CcUC06G117740 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G117740
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	agamous-like MADS-box protein AGL62
Location	CicolChr06: 10863177 .. 10863854 (-)
RNA-Seq Expression	CcUC06G117740
Synteny	CcUC06G117740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAATTACAGAGCATTCCGATGAAGAAAACTCTCGGCCGTCAAAAGATCGAAATCAAAAAGTTAGAGAAGAAGAGCAGTAAACAAGTGACGTTTTCGAAACGCCGTGCCGGACTTTTCAAAAAGGCTGGCGAACTCTCTGTTCTCTGCGGAGCAGAGGTTGCCATTATCGTCTTCTCTCCCAACGATAAGGTTTTTTGTTTCGGTCATCCCGATGTCGATGTTCTTTTGGATCGGTATCTCACCGGAAATTTATCACCGCCGAAGCGGGCGGAGAGTTATATTCCTGTAGCGGAGTTTAATCGTGATTTCGCTGATTTTGCATTGGAGTTTGAGGCGGAGAAGAAGCGAGCGGCGGAATTGATTCGGGCGGCGGAGGATTCGAGAAAGAACGGCGGATTTTGGTGGCAGGAGGCGGTGGAAGGGATGAGATTGGAGGAATTGAAGGAGTTCCGGTCGGCATTGATGGATTTGAGAGCCAAAGTGGCAGAGAGAGTTGAGAAATTGACGGCGGTAAGAATCGGAGGACCTCTGCTGCCGGCGCTACCACCACCGCCGCAGCCGATGACGTCGTCGTCGTTTCACCTTGCCGGAAATCACCAACAATTGCCTCCATCGACGGCGTTTCATCTCGCCGGAAACCACCGTGTCGCGACGGGATTAGGGTTTTTCTAG

mRNA sequence

ATGGAGAAATTACAGAGCATTCCGATGAAGAAAACTCTCGGCCGTCAAAAGATCGAAATCAAAAAGTTAGAGAAGAAGAGCAGTAAACAAGTGACGTTTTCGAAACGCCGTGCCGGACTTTTCAAAAAGGCTGGCGAACTCTCTGTTCTCTGCGGAGCAGAGGTTGCCATTATCGTCTTCTCTCCCAACGATAAGGTTTTTTGTTTCGGTCATCCCGATGTCGATGTTCTTTTGGATCGGTATCTCACCGGAAATTTATCACCGCCGAAGCGGGCGGAGAGTTATATTCCTGTAGCGGAGTTTAATCGTGATTTCGCTGATTTTGCATTGGAGTTTGAGGCGGAGAAGAAGCGAGCGGCGGAATTGATTCGGGCGGCGGAGGATTCGAGAAAGAACGGCGGATTTTGGTGGCAGGAGGCGGTGGAAGGGATGAGATTGGAGGAATTGAAGGAGTTCCGGTCGGCATTGATGGATTTGAGAGCCAAAGTGGCAGAGAGAGTTGAGAAATTGACGGCGGTAAGAATCGGAGGACCTCTGCTGCCGGCGCTACCACCACCGCCGCAGCCGATGACGTCGTCGTCGTTTCACCTTGCCGGAAATCACCAACAATTGCCTCCATCGACGGCGTTTCATCTCGCCGGAAACCACCGTGTCGCGACGGGATTAGGGTTTTTCTAG

Coding sequence (CDS)

ATGGAGAAATTACAGAGCATTCCGATGAAGAAAACTCTCGGCCGTCAAAAGATCGAAATCAAAAAGTTAGAGAAGAAGAGCAGTAAACAAGTGACGTTTTCGAAACGCCGTGCCGGACTTTTCAAAAAGGCTGGCGAACTCTCTGTTCTCTGCGGAGCAGAGGTTGCCATTATCGTCTTCTCTCCCAACGATAAGGTTTTTTGTTTCGGTCATCCCGATGTCGATGTTCTTTTGGATCGGTATCTCACCGGAAATTTATCACCGCCGAAGCGGGCGGAGAGTTATATTCCTGTAGCGGAGTTTAATCGTGATTTCGCTGATTTTGCATTGGAGTTTGAGGCGGAGAAGAAGCGAGCGGCGGAATTGATTCGGGCGGCGGAGGATTCGAGAAAGAACGGCGGATTTTGGTGGCAGGAGGCGGTGGAAGGGATGAGATTGGAGGAATTGAAGGAGTTCCGGTCGGCATTGATGGATTTGAGAGCCAAAGTGGCAGAGAGAGTTGAGAAATTGACGGCGGTAAGAATCGGAGGACCTCTGCTGCCGGCGCTACCACCACCGCCGCAGCCGATGACGTCGTCGTCGTTTCACCTTGCCGGAAATCACCAACAATTGCCTCCATCGACGGCGTTTCATCTCGCCGGAAACCACCGTGTCGCGACGGGATTAGGGTTTTTCTAG

Protein sequence

MEKLQSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFGHPDVDVLLDRYLTGNLSPPKRAESYIPVAEFNRDFADFALEFEAEKKRAAELIRAAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQPMTSSSFHLAGNHQQLPPSTAFHLAGNHRVATGLGFF

Homology

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BLAST of CcUC06G117740 vs. NCBI nr
Match: XP_004147877.3 (agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN59988.1 hypothetical protein Csa_002516 [Cucumis sativus])

HSP 1 Score: 420.6 bits (1080), Expect = 8.4e-114
Identity = 214/225 (95.11%), Postives = 219/225 (97.33%), Query Frame = 0


Query: 1   MEKLQSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVF 60
           MEKL +IPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVF
Sbjct: 1   MEKLNTIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVF 60

Query: 61  SPNDKVFCFGHPDVDVLLDRYLTGNLSPPKRAESYIPVAEFNRDFADFALEFEAEKKRAA 120
           SPNDK+FCFGHPDVDVLLDRYLTGNLSPPK AESYIPVAEFNRDFAD ALEFEAEKKRAA
Sbjct: 61  SPNDKLFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAA 120

Query: 121 ELIRAAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKLTAVRIGGPLL 180
           ELIRAAEDSRKNGGFWWQEAVEG+RLEELK+FRSALMDLRAKVAERVEKLTAVRIGGPLL
Sbjct: 121 ELIRAAEDSRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLL 180

Query: 181 PALPPPPQPMTSSSFHLAGNHQQLPPSTAFHLAGNHRVATGLGFF 226
           PALPPPPQPMTSSSFHL GNHQ+LPP TAFHLAGN RVATGLGFF
Sbjct: 181 PALPPPPQPMTSSSFHLIGNHQELPPPTAFHLAGNQRVATGLGFF 225

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BLAST of CcUC06G117740 vs. NCBI nr
Match: XP_008466532.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 417.9 bits (1073), Expect = 5.4e-113
Identity = 216/232 (93.10%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1   MEKLQSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVF 60
           MEKL +IPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVF
Sbjct: 1   MEKLHTIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVF 60

Query: 61  SPNDKVFCFGHPDVDVLLDRYLTGNLSPPKRAESYIPVAEFNRDFADFALEFEAEKKRAA 120
           SPNDKVFCFGHPDVDVLLDRYLTGNLSPPK AESYIPVAEFNRDFADFALEFEAEKKRAA
Sbjct: 61  SPNDKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKKRAA 120

Query: 121 ELIRAAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKLTAVRIGGPLL 180
           ELIRAAEDSRKNGGFWWQEA EGMRLEELK+FRSALMDLRAKVAERVEKLTAVRIGGPLL
Sbjct: 121 ELIRAAEDSRKNGGFWWQEAAEGMRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLL 180

Query: 181 PALPPPPQPM-------TSSSFHLAGNHQQLPPSTAFHLAGNHRVATGLGFF 226
           PALPPPPQP        +SSSFHLAGNHQQLPP  AFHLAGNHRVATGLGFF
Sbjct: 181 PALPPPPQPQPQPQPMTSSSSFHLAGNHQQLPPPRAFHLAGNHRVATGLGFF 232

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BLAST of CcUC06G117740 vs. NCBI nr
Match: KAA0041553.1 (agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa] >TYK19701.1 agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa])

HSP 1 Score: 406.8 bits (1044), Expect = 1.3e-109
Identity = 210/224 (93.75%), Postives = 212/224 (94.64%), Query Frame = 0


Query: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 68
           MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC
Sbjct: 1   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 60

Query: 69  FGHPDVDVLLDRYLTGNLSPPKRAESYIPVAEFNRDFADFALEFEAEKKRAAELIRAAED 128
           FGHPDVDVLLDRYLTGNLSPPK AESYIPVAEFNRDFADFALEFEAEKKRAAELIRAAED
Sbjct: 61  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKKRAAELIRAAED 120

Query: 129 SRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 188
           SRKNGGFWWQEA EGMRLEELK+FRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ
Sbjct: 121 SRKNGGFWWQEAAEGMRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 180

Query: 189 PM-------TSSSFHLAGNHQQLPPSTAFHLAGNHRVATGLGFF 226
           P        +SSSFHLAGNHQQLPP  AFHLAGNHRVATGLGFF
Sbjct: 181 PQPQPQPMTSSSSFHLAGNHQQLPPPRAFHLAGNHRVATGLGFF 224

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BLAST of CcUC06G117740 vs. NCBI nr
Match: XP_038875004.1 (agamous-like MADS-box protein AGL62 [Benincasa hispida])

HSP 1 Score: 370.5 bits (950), Expect = 9.9e-99
Identity = 191/221 (86.43%), Postives = 197/221 (89.14%), Query Frame = 0


Query: 1   MEKLQSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVF 60
           MEKLQSIPMKKTLGRQKIEIKKLEKKS+KQVTFSKRRAGLFKKAGELS+LCG EVAIIVF
Sbjct: 1   MEKLQSIPMKKTLGRQKIEIKKLEKKSTKQVTFSKRRAGLFKKAGELSILCGVEVAIIVF 60

Query: 61  SPNDKVFCFGHPDVDVLLDRYLTGNLSPPKRAESYIPVAEFNRDFADFALEFEAEKKRAA 120
           SPNDKVFCFGHPDV+ LLDRYL  NLSPPK AESYIPV EFNRDFAD ALEFE EKKRA 
Sbjct: 61  SPNDKVFCFGHPDVEGLLDRYLNKNLSPPKPAESYIPVEEFNRDFADVALEFETEKKRAT 120

Query: 121 ELIRAAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKLTAVRIGGPLL 180
           +LIRAAEDSRKNG FWWQE VEGMRL+ELK FRSALMDLRA+VAERVEKLTA RIGG LL
Sbjct: 121 DLIRAAEDSRKNGRFWWQEPVEGMRLDELKVFRSALMDLRARVAERVEKLTAARIGGLLL 180

Query: 181 PALPPPPQPMTSSSFHLAGNHQQLPPSTAFHLAGNHRVATG 222
           PALPPPPQ MTSSSFHLAGN Q LPP T F LAGNH    G
Sbjct: 181 PALPPPPQSMTSSSFHLAGNQQPLPPPTVFELAGNHSTQRG 221

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BLAST of CcUC06G117740 vs. NCBI nr
Match: KAG6574839.1 (Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 361.3 bits (926), Expect = 6.0e-96
Identity = 191/223 (85.65%), Postives = 200/223 (89.69%), Query Frame = 0


Query: 5   QSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPND 64
           +SIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPND
Sbjct: 9   KSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPND 68

Query: 65  KVFCFGHPDVDVLLDRYLTGNLSPPKRAESYIPVAEFNRDFADFALEFEAEKKRAAELIR 124
           KVFCFGHPDVDVLLDRYLTGNLSPPK AESY+PVAEFNRDFAD  LEFEAEKKRA ELI+
Sbjct: 69  KVFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQ 128

Query: 125 AAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKLTAVRIGGPLLPAL- 184
           A+E+SR +GGFWW+EAVEGMRLEELKEFRS+LMDLRAKVAE+VEKLTAVRIGGPLLPAL 
Sbjct: 129 ASEESRNSGGFWWEEAVEGMRLEELKEFRSSLMDLRAKVAEKVEKLTAVRIGGPLLPALP 188

Query: 185 -PPPPQPMTSSSFHLAGNHQQLPPSTAFHLAGNHRVATGLGFF 226
            PPPPQPMT             PPS  FHLAGNH VATGLGFF
Sbjct: 189 PPPPPQPMT-------------PPS--FHLAGNHHVATGLGFF 216

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BLAST of CcUC06G117740 vs. ExPASy Swiss-Prot
Match: Q9FKK2 (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.6e-29
Identity = 72/163 (44.17%), Postives = 101/163 (61.96%), Query Frame = 0


Query: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 68
           +KK+ GRQKIE+ K++ +S+ QVTFSKRR+GLFKKA EL  LCGAEVAI+VFSP  KVF 
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 69  FGHPDVDVLLDRYLTGNLSPP--------KRAESYIPVAEFNRDFADFALEFEAEKKRAA 128
           FGHP+VD ++DR++  N  PP        +       V + N        + E EKK+  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 129 ELIRAAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKV 164
           EL +  E ++  G  WW++ VE + L +L+ F+  L +L+  V
Sbjct: 122 ELKKIREKTKALGN-WWEDPVEELALSQLEGFKGNLENLKKVV 163

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BLAST of CcUC06G117740 vs. ExPASy Swiss-Prot
Match: Q4PSU4 (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.2e-27
Identity = 72/159 (45.28%), Postives = 102/159 (64.15%), Query Frame = 0


Query: 10  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 69
           K+++GRQKI + K++K+S +QVTFSKRRAGLFKKA EL  LCGAE+ IIVFSP  K F F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 70  GHPDVDVLLDRYLTGN---LSPPKRAE-SYIPVAEFNRDFADFALEFEAEKKRAAELIRA 129
           GHP V+ +LDRY++ N   L+  ++ + S     E N        E E EKK+   +   
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 130 AEDS-RKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKV 164
            ++S R++   WW++ VE M + +L+E + AL +LR  V
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]

BLAST of CcUC06G117740 vs. ExPASy Swiss-Prot
Match: O80807 (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.2e-23
Identity = 70/167 (41.92%), Postives = 99/167 (59.28%), Query Frame = 0


Query: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 68
           +KKTLGR+K+EI K+ K+S+ QVTFSKR+AGLFKKA E   LC A++A+IVFSP  KVF 
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 69  FGHPDVDVLLDRY---LTGNLSPPKRAESY--IPVAEFNRDFADFALEFEAEKKRAAELI 128
           FGHP+VDVLLD +   + G+ +     ESY  + V   N+ + +   E E E+K      
Sbjct: 62  FGHPNVDVLLDHFRGCVVGH-NNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRA 121

Query: 129 RAAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKL 171
           +  E   +N   WW ++   + L +       L DL+  V E+  +L
Sbjct: 122 Q-NERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQL 166

[Close]

BLAST of CcUC06G117740 vs. ExPASy Swiss-Prot
Match: Q9LMM8 (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-21
Identity = 61/165 (36.97%), Postives = 95/165 (57.58%), Query Frame = 0


Query: 10  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 69
           +K LGR+KIE+ K+  +S+ QVTFSKRR+GLFKK  EL  LC AE+AIIVFSP+ K + F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 70  GHPDVDVLLD----RYLTGNLSPPKRAESYIPVAEFNRDFADFALEFEAEKKRAAELIRA 129
           GHP+V+ LLD    R +  N +    + + + +   N    +   E E E++    +++ 
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQ- 122

Query: 130 AEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKL 171
            E   K+   WW+ +   + L +    +  L  L+ +V E+V +L
Sbjct: 123 NERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

[Close]

BLAST of CcUC06G117740 vs. ExPASy Swiss-Prot
Match: O64703 (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.2e-19
Identity = 58/168 (34.52%), Postives = 101/168 (60.12%), Query Frame = 0


Query: 13  LGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFGHP 72
           +GR+KI+++ ++  +++QVTFSKRR GLFKKA EL+ LC AE+ I+VFSP  K F +G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 73  DVDVLLDRYL----TGNLSPPKRAESYIPVAEFNRDFADFA-LEFEAEKKR---AAELIR 132
           ++D + +R++      +    +++ +Y P  +   +  D    E EAEK+R   + E + 
Sbjct: 61  NLDSVAERFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 120

Query: 133 AAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKLTA 173
           +A D R      ++E++E + L+EL E++  L  +  ++  +V  L A
Sbjct: 121 SAGDER------FKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQA 162

[Close]

BLAST of CcUC06G117740 vs. ExPASy TrEMBL
Match: A0A0A0LE01 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.1e-114
Identity = 214/225 (95.11%), Postives = 219/225 (97.33%), Query Frame = 0


Query: 1   MEKLQSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVF 60
           MEKL +IPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVF
Sbjct: 1   MEKLNTIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVF 60

Query: 61  SPNDKVFCFGHPDVDVLLDRYLTGNLSPPKRAESYIPVAEFNRDFADFALEFEAEKKRAA 120
           SPNDK+FCFGHPDVDVLLDRYLTGNLSPPK AESYIPVAEFNRDFAD ALEFEAEKKRAA
Sbjct: 61  SPNDKLFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAA 120

Query: 121 ELIRAAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKLTAVRIGGPLL 180
           ELIRAAEDSRKNGGFWWQEAVEG+RLEELK+FRSALMDLRAKVAERVEKLTAVRIGGPLL
Sbjct: 121 ELIRAAEDSRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLL 180

Query: 181 PALPPPPQPMTSSSFHLAGNHQQLPPSTAFHLAGNHRVATGLGFF 226
           PALPPPPQPMTSSSFHL GNHQ+LPP TAFHLAGN RVATGLGFF
Sbjct: 181 PALPPPPQPMTSSSFHLIGNHQELPPPTAFHLAGNQRVATGLGFF 225

[Close]

BLAST of CcUC06G117740 vs. ExPASy TrEMBL
Match: A0A1S3CRI8 (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103503920 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.6e-113
Identity = 216/232 (93.10%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1   MEKLQSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVF 60
           MEKL +IPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVF
Sbjct: 1   MEKLHTIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVF 60

Query: 61  SPNDKVFCFGHPDVDVLLDRYLTGNLSPPKRAESYIPVAEFNRDFADFALEFEAEKKRAA 120
           SPNDKVFCFGHPDVDVLLDRYLTGNLSPPK AESYIPVAEFNRDFADFALEFEAEKKRAA
Sbjct: 61  SPNDKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKKRAA 120

Query: 121 ELIRAAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKLTAVRIGGPLL 180
           ELIRAAEDSRKNGGFWWQEA EGMRLEELK+FRSALMDLRAKVAERVEKLTAVRIGGPLL
Sbjct: 121 ELIRAAEDSRKNGGFWWQEAAEGMRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLL 180

Query: 181 PALPPPPQPM-------TSSSFHLAGNHQQLPPSTAFHLAGNHRVATGLGFF 226
           PALPPPPQP        +SSSFHLAGNHQQLPP  AFHLAGNHRVATGLGFF
Sbjct: 181 PALPPPPQPQPQPQPMTSSSSFHLAGNHQQLPPPRAFHLAGNHRVATGLGFF 232

[Close]

BLAST of CcUC06G117740 vs. ExPASy TrEMBL
Match: A0A5D3D807 (Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G001020 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.1e-110
Identity = 210/224 (93.75%), Postives = 212/224 (94.64%), Query Frame = 0


Query: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 68
           MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC
Sbjct: 1   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 60

Query: 69  FGHPDVDVLLDRYLTGNLSPPKRAESYIPVAEFNRDFADFALEFEAEKKRAAELIRAAED 128
           FGHPDVDVLLDRYLTGNLSPPK AESYIPVAEFNRDFADFALEFEAEKKRAAELIRAAED
Sbjct: 61  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKKRAAELIRAAED 120

Query: 129 SRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 188
           SRKNGGFWWQEA EGMRLEELK+FRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ
Sbjct: 121 SRKNGGFWWQEAAEGMRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 180

Query: 189 PM-------TSSSFHLAGNHQQLPPSTAFHLAGNHRVATGLGFF 226
           P        +SSSFHLAGNHQQLPP  AFHLAGNHRVATGLGFF
Sbjct: 181 PQPQPQPMTSSSSFHLAGNHQQLPPPRAFHLAGNHRVATGLGFF 224

[Close]

BLAST of CcUC06G117740 vs. ExPASy TrEMBL
Match: A0A6J1H4M6 (agamous-like MADS-box protein AGL62 OS=Cucurbita moschata OX=3662 GN=LOC111460353 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.9e-96
Identity = 191/223 (85.65%), Postives = 200/223 (89.69%), Query Frame = 0


Query: 5   QSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPND 64
           +SIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPND
Sbjct: 9   KSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPND 68

Query: 65  KVFCFGHPDVDVLLDRYLTGNLSPPKRAESYIPVAEFNRDFADFALEFEAEKKRAAELIR 124
           KVFCFGHPDVDVLLDRYLTGNLSPPK AESY+PVAEFNRDFAD  LEFEAEKKRA ELI+
Sbjct: 69  KVFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQ 128

Query: 125 AAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKLTAVRIGGPLLPALP 184
           A+E+SR +GGFWW+EAVEGMRLEELKEFRS+LMDLRAKVAE+VEKLTAVRIGGPLLPALP
Sbjct: 129 ASEESRNSGGFWWEEAVEGMRLEELKEFRSSLMDLRAKVAEKVEKLTAVRIGGPLLPALP 188

Query: 185 PPP--QPMTSSSFHLAGNHQQLPPSTAFHLAGNHRVATGLGFF 226
           PPP  QPMT             PPS  FHLAGNH VATGLGFF
Sbjct: 189 PPPPTQPMT-------------PPS--FHLAGNHHVATGLGFF 216

[Close]

BLAST of CcUC06G117740 vs. ExPASy TrEMBL
Match: A0A6J1KVC9 (agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111499040 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.8e-96
Identity = 188/221 (85.07%), Postives = 199/221 (90.05%), Query Frame = 0


Query: 5   QSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPND 64
           +SIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPND
Sbjct: 9   KSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPND 68

Query: 65  KVFCFGHPDVDVLLDRYLTGNLSPPKRAESYIPVAEFNRDFADFALEFEAEKKRAAELIR 124
           KVFCFGHP+VDVLLDRYLTGNLSPPK AESY+PVAEFNRDFAD  LEFEAEKKRA ELI+
Sbjct: 69  KVFCFGHPNVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQ 128

Query: 125 AAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKLTAVRIGGPLLPALP 184
           A+E+SR +GGFWW+EAVEGMRLEELKEFRS+LMDLRAKVAE+VEKLTAVRIGGPLLPALP
Sbjct: 129 ASEESRNSGGFWWEEAVEGMRLEELKEFRSSLMDLRAKVAEKVEKLTAVRIGGPLLPALP 188

Query: 185 PPPQPMTSSSFHLAGNHQQLPPSTAFHLAGNHRVATGLGFF 226
           PPP PM             +PPS  FHLAGNH VATGLGFF
Sbjct: 189 PPPPPM-------------MPPS--FHLAGNHHVATGLGFF 214

[Close]

BLAST of CcUC06G117740 vs. TAIR 10
Match: AT5G60440.1 (AGAMOUS-like 62 )

HSP 1 Score: 129.0 bits (323), Expect = 4.7e-30
Identity = 72/163 (44.17%), Postives = 101/163 (61.96%), Query Frame = 0


Query: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 68
           +KK+ GRQKIE+ K++ +S+ QVTFSKRR+GLFKKA EL  LCGAEVAI+VFSP  KVF 
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 69  FGHPDVDVLLDRYLTGNLSPP--------KRAESYIPVAEFNRDFADFALEFEAEKKRAA 128
           FGHP+VD ++DR++  N  PP        +       V + N        + E EKK+  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 129 ELIRAAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKV 164
           EL +  E ++  G  WW++ VE + L +L+ F+  L +L+  V
Sbjct: 122 ELKKIREKTKALGN-WWEDPVEELALSQLEGFKGNLENLKKVV 163

[Close]

BLAST of CcUC06G117740 vs. TAIR 10
Match: AT2G24840.1 (AGAMOUS-like 61 )

HSP 1 Score: 122.5 bits (306), Expect = 4.4e-28
Identity = 72/159 (45.28%), Postives = 102/159 (64.15%), Query Frame = 0


Query: 10  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 69
           K+++GRQKI + K++K+S +QVTFSKRRAGLFKKA EL  LCGAE+ IIVFSP  K F F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 70  GHPDVDVLLDRYLTGN---LSPPKRAE-SYIPVAEFNRDFADFALEFEAEKKRAAELIRA 129
           GHP V+ +LDRY++ N   L+  ++ + S     E N        E E EKK+   +   
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 130 AEDS-RKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKV 164
            ++S R++   WW++ VE M + +L+E + AL +LR  V
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]

BLAST of CcUC06G117740 vs. TAIR 10
Match: AT1G65360.1 (AGAMOUS-like 23 )

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-24
Identity = 70/167 (41.92%), Postives = 99/167 (59.28%), Query Frame = 0


Query: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 68
           +KKTLGR+K+EI K+ K+S+ QVTFSKR+AGLFKKA E   LC A++A+IVFSP  KVF 
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 69  FGHPDVDVLLDRY---LTGNLSPPKRAESY--IPVAEFNRDFADFALEFEAEKKRAAELI 128
           FGHP+VDVLLD +   + G+ +     ESY  + V   N+ + +   E E E+K      
Sbjct: 62  FGHPNVDVLLDHFRGCVVGH-NNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRA 121

Query: 129 RAAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKL 171
           +  E   +N   WW ++   + L +       L DL+  V E+  +L
Sbjct: 122 Q-NERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQL 166

[Close]

BLAST of CcUC06G117740 vs. TAIR 10
Match: AT4G36590.1 (MADS-box transcription factor family protein )

HSP 1 Score: 105.9 bits (263), Expect = 4.3e-23
Identity = 66/183 (36.07%), Postives = 100/183 (54.64%), Query Frame = 0


Query: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 68
           ++ T GRQKIE+KK+E +S+ QVTFSKRR GLFKKA EL  L GAE+ +IVFSP  KVF 
Sbjct: 2   VRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFS 61

Query: 69  FGHPDVDVLLDRYLTGNLSP----------------PKRAESYIPVAEFNRDFADFALEF 128
           FGHP V  L+ R+   N +                 P R   Y+     N    +     
Sbjct: 62  FGHPSVQELIHRFSNPNHNSAIVHHQNNNLQLVETRPDRNIQYL-----NNILTEVLANQ 121

Query: 129 EAEKKRAAELIRAAEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKLTA 176
           E EK++   ++   ++SR+  G W+++ V+ + + E  +  SAL D++ K+   + + + 
Sbjct: 122 EKEKQKRM-VLDLLKESREQVGNWYEKDVKDLDMNETNQLISALQDVKKKLVREMSQYSQ 178

[Close]

BLAST of CcUC06G117740 vs. TAIR 10
Match: AT1G01530.1 (AGAMOUS-like 28 )

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-22
Identity = 61/165 (36.97%), Postives = 95/165 (57.58%), Query Frame = 0


Query: 10  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 69
           +K LGR+KIE+ K+  +S+ QVTFSKRR+GLFKK  EL  LC AE+AIIVFSP+ K + F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 70  GHPDVDVLLD----RYLTGNLSPPKRAESYIPVAEFNRDFADFALEFEAEKKRAAELIRA 129
           GHP+V+ LLD    R +  N +    + + + +   N    +   E E E++    +++ 
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQ- 122

Query: 130 AEDSRKNGGFWWQEAVEGMRLEELKEFRSALMDLRAKVAERVEKL 171
            E   K+   WW+ +   + L +    +  L  L+ +V E+V +L
Sbjct: 123 NERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

The following BLAST results are available for this feature:

BLAST of CcUC06G117740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147877.3	8.4e-114	95.11	agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN59988.1 hypothetical p...	[more]
XP_008466532.1	5.4e-113	93.10	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]
KAA0041553.1	1.3e-109	93.75	agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa] >TYK19701.1 agamo...	[more]
XP_038875004.1	9.9e-99	86.43	agamous-like MADS-box protein AGL62 [Benincasa hispida]	[more]
KAG6574839.1	6.0e-96	85.65	Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. soro...	[more]

BLAST of CcUC06G117740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKK2	6.6e-29	44.17	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=...	[more]
Q4PSU4	6.2e-27	45.28	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=...	[more]
O80807	3.2e-23	41.92	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=...	[more]
Q9LMM8	3.0e-21	36.97	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=...	[more]
O64703	6.2e-19	34.52	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=...	[more]

BLAST of CcUC06G117740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE01	4.1e-114	95.11	MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G860240 PE...	[more]
A0A1S3CRI8	2.6e-113	93.10	agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103503920 PE=4...	[more]
A0A5D3D807	6.1e-110	93.75	Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1H4M6	2.9e-96	85.65	agamous-like MADS-box protein AGL62 OS=Cucurbita moschata OX=3662 GN=LOC11146035...	[more]
A0A6J1KVC9	3.8e-96	85.07	agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111499040 ...	[more]

BLAST of CcUC06G117740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60440.1	4.7e-30	44.17	AGAMOUS-like 62	[more]
AT2G24840.1	4.4e-28	45.28	AGAMOUS-like 61	[more]
AT1G65360.1	2.3e-24	41.92	AGAMOUS-like 23	[more]
AT4G36590.1	4.3e-23	36.07	MADS-box transcription factor family protein	[more]
AT1G01530.1	2.1e-22	36.97	AGAMOUS-like 28	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..129
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 11..175
None	No IPR available	PANTHER	PTHR11945:SF665	AGAMOUS-LIKE MADS-BOX PROTEIN AGL62	coord: 11..175
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 15..35 score: 51.12 coord: 35..50 score: 77.25 coord: 50..71 score: 44.01
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 13..72 e-value: 2.7E-33 score: 126.6
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 23..69 e-value: 1.0E-23 score: 82.6
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 15..69
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 13..73 score: 27.039003
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 25..92 e-value: 7.9E-27 score: 94.9
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 14..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G117740.1	CcUC06G117740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity