	coord: 4..71
None	No IPR available	PANTHER	PTHR21234	PURINE NUCLEOSIDE PHOSPHORYLASE	coord: 4..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G118560.1	CcUC06G118560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009116	nucleoside metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity