CcUC06G117890 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G117890
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description50S ribosomal protein L2, chloroplastic
LocationCicolChr06: 11262148 .. 11262513 (-)
RNA-Seq ExpressionCcUC06G117890
SyntenyCcUC06G117890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTATGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTTCCATTGTTGAGTGAGAAACGGAAAATTCATGGAAAGTTACAATCCCCACTGCGTAATAGTGCACCCGAGAAATTTGAAAATGCTATTAGAAAAAAATAA

mRNA sequence

ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTATGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTTCCATTGTTGAGTGAGAAACGGAAAATTCATGGAAAGTTACAATCCCCACTGCGTAATAGTGCACCCGAGAAATTTGAAAATGCTATTAGAAAAAAATAA

Coding sequence (CDS)

ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTATGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTTCCATTGTTGAGTGAGAAACGGAAAATTCATGGAAAGTTACAATCCCCACTGCGTAATAGTGCACCCGAGAAATTTGAAAATGCTATTAGAAAAAAATAA

Protein sequence

MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVPLLSEKRKIHGKLQSPLRNSAPEKFENAIRKK
Homology
[Close]
BLAST of CcUC06G117890 vs. NCBI nr
Match: KAA0066165.1 (50S ribosomal protein L2 [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-39
Identity = 90/99 (90.91%), Postives = 92/99 (92.93%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVPLLSEKRKIH 100
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGV +    +K H
Sbjct: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPFLQKSH 99

[Close]
BLAST of CcUC06G117890 vs. NCBI nr
Match: TYI93527.1 (hypothetical protein E1A91_D02G141400v1 [Gossypium mustelinum])

HSP 1 Score: 172.6 bits (436), Expect = 2.1e-39
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
          MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ
Sbjct: 1  MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60

Query: 61 VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
          VGN GVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 61 VGNVGVNQKSLGRAGSKCWLGKRPVVRGV 89

[Close]
BLAST of CcUC06G117890 vs. NCBI nr
Match: YP_010119775.1 (ribosomal protein L2 [Hemsleya zhejiangensis] >YP_010119798.1 ribosomal protein L2 [Hemsleya zhejiangensis] >QRC26944.1 ribosomal protein L2 [Hemsleya zhejiangensis] >QRC26945.1 ribosomal protein L2 [Hemsleya zhejiangensis])

HSP 1 Score: 171.8 bits (434), Expect = 3.6e-39
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 222

[Close]
BLAST of CcUC06G117890 vs. NCBI nr
Match: WP_131792711.1 (50S ribosomal protein L2 [Candidatus Frankia datiscae])

HSP 1 Score: 171.8 bits (434), Expect = 3.6e-39
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 35  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 94

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 95  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 123

[Close]
BLAST of CcUC06G117890 vs. NCBI nr
Match: YP_010160873.1 (ribosomal protein L2 [Baccaurea ramiflora] >YP_010160894.1 ribosomal protein L2 [Baccaurea ramiflora] >QRH18379.1 ribosomal protein L2 [Baccaurea ramiflora] >QRH18402.1 ribosomal protein L2 [Baccaurea ramiflora] >QXF60480.1 ribosomal protein L2 [Baccaurea ramiflora] >QXF60502.1 ribosomal protein L2 [Baccaurea ramiflora])

HSP 1 Score: 171.8 bits (434), Expect = 3.6e-39
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 221

[Close]
BLAST of CcUC06G117890 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.8e-42
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 221

[Close]
BLAST of CcUC06G117890 vs. ExPASy Swiss-Prot
Match: Q14F95 (50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-41
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 222

[Close]
BLAST of CcUC06G117890 vs. ExPASy Swiss-Prot
Match: Q14FB6 (50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-41
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 221

[Close]
BLAST of CcUC06G117890 vs. ExPASy Swiss-Prot
Match: A4GYV2 (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-41
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 221

[Close]
BLAST of CcUC06G117890 vs. ExPASy Swiss-Prot
Match: A4QK59 (50S ribosomal protein L2, chloroplastic OS=Arabis hirsuta OX=78191 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-41
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
           VGN GVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221

[Close]
BLAST of CcUC06G117890 vs. ExPASy TrEMBL
Match: A0A5A7VK89 (50S ribosomal protein L2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001710 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.9e-40
Identity = 90/99 (90.91%), Postives = 92/99 (92.93%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVPLLSEKRKIH 100
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGV +    +K H
Sbjct: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPFLQKSH 99

[Close]
BLAST of CcUC06G117890 vs. ExPASy TrEMBL
Match: A0A5D2VVV2 (50S ribosomal protein L2, chloroplastic OS=Gossypium mustelinum OX=34275 GN=E1A91_D02G141400v1 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.0e-39
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
          MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ
Sbjct: 1  MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60

Query: 61 VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
          VGN GVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 61 VGNVGVNQKSLGRAGSKCWLGKRPVVRGV 89

[Close]
BLAST of CcUC06G117890 vs. ExPASy TrEMBL
Match: A0A023T0V5 (50S ribosomal protein L2, chloroplastic OS=Hirtella physophora OX=715485 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 136 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 195

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 196 VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 224

[Close]
BLAST of CcUC06G117890 vs. ExPASy TrEMBL
Match: A0A218KG93 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 221

[Close]
BLAST of CcUC06G117890 vs. ExPASy TrEMBL
Match: A0A7G8QE64 (Ribosomal protein L2 OS=Balanops balansae OX=544656 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 221

[Close]
BLAST of CcUC06G117890 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 169.1 bits (427), Expect = 2.2e-42
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
           VGN GVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221

[Close]
BLAST of CcUC06G117890 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 169.1 bits (427), Expect = 2.2e-42
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLP GEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGV 90
           VGN GVNQKSLGRAGSKCWLGKRPVVRGV
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221

[Close]
BLAST of CcUC06G117890 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 78.2 bits (191), Expect = 5.1e-15
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPYGEVRLISKNCSATVG 60
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLP G+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QVGNAGVNQKSLGRAGSKCWLGKRPVVRGVPL 92
            V N     K L +AG   WLG RP VRGV +
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAM 159

[Close]
BLAST of CcUC06G117890 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 78.2 bits (191), Expect = 5.1e-15
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPYGEVRLISKNCSATVG 60
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLP G+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QVGNAGVNQKSLGRAGSKCWLGKRPVVRGVPL 92
            V N     K L +AG   WLG RP VRGV +
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAM 159

[Close]
BLAST of CcUC06G117890 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-09
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPYGEVRLISKNCSATV 60
           +P G  I N+E+ +G  G LARA+G  A +IA   +S T  +KLP G  +++   C A +
Sbjct: 108 IPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMI 167

Query: 61  GQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVPL 92
           GQV   G  +K L +AG+          CW    PVVRGV +
Sbjct: 168 GQVAGGGRTEKPLLKAGNAYHKYKAKRNCW----PVVRGVAM 205

The following BLAST results are available for this feature:
BLAST of CcUC06G117890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066165.11.6e-3990.9150S ribosomal protein L2 [Cucumis melo var. makuwa][more]
TYI93527.12.1e-3997.75hypothetical protein E1A91_D02G141400v1 [Gossypium mustelinum][more]
YP_010119775.13.6e-3998.88ribosomal protein L2 [Hemsleya zhejiangensis] >YP_010119798.1 ribosomal protein ... [more]
WP_131792711.13.6e-3998.8850S ribosomal protein L2 [Candidatus Frankia datiscae][more]
YP_010160873.13.6e-3998.88ribosomal protein L2 [Baccaurea ramiflora] >YP_010160894.1 ribosomal protein L2 ... [more]
BLAST of CcUC06G117890 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZK54.8e-4298.8850S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=... [more]
Q14F951.1e-4197.7550S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=... [more]
Q14FB61.1e-4197.7550S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=... [more]
A4GYV21.1e-4197.7550S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A... [more]
A4QK591.4e-4197.7550S ribosomal protein L2, chloroplastic OS=Arabis hirsuta OX=78191 GN=rpl2-A PE=... [more]
BLAST of CcUC06G117890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VK897.9e-4090.9150S ribosomal protein L2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5D2VVV21.0e-3997.7550S ribosomal protein L2, chloroplastic OS=Gossypium mustelinum OX=34275 GN=E1A9... [more]
A0A023T0V51.8e-3998.8850S ribosomal protein L2, chloroplastic OS=Hirtella physophora OX=715485 GN=rpl2... [more]
A0A218KG931.8e-3998.8850S ribosomal protein L2, chloroplastic OS=Cucumis sativus var. hardwickii OX=31... [more]
A0A7G8QE641.8e-3998.88Ribosomal protein L2 OS=Balanops balansae OX=544656 GN=rpl2 PE=3 SV=1[more]
BLAST of CcUC06G117890 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00830.12.2e-4296.63ribosomal protein L2 [more]
ATCG01310.12.2e-4296.63ribosomal protein L2 [more]
AT2G44065.15.1e-1545.65Ribosomal protein L2 family [more]
AT2G44065.25.1e-1545.65Ribosomal protein L2 family [more]
AT3G51190.13.2e-0938.24Ribosomal protein L2 family [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 1..102
e-value: 7.6E-32
score: 121.8
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 1..90
e-value: 6.6E-32
score: 110.3
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..62
e-value: 4.2E-29
score: 102.3
IPR014726Ribosomal protein L2, domain 3GENE3D4.10.950.10Ribosomal protein L2, domain 3coord: 63..91
e-value: 6.9E-7
score: 31.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..121
NoneNo IPR availablePANTHERPTHR13691:SF42SUBFAMILY NOT NAMEDcoord: 1..91
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 1..91
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G117890.1CcUC06G117890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity