CcUC06G117220 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G117220
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr06: 9496203 .. 9498065 (-)
RNA-Seq Expression	CcUC06G117220
Synteny	CcUC06G117220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGAAAACAAGAAAACAGAAGAATGTCAACTTTGAAACACACTGCAAAGCTTTCTAATTTCTTTACATTTCAATTAGCAAAATCCAATAGCAATGGTGCTTTGGGCCAAAAAGCCTTCATCTCCTCTTACCCTACACTTTCAAAAGTCAGTATATACTTATCCATATATTTTCTTATTCTTATTCTTCTTCTTCTTCTTCTTTATCGTTCTTTCATCAATCAATTTGTGCTTTCAGATTTGTTATCAATATTAGTGAAAATTATCTCTTAATTTTATTTTCCTATGTATTTTGATTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACTTGTGAATGCTTTATCTTGGATTGCAAAATTTTATTTTCTTTGTCTTTTCATTCTTCTTGGACCAAATGAGGTTTGATTAAATAAAAAGATATGTGTAGATATGTGTTTAAATCATATGAATTTTTGGATGTATTGAGAGTTTTGTAATTGATAAGAAAAATGTTTGGAAATGGCAGTCAAAGAAGGATGAAGAGACAGTGGATGCATGTATAAAGACTAAAGAAGCAGCAGAATCAGTGAAGGAATGTGCAAAAGAAGTGAGAGAAACAACTGAATTCCTTAGAGACACTGTAGCTTCCACTGCCAAATGTGTAAGCCAATTAATTCAAGATTCAATCTCCCCTTTCACTTATATTTATTTCATTCTATTTAAATTGAAATATCAATAAATCTTATATAACAGTGATGAGAAATTAAAAAACCTTCCAAAGGGTTCGGTTTAAAATATAGTGTTTCATCTCAAAATCAATTGACAAATGGGAGGAGAAGTCTATTTATGTTAAAAAGTGATTTGAACTAGTAATTTAGCGGGGGTTAAATAAAATTAGAACTATTTATCATATTTTAAATTATCTAAAAAAACACTTTTAATTAATCAAAATTAAATAAATGTTTAATTTTCATTTTAAAACACAGTTTCACCCTATTAAAATTGATTCGAATGATTAAAAGTATTTTTTGAATGATTTTGACAATGGGAAGAGTGATTTTAACCAATTTCCAAACATGCTCTTATTTATTTATTTATTTTTTTTTTTTTTTATCACACCTGTAAAAATGATTTTGGTTTTGAATATTCATTAATGTTTGATTTTTATAATGGTTTCAAAATCATCAAATTACTAAATTAGATCTGTCAAATAATTGTTATTATCATTAGGAGACCTTACAATTCTTATCAAATACATGGGTTGACCCTCTTAGAGGGAAGTTCATGTCTATCAGATATGGTATTAGAGACAACAAATCTAAACGGGTGTTCAGTAGTTAAAAACTAACAATAATAAACTAACCAAAGAGGTATCTTCAAGGGACATTATGAAGATTACAAATATGTTTTACCCACATTTGTTCGTTTTCTTTATTTGTAAGTTCAACCAATGCATAACTGAGAGATGATGATTTGATGATGATTTGTGTCTTATATATCCTTTCACTTATGCATTAGTTTGTGTGTTTTGGACTTTTTTGGTTGGTTGGGATTTGACATTTTGGAACAAAAAATTTGAGAAAATTAATTGGAGGTATGCTGTGATTTATAGGTATCAAAAATGACAAAGGAAGTGACAGAAAAGGTATCTGATACAGCAGAAAAGATAACGAAAACAGCAGAAAACATAACAGAGAAAGCAAAGGACACAGTTACAGGAGCATGGGGAACTGCAAAGAACACTACTGAAATTATCAAAGATTTCATTGATAAGTAACCCTTTTCATTATTCTTCTTTTCATATCTATCCACCTCTCTTAATCTCAATAAGAAA

mRNA sequence

TTTGGAAAACAAGAAAACAGAAGAATGTCAACTTTGAAACACACTGCAAAGCTTTCTAATTTCTTTACATTTCAATTAGCAAAATCCAATAGCAATGGTGCTTTGGGCCAAAAAGCCTTCATCTCCTCTTACCCTACACTTTCAAAATCAAAGAAGGATGAAGAGACAGTGGATGCATGTATAAAGACTAAAGAAGCAGCAGAATCAGTGAAGGAATGTGCAAAAGAAGTGAGAGAAACAACTGAATTCCTTAGAGACACTGTAGCTTCCACTGCCAAATGTGTATCAAAAATGACAAAGGAAGTGACAGAAAAGGTATCTGATACAGCAGAAAAGATAACGAAAACAGCAGAAAACATAACAGAGAAAGCAAAGGACACAGTTACAGGAGCATGGGGAACTGCAAAGAACACTACTGAAATTATCAAAGATTTCATTGATAAGTAACCCTTTTCATTATTCTTCTTTTCATATCTATCCACCTCTCTTAATCTCAATAAGAAA

Coding sequence (CDS)

ATGTCAACTTTGAAACACACTGCAAAGCTTTCTAATTTCTTTACATTTCAATTAGCAAAATCCAATAGCAATGGTGCTTTGGGCCAAAAAGCCTTCATCTCCTCTTACCCTACACTTTCAAAATCAAAGAAGGATGAAGAGACAGTGGATGCATGTATAAAGACTAAAGAAGCAGCAGAATCAGTGAAGGAATGTGCAAAAGAAGTGAGAGAAACAACTGAATTCCTTAGAGACACTGTAGCTTCCACTGCCAAATGTGTATCAAAAATGACAAAGGAAGTGACAGAAAAGGTATCTGATACAGCAGAAAAGATAACGAAAACAGCAGAAAACATAACAGAGAAAGCAAAGGACACAGTTACAGGAGCATGGGGAACTGCAAAGAACACTACTGAAATTATCAAAGATTTCATTGATAAGTAA

Protein sequence

MSTLKHTAKLSNFFTFQLAKSNSNGALGQKAFISSYPTLSKSKKDEETVDACIKTKEAAESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKDTVTGAWGTAKNTTEIIKDFIDK

Homology

[Close]

BLAST of CcUC06G117220 vs. NCBI nr
Match: XP_022138632.1 (uncharacterized protein LOC111009748 [Momordica charantia])

HSP 1 Score: 201.1 bits (510), Expect = 6.5e-48
Identity = 115/141 (81.56%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFTFQLAKSNSNGALGQKAFISSYPTLSKSK-KDEETVDACIKTKEAA 60
           MSTLKHTAKLS +    L    SN + G KAFISSYPTLSKSK  DEETVDAC+KTKEAA
Sbjct: 1   MSTLKHTAKLSKY----LFTPKSNASFGHKAFISSYPTLSKSKTTDEETVDACVKTKEAA 60

Query: 61  ESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKDT 120
           E+VKE A+EVRET+EFL+DTVASTAKCVSKMTKEVT KVS+TAEKITKTAENITEKAKDT
Sbjct: 61  EAVKESAREVRETSEFLKDTVASTAKCVSKMTKEVTGKVSETAEKITKTAENITEKAKDT 120

Query: 121 VTGAWGTAKNTTEIIKDFIDK 141
           V+GAWGTAKNTT IIKDFIDK
Sbjct: 121 VSGAWGTAKNTTGIIKDFIDK 137

[Close]

BLAST of CcUC06G117220 vs. NCBI nr
Match: XP_015887495.1 (uncharacterized protein LOC107422546 [Ziziphus jujuba])

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-22
Identity = 79/137 (57.66%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFTFQLAKSNSNGALGQKAFISSYP-TLSKSKKDEETVDACIKTKEAA 60
           MSTLK TAK+S FF     K NSN     KA +++    L   KKD++  D C KTKEAA
Sbjct: 1   MSTLKLTAKISKFFPKTTPKCNSN----HKALLTTATRPLQFFKKDKDVADTCKKTKEAA 60

Query: 61  ESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKDT 120
           E+V++ AKEVRET EF+RDTV +TAK V+KMTKE T+KVS+       TA N TEKAK T
Sbjct: 61  EAVEQGAKEVRETCEFMRDTVETTAKKVTKMTKEATDKVSE-------TAGNFTEKAKGT 120

Query: 121 VTGAWGTAKNTTEIIKD 137
           V+GA G AKN TEIIKD
Sbjct: 121 VSGALGMAKNATEIIKD 126

[Close]

BLAST of CcUC06G117220 vs. NCBI nr
Match: RXH78485.1 (hypothetical protein DVH24_002003 [Malus domestica])

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-21
Identity = 72/140 (51.43%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFTFQLAKSNSNG----ALGQKAFISSYPTLSKSKKDEETVDACIKTK 60
           MS++K   KLS   T+ L K+ +N     +L  + F+       +SKK+++  DAC KTK
Sbjct: 1   MSSMKLVTKLS---TYLLGKTITNNGVMTSLSTRGFVIVPTRPMQSKKEDDEADACAKTK 60

Query: 61  EAAESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKA 120
           EAA++VK+ AKEVR+T EF+RDTV +TAK ++KM KE TEKV       T+TAE +T K 
Sbjct: 61  EAADAVKDGAKEVRQTCEFMRDTVETTAKSMNKMAKETTEKV-------TETAETLTNKT 120

Query: 121 KDTVTGAWGTAKNTTEIIKD 137
           K TV+GAWG AKNTTEIIKD
Sbjct: 121 KGTVSGAWGVAKNTTEIIKD 130

[Close]

BLAST of CcUC06G117220 vs. NCBI nr
Match: XP_008391440.2 (uncharacterized protein LOC103453660 [Malus domestica])

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-21
Identity = 72/140 (51.43%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFTFQLAKSNSNG----ALGQKAFISSYPTLSKSKKDEETVDACIKTK 60
           MS++K   KLS   T+ L K+ +N     +L  + F+       +SKK+++  DAC KTK
Sbjct: 1   MSSMKLITKLS---TYLLGKTITNNGVMTSLSTRGFVIVPTRPMQSKKEDDEADACAKTK 60

Query: 61  EAAESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKA 120
           EAA++VK+ AKEVR+T EF+RDTV +TAK ++KM KE TEKV       T+TAE +T K 
Sbjct: 61  EAADAVKDGAKEVRQTCEFMRDTVETTAKSMNKMAKETTEKV-------TETAETLTNKT 120

Query: 121 KDTVTGAWGTAKNTTEIIKD 137
           K TV+GAWG AKNTTEIIKD
Sbjct: 121 KGTVSGAWGMAKNTTEIIKD 130

[Close]

BLAST of CcUC06G117220 vs. NCBI nr
Match: ONI26983.1 (hypothetical protein PRUPE_1G060600 [Prunus persica])

HSP 1 Score: 112.1 bits (279), Expect = 4.0e-21
Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFF-TFQLAKSNSNGALGQKAFISSYPTLSKSKKDEETVDACIKTKEAA 60
           MS+LK  AKLS    T  +    +  +L  + F+++     +SKK+++  DAC KTKEAA
Sbjct: 4   MSSLKLMAKLSAALPTKTITDRGALTSLSTRVFVTAATRPLQSKKEDDEADACEKTKEAA 63

Query: 61  ESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKDT 120
           ++VK+ AKEVR T EF+RDTV  T K ++KM K       DT EKI++TA+NIT+K K T
Sbjct: 64  DAVKDGAKEVRHTCEFMRDTVEKTTKTITKMAK-------DTTEKISETADNITDKTKGT 123

Query: 121 VTGAWGTAKNTTEIIKD 137
           V+GAWG AKNTTEIIKD
Sbjct: 124 VSGAWGVAKNTTEIIKD 133

[Close]

BLAST of CcUC06G117220 vs. ExPASy TrEMBL
Match: A0A6J1CBN9 (uncharacterized protein LOC111009748 OS=Momordica charantia OX=3673 GN=LOC111009748 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.1e-48
Identity = 115/141 (81.56%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFTFQLAKSNSNGALGQKAFISSYPTLSKSK-KDEETVDACIKTKEAA 60
           MSTLKHTAKLS +    L    SN + G KAFISSYPTLSKSK  DEETVDAC+KTKEAA
Sbjct: 1   MSTLKHTAKLSKY----LFTPKSNASFGHKAFISSYPTLSKSKTTDEETVDACVKTKEAA 60

Query: 61  ESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKDT 120
           E+VKE A+EVRET+EFL+DTVASTAKCVSKMTKEVT KVS+TAEKITKTAENITEKAKDT
Sbjct: 61  EAVKESAREVRETSEFLKDTVASTAKCVSKMTKEVTGKVSETAEKITKTAENITEKAKDT 120

Query: 121 VTGAWGTAKNTTEIIKDFIDK 141
           V+GAWGTAKNTT IIKDFIDK
Sbjct: 121 VSGAWGTAKNTTGIIKDFIDK 137

[Close]

BLAST of CcUC06G117220 vs. ExPASy TrEMBL
Match: A0A6P4A219 (uncharacterized protein LOC107422546 OS=Ziziphus jujuba OX=326968 GN=LOC107422546 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.0e-23
Identity = 79/137 (57.66%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFTFQLAKSNSNGALGQKAFISSYP-TLSKSKKDEETVDACIKTKEAA 60
           MSTLK TAK+S FF     K NSN     KA +++    L   KKD++  D C KTKEAA
Sbjct: 1   MSTLKLTAKISKFFPKTTPKCNSN----HKALLTTATRPLQFFKKDKDVADTCKKTKEAA 60

Query: 61  ESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKDT 120
           E+V++ AKEVRET EF+RDTV +TAK V+KMTKE T+KVS+       TA N TEKAK T
Sbjct: 61  EAVEQGAKEVRETCEFMRDTVETTAKKVTKMTKEATDKVSE-------TAGNFTEKAKGT 120

Query: 121 VTGAWGTAKNTTEIIKD 137
           V+GA G AKN TEIIKD
Sbjct: 121 VSGALGMAKNATEIIKD 126

[Close]

BLAST of CcUC06G117220 vs. ExPASy TrEMBL
Match: A0A498I8V5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_002003 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.6e-22
Identity = 72/140 (51.43%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFTFQLAKSNSNG----ALGQKAFISSYPTLSKSKKDEETVDACIKTK 60
           MS++K   KLS   T+ L K+ +N     +L  + F+       +SKK+++  DAC KTK
Sbjct: 1   MSSMKLVTKLS---TYLLGKTITNNGVMTSLSTRGFVIVPTRPMQSKKEDDEADACAKTK 60

Query: 61  EAAESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKA 120
           EAA++VK+ AKEVR+T EF+RDTV +TAK ++KM KE TEKV       T+TAE +T K 
Sbjct: 61  EAADAVKDGAKEVRQTCEFMRDTVETTAKSMNKMAKETTEKV-------TETAETLTNKT 120

Query: 121 KDTVTGAWGTAKNTTEIIKD 137
           K TV+GAWG AKNTTEIIKD
Sbjct: 121 KGTVSGAWGVAKNTTEIIKD 130

[Close]

BLAST of CcUC06G117220 vs. ExPASy TrEMBL
Match: A0A6J5TG39 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS973 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFF-TFQLAKSNSNGALGQKAFISSYPTLSKSKKDEETVDACIKTKEAA 60
           MS+LK  AKLS    T  +    +  +L  + F+++     +SKK+++  DAC KTKEAA
Sbjct: 4   MSSLKLMAKLSAALPTKTITDRGALTSLSTRVFVTAATRPLQSKKEDDEADACEKTKEAA 63

Query: 61  ESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKDT 120
           +SVK+ AKEVR T EF+RDT+  T K ++KM K       DT EKI++TA+NIT+K K T
Sbjct: 64  DSVKDGAKEVRHTCEFMRDTIEKTTKTMTKMAK-------DTTEKISETADNITDKTKGT 123

Query: 121 VTGAWGTAKNTTEIIKD 137
           V+GAWG AKNTTEIIKD
Sbjct: 124 VSGAWGVAKNTTEIIKD 133

[Close]

BLAST of CcUC06G117220 vs. ExPASy TrEMBL
Match: M5Y331 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021453mg PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFF-TFQLAKSNSNGALGQKAFISSYPTLSKSKKDEETVDACIKTKEAA 60
           MS+LK  AKLS    T  +    +  +L  + F+++     +SKK+++  DAC KTKEAA
Sbjct: 1   MSSLKLMAKLSAALPTKTITDRGALTSLSTRVFVTAATRPLQSKKEDDEADACEKTKEAA 60

Query: 61  ESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKDT 120
           ++VK+ AKEVR T EF+RDTV  T K ++KM K       DT EKI++TA+NIT+K K T
Sbjct: 61  DAVKDGAKEVRHTCEFMRDTVEKTTKTITKMAK-------DTTEKISETADNITDKTKGT 120

Query: 121 VTGAWGTAKNTTEIIKD 137
           V+GAWG AKNTTEIIKD
Sbjct: 121 VSGAWGVAKNTTEIIKD 130

[Close]

BLAST of CcUC06G117220 vs. TAIR 10
Match: AT1G04670.1 (unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 2; Bacteria - 5; Metazoa - 1; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-17
Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 30  KAFISSYPTLSKSKKDEETVDACIKTKEAAESVKECAKEVRETTEFLRDTVASTAKCVSK 89
           + F+S+ P   + K++ E    C K KEAAE+VKE AK+V+ETTE+++D  ++TA  V+K
Sbjct: 24  RTFVSASPRPLQGKEEAE---QCQKVKEAAEAVKEGAKQVKETTEYIQDVASTTAGRVTK 83

Query: 90  MTKEVTEKVSDTAEKITKTAENITEKAKDTVTGAWGTAKNTTEIIKDFI 139
           MTK+VTEKV       T+T + ITEKAK +V+G  GTAKN T+IIK+ I
Sbjct: 84  MTKDVTEKV-------TETTDTITEKAKGSVSGVLGTAKNATDIIKNKI 122

The following BLAST results are available for this feature:

BLAST of CcUC06G117220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138632.1	6.5e-48	81.56	uncharacterized protein LOC111009748 [Momordica charantia]	[more]
XP_015887495.1	1.2e-22	57.66	uncharacterized protein LOC107422546 [Ziziphus jujuba]	[more]
RXH78485.1	1.8e-21	51.43	hypothetical protein DVH24_002003 [Malus domestica]	[more]
XP_008391440.2	3.0e-21	51.43	uncharacterized protein LOC103453660 [Malus domestica]	[more]
ONI26983.1	4.0e-21	51.09	hypothetical protein PRUPE_1G060600 [Prunus persica]	[more]

BLAST of CcUC06G117220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G117220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBN9	3.1e-48	81.56	uncharacterized protein LOC111009748 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6P4A219	6.0e-23	57.66	uncharacterized protein LOC107422546 OS=Ziziphus jujuba OX=326968 GN=LOC10742254...	[more]
A0A498I8V5	8.6e-22	51.43	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_002003 PE=4 SV=1	[more]
A0A6J5TG39	1.9e-21	51.09	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS973 PE=4 SV=...	[more]
M5Y331	1.9e-21	51.09	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021453mg PE=4 SV=1	[more]

BLAST of CcUC06G117220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04670.1	1.3e-17	50.46	unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 2; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.120.20	Apolipoprotein	coord: 35..140 e-value: 1.9E-6 score: 29.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G117220.1	CcUC06G117220.1	mRNA