CcUC06G118160 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G118160
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	serine-rich protein-related
Location	CicolChr06: 12421720 .. 12421986 (+)
RNA-Seq Expression	CcUC06G118160
Synteny	CcUC06G118160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTACCCACACGATTTCCTGCCTCGGAGGGAGTTTTTGGCTGTGAAATGCAATTGGGTCCTCTTGCAAACCACCGCGGCGGAGGCGGAGGCGGCTGAGAGATGCGGCGGCGAAAAGGCGGAAAGGCGATGCTTGTGCTCGCCGACGAGGCACCCGGGGTCGTTTCGTTGCAGGCTTCACCGAAGTGAGTACGTTTGGGTCGGGCGGCGGCGGATGGTAAAAAATGGATCGGCGGAGAGTAAAAAATTGACGAACGATAAGTAA

mRNA sequence

ATGTGTTACCCACACGATTTCCTGCCTCGGAGGGAGTTTTTGGCTGTGAAATGCAATTGGGTCCTCTTGCAAACCACCGCGGCGGAGGCGGAGGCGGCTGAGAGATGCGGCGGCGAAAAGGCGGAAAGGCGATGCTTGTGCTCGCCGACGAGGCACCCGGGGTCGTTTCGTTGCAGGCTTCACCGAAGTGAGTACGTTTGGGTCGGGCGGCGGCGGATGGTAAAAAATGGATCGGCGGAGAGTAAAAAATTGACGAACGATAAGTAA

Coding sequence (CDS)

ATGTGTTACCCACACGATTTCCTGCCTCGGAGGGAGTTTTTGGCTGTGAAATGCAATTGGGTCCTCTTGCAAACCACCGCGGCGGAGGCGGAGGCGGCTGAGAGATGCGGCGGCGAAAAGGCGGAAAGGCGATGCTTGTGCTCGCCGACGAGGCACCCGGGGTCGTTTCGTTGCAGGCTTCACCGAAGTGAGTACGTTTGGGTCGGGCGGCGGCGGATGGTAAAAAATGGATCGGCGGAGAGTAAAAAATTGACGAACGATAAGTAA

Protein sequence

MCYPHDFLPRREFLAVKCNWVLLQTTAAEAEAAERCGGEKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSAESKKLTNDK

Homology

[Close]

BLAST of CcUC06G118160 vs. NCBI nr
Match: KGN65356.1 (hypothetical protein Csa_020011 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 6.5e-30
Identity = 65/90 (72.22%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 1  MCYPHDFLPRREFLAVKCNWVLLQTTAAE--AEAAERCGGEKAERRCLCSPTRHPGSFRC 60
          MCYPH FL RR+F +++CNWVL QTT AE    A E CG E  +RRCLCSPTRHPGSFRC
Sbjct: 1  MCYPHHFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPGSFRC 60

Query: 61 RLHRSEYVWVGRRRMVKNGSAESKKLTNDK 89
          RLHR+EYVWV RRR VKNG AE K LTNDK
Sbjct: 61 RLHRNEYVWVARRRTVKNGPAEGKILTNDK 90

[Close]

BLAST of CcUC06G118160 vs. NCBI nr
Match: KAA0046597.1 (hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 5.5e-29
Identity = 65/90 (72.22%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 1  MCYPHDFLPRREFLAVKCNWVLLQTTAAE--AEAAERCGGEKAERRCLCSPTRHPGSFRC 60
          MCYPH FLPR +FL+ +CNWVL QT  AE    A E CG E  +RRCLCSPT HPGSFRC
Sbjct: 1  MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRC 60

Query: 61 RLHRSEYVWVGRRRMVKNGSAESKKLTNDK 89
          RLHRSEYVWV RRR VKN SAE K LTNDK
Sbjct: 61 RLHRSEYVWVARRRTVKNVSAEVKVLTNDK 90

[Close]

BLAST of CcUC06G118160 vs. NCBI nr
Match: KAG6589902.1 (hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.4 bits (337), Expect = 4.7e-28
Identity = 66/90 (73.33%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 1  MCYPHDFLPRREFLAVKCNWVLLQTTAAEAEAAERCGGEKAERRCLCSPTRHPGSFRCRL 60
          MCYPHD  PRREFL V+CNWVLLQT A    A E  GGE  ++RCLCSPTRHPGSFRCRL
Sbjct: 1  MCYPHDVPPRREFLNVQCNWVLLQTAAT---AVESGGGESVKKRCLCSPTRHPGSFRCRL 60

Query: 61 HRSEYVWVGRRRMVKNGSAESKK--LTNDK 89
          HRSEYVWVGR RMVK+G A SKK  L ND+
Sbjct: 61 HRSEYVWVGRPRMVKSGPAASKKVALFNDE 87

[Close]

BLAST of CcUC06G118160 vs. NCBI nr
Match: PON73298.1 (hypothetical protein PanWU01x14_058020 [Parasponia andersonii])

HSP 1 Score: 70.9 bits (172), Expect = 6.4e-09
Identity = 36/90 (40.00%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 1  MCY-------PHDFLPRREFLAVKCNWVLLQTTAAEA-----EAAERCGGEKAERRCLCS 60
          MCY       P D   RR + A++ N   +  TA  A     E  E  GG   ++ CLCS
Sbjct: 1  MCYSGVALVSPRDLAERRRWHALQANMAAVAETANYAHAPNLEVREAAGGGSVKQYCLCS 60

Query: 61 PTRHPGSFRCRLHRSEYVWVGRRRMVKNGS 79
          PT+HPGSFRCR H++EY W GR   +++ +
Sbjct: 61 PTQHPGSFRCRQHQAEYAWGGRTLRIRSSN 90

[Close]

BLAST of CcUC06G118160 vs. NCBI nr
Match: TKY44651.1 (hypothetical protein E2542_SST30928 [Spatholobus suberectus])

HSP 1 Score: 70.5 bits (171), Expect = 8.3e-09
Identity = 37/75 (49.33%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 1  MCYPHDFLPRREFLAVKCNWVLLQTTAAEAEAAERCGGEKAE----RRCLCSPTRHPGSF 60
          MC+P      RE   V   W++ Q  A  AE   R GG   E    +RC+CSP++HPGSF
Sbjct: 1  MCHPGVPFVSREGSMVHRRWLVFQ-GARHAERQVRDGGSSGESGSVKRCVCSPSQHPGSF 60

Query: 61 RCRLHRSEYVWVGRR 72
          RCRLH  EYVW GRR
Sbjct: 61 RCRLHHGEYVWRGRR 74

[Close]

BLAST of CcUC06G118160 vs. ExPASy TrEMBL
Match: A0A0A0LZG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369510 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.2e-30
Identity = 65/90 (72.22%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 1  MCYPHDFLPRREFLAVKCNWVLLQTTAAE--AEAAERCGGEKAERRCLCSPTRHPGSFRC 60
          MCYPH FL RR+F +++CNWVL QTT AE    A E CG E  +RRCLCSPTRHPGSFRC
Sbjct: 1  MCYPHHFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPGSFRC 60

Query: 61 RLHRSEYVWVGRRRMVKNGSAESKKLTNDK 89
          RLHR+EYVWV RRR VKNG AE K LTNDK
Sbjct: 61 RLHRNEYVWVARRRTVKNGPAEGKILTNDK 90

[Close]

BLAST of CcUC06G118160 vs. ExPASy TrEMBL
Match: A0A5A7TXE6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001380 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.7e-29
Identity = 65/90 (72.22%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 1  MCYPHDFLPRREFLAVKCNWVLLQTTAAE--AEAAERCGGEKAERRCLCSPTRHPGSFRC 60
          MCYPH FLPR +FL+ +CNWVL QT  AE    A E CG E  +RRCLCSPT HPGSFRC
Sbjct: 1  MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRC 60

Query: 61 RLHRSEYVWVGRRRMVKNGSAESKKLTNDK 89
          RLHRSEYVWV RRR VKN SAE K LTNDK
Sbjct: 61 RLHRSEYVWVARRRTVKNVSAEVKVLTNDK 90

[Close]

BLAST of CcUC06G118160 vs. ExPASy TrEMBL
Match: A0A2P5DJ33 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_058020 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.1e-09
Identity = 36/90 (40.00%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 1  MCY-------PHDFLPRREFLAVKCNWVLLQTTAAEA-----EAAERCGGEKAERRCLCS 60
          MCY       P D   RR + A++ N   +  TA  A     E  E  GG   ++ CLCS
Sbjct: 1  MCYSGVALVSPRDLAERRRWHALQANMAAVAETANYAHAPNLEVREAAGGGSVKQYCLCS 60

Query: 61 PTRHPGSFRCRLHRSEYVWVGRRRMVKNGS 79
          PT+HPGSFRCR H++EY W GR   +++ +
Sbjct: 61 PTQHPGSFRCRQHQAEYAWGGRTLRIRSSN 90

[Close]

BLAST of CcUC06G118160 vs. ExPASy TrEMBL
Match: A0A5N5J6W7 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028182 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.0e-09
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 1  MCYPHDFLPR-REFLAVKCNWVLLQTTAAEAE-------AAERCGGEKAERRCLCSPTRH 60
          MC+P   +PR    L V   W++LQ    E E       A    GG  + ++CLCSPTRH
Sbjct: 1  MCHPG--VPRASRNLVVYRRWLVLQAAETETEHAPAEVAATGGSGGAGSTKKCLCSPTRH 60

Query: 61 PGSFRCRLHRSEYVWVGR 71
          PGSFRCR HRS+YVW GR
Sbjct: 61 PGSFRCRHHRSDYVWGGR 76

[Close]

BLAST of CcUC06G118160 vs. ExPASy TrEMBL
Match: A0A6N2KPX4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113725 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.0e-09
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 1  MCYPHDFLPR-REFLAVKCNWVLLQTTAAEAE-------AAERCGGEKAERRCLCSPTRH 60
          MC+P   +PR    L V   W++LQ    E E       A    GG  + ++CLCSPTRH
Sbjct: 1  MCHPG--VPRASRNLVVYRRWLVLQAAETETEHAPAEVAATGGSGGAGSTKKCLCSPTRH 60

Query: 61 PGSFRCRLHRSEYVWVGR 71
          PGSFRCR HRS+YVW GR
Sbjct: 61 PGSFRCRHHRSDYVWGGR 76

[Close]

BLAST of CcUC06G118160 vs. TAIR 10
Match: AT1G52342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 4.9e-07
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 26 TAAEAEAAERCGGE--KAERRCLCSPTRHPGSFRCRLHRSEYVWV 69
          T  EA A  R GG+    +++C+CSP++HP SF+CR H+ EY W+
Sbjct: 29 TDVEATAGHRSGGDGGGGKKKCVCSPSKHPRSFKCRYHQHEYQWL 73

[Close]

BLAST of CcUC06G118160 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related )

HSP 1 Score: 45.4 bits (106), Expect = 2.7e-05
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 0


Query: 40  KAERRCLCSPTRHPGSFRCRLHRS 64
           K  RRC+CSPT HPGSFRC LH++
Sbjct: 118 KISRRCMCSPTTHPGSFRCSLHKN 141

[Close]

BLAST of CcUC06G118160 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.5e-05
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 0


Query: 45 CLCSPTRHPGSFRCRLHRS 64
          CLCSPT HPGSFRCR+HRS
Sbjct: 44 CLCSPTTHPGSFRCRIHRS 62

[Close]

BLAST of CcUC06G118160 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 45.1 bits (105), Expect = 3.5e-05
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 0


Query: 45 CLCSPTRHPGSFRCRLHRS 64
          CLCSPT HPGSFRCR+HRS
Sbjct: 44 CLCSPTTHPGSFRCRIHRS 62

[Close]

BLAST of CcUC06G118160 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 44.3 bits (103), Expect = 6.0e-05
Identity = 16/23 (69.57%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 41  AERRCLCSPTRHPGSFRCRLHRS 64
           + RRC+CSPT HPGSFRC LH++
Sbjct: 122 SRRRCMCSPTTHPGSFRCSLHKN 144

The following BLAST results are available for this feature:

BLAST of CcUC06G118160 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65356.1	6.5e-30	72.22	hypothetical protein Csa_020011 [Cucumis sativus]	[more]
KAA0046597.1	5.5e-29	72.22	hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa]	[more]
KAG6589902.1	4.7e-28	73.33	hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PON73298.1	6.4e-09	40.00	hypothetical protein PanWU01x14_058020 [Parasponia andersonii]	[more]
TKY44651.1	8.3e-09	49.33	hypothetical protein E2542_SST30928 [Spatholobus suberectus]	[more]

BLAST of CcUC06G118160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G118160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZG6	3.2e-30	72.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369510 PE=4 SV=1	[more]
A0A5A7TXE6	2.7e-29	72.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A2P5DJ33	3.1e-09	40.00	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_058020 PE...	[more]
A0A5N5J6W7	4.0e-09	48.72	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028182 PE=4 SV=1	[more]
A0A6N2KPX4	4.0e-09	48.72	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113725 PE=4 SV=...	[more]

BLAST of CcUC06G118160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52342.1	4.9e-07	46.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G11090.1	2.7e-05	70.83	serine-rich protein-related	[more]
AT1G67910.1	3.5e-05	89.47	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	3.5e-05	89.47	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G25280.1	6.0e-05	69.57	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 8..72
None	No IPR available	PANTHER	PTHR33132:SF72	OS01G0778900 PROTEIN	coord: 8..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G118160.1	CcUC06G118160.1	mRNA