CcUC06G115640 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G115640
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic
Location	CicolChr06: 7028974 .. 7031135 (-)
RNA-Seq Expression	CcUC06G115640
Synteny	CcUC06G115640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATCTGAGTCGCCCGAAAGTAACAGAGCACATATGAGGTCACCCGAACAAACAAACAAAAAAAACTTTGATTACATCGATAAAGCTGCCTCCTTGCCCAAATCCCAATTCGCTTTGTTCCATAAAATCCACACCAAACCGCTCTCGGCATAAGCATAACCACAAGCTGAGAACTCCCAAGTTCATTTCAATTACCCAACTTATCCTCTTTCAATTCCTTTCCCCGATTAGGTTTAAAAACGTTTCTCTTCTCCGGATTTTGCTTCCGCCGATTCTCATCGCTGGTTCGTAACTTCGTTCACTGCCGGCACGATGTTAAGAATTAGGTATGGATTACGATGCCAGCTCCTTCTCCGTTTCTTTATGCACACACTCACACACATGGCTTCAGGTCGACGGCTGCCTCACTTCTGTTTAATTTCTGATTGAATTCATTGATGGTGTTTGTTTCTGTCGCAAATTCGGCATTCAATTCATCAACAGAATCTACACCAGGCTCAATAGCTCTTAAGTTAGAAAGGATTTCTATGGTTTGGTTTTGTATTGGGAAGATTTGTTACATGATGAACCCACGATTAAACAGAATAATGCCTCATTTCCTGCAGGGGAATCGCTGGGGATGAAGCCGGGGTATAGCCACTCAACTTGGCTGGAGTAACTACAAGAACGAAGATGGCTGCATTTATTCAAGCAAAGATCTGCCCTACCACTATTTCAATATTGGATAGAAGCGTAAGAAGGGAAAATGGGCGTAAGTAACATTCCCTGTAGCCATAAGTTAACTTCTGTGTTGAATCTGAAACTTTCTCAAATATGCACATTCTTTTTTCTCAGCTGTTCGCATTTATAATACGTCTCGTTCTCGTAGAAGTGAAGATTCTTTTGATGCTTGAAATGTTCAAAATGTATTGCAGCAGCCATATTCCTGAATGCTGTATCATTTATACATACTATAGGTTAAAACTCATTTTTAATTAGTTACAATTTAGTTATTTTAGTTTGCAACAATTTCTCATGTTAATTAGTAAGTTATATTATAAAACTTGAGACTTAATTTTTGAAAAGATCTAAAGTGGTAGGAACTAAATTGCTACTAATTTGAAAGTATAGAGCTCAAATTATTTCTTGTTAAAAGACTAGATCATTACACATTAAAGTTCGTAGACTAAATTGTTACATGTAGAAAAGTTTAGGATGAATATTTTTTAACCTATTTACAATTCTCTTGTTCTGAATCTGAATGCACTCCTACATAAGCTTCATTCATATACTCTTTCTTTCTTGACCTTCTTATGCAACATAACAGATAAACTGCGATCCAGGTCTCAAGTTGTGCTTCCACCTCAAGAAGTTTGTAGACGTCATTTAATGTGTAATGGCATGTCATTGGTTGCGTTTCTCACATTTAACAATGAATCGACACCATCTTTGGCCCAGGCCGAAGAAACACCAAATGACAAGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATTTTTGATCCAAATGAGAGAACCAAATCAGGGAAAGTATTGCCAAAGGCTTACCTGAAGTCTGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACCCAAAAGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCAATTCGAGACTATTTAAGCAATTGGTTGGGGCAACAAACAGTTGTTCAGGAGGTATAACAAGTGACAAACAAATAATGTTAGTTCATGATGGTCATAATGAATTTATAACAACATTTTCACTCACTCACATGCAGGAATCTTACGCTGTGCTAGAGAAGGCAATAAGGTCATTGGCTGGTTTTTATGCAAAGGCTGGACCATCTGCGCCACTGCCAGAAGCTGTTAAATCTGATTTACTGAATGATTTGGATAAGGCTGAAGAATCCTTGTAGCTGATGAGCATTTAGATGAATATTTTTGTTAATATAACATTTCACCTCTAGTTTTGTTAGTTTTGTGAGGTATGGAGCTACTTTTGTTGCTATTCTCCACCTTATTGATCATACAAAGGAATTTATGTTGAATGGATTGAAAAAGAGAAGAATCAAAACTGAGCATACATGGCTGCCCCTGTTTCTCACTTCACTTGTATATCGGCTTTTAAACTACAATGAAAGATAT

mRNA sequence

CAAAATCTGAGTCGCCCGAAAGTAACAGAGCACATATGAGGTCACCCGAACAAACAAACAAAAAAAACTTTGATTACATCGATAAAGCTGCCTCCTTGCCCAAATCCCAATTCGCTTTGTTCCATAAAATCCACACCAAACCGCTCTCGGCATAAGCATAACCACAAGCTGAGAACTCCCAAGTTCATTTCAATTACCCAACTTATCCTCTTTCAATTCCTTTCCCCGATTAGGTTTAAAAACGTTTCTCTTCTCCGGATTTTGCTTCCGCCGATTCTCATCGCTGGTTCGTAACTTCGTTCACTGCCGGCACGATGTTAAGAATTAGGGGAATCGCTGGGGATGAAGCCGGGGTATAGCCACTCAACTTGGCTGGAGTAACTACAAGAACGAAGATGGCTGCATTTATTCAAGCAAAGATCTGCCCTACCACTATTTCAATATTGGATAGAAGCGTAAGAAGGGAAAATGGGCATAAACTGCGATCCAGGTCTCAAGTTGTGCTTCCACCTCAAGAAGTTTGTAGACGTCATTTAATGTGTAATGGCATGTCATTGGTTGCGTTTCTCACATTTAACAATGAATCGACACCATCTTTGGCCCAGGCCGAAGAAACACCAAATGACAAGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATTTTTGATCCAAATGAGAGAACCAAATCAGGGAAAGTATTGCCAAAGGCTTACCTGAAGTCTGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACCCAAAAGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCAATTCGAGACTATTTAAGCAATTGGTTGGGGCAACAAACAGTTGTTCAGGAGGAATCTTACGCTGTGCTAGAGAAGGCAATAAGGTCATTGGCTGGTTTTTATGCAAAGGCTGGACCATCTGCGCCACTGCCAGAAGCTGTTAAATCTGATTTACTGAATGATTTGGATAAGGCTGAAGAATCCTTGTAGCTGATGAGCATTTAGATGAATATTTTTGTTAATATAACATTTCACCTCTAGTTTTGTTAGTTTTGTGAGGTATGGAGCTACTTTTGTTGCTATTCTCCACCTTATTGATCATACAAAGGAATTTATGTTGAATGGATTGAAAAAGAGAAGAATCAAAACTGAGCATACATGGCTGCCCCTGTTTCTCACTTCACTTGTATATCGGCTTTTAAACTACAATGAAAGATAT

Coding sequence (CDS)

ATGGCTGCATTTATTCAAGCAAAGATCTGCCCTACCACTATTTCAATATTGGATAGAAGCGTAAGAAGGGAAAATGGGCATAAACTGCGATCCAGGTCTCAAGTTGTGCTTCCACCTCAAGAAGTTTGTAGACGTCATTTAATGTGTAATGGCATGTCATTGGTTGCGTTTCTCACATTTAACAATGAATCGACACCATCTTTGGCCCAGGCCGAAGAAACACCAAATGACAAGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATTTTTGATCCAAATGAGAGAACCAAATCAGGGAAAGTATTGCCAAAGGCTTACCTGAAGTCTGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACCCAAAAGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCAATTCGAGACTATTTAAGCAATTGGTTGGGGCAACAAACAGTTGTTCAGGAGGAATCTTACGCTGTGCTAGAGAAGGCAATAAGGTCATTGGCTGGTTTTTATGCAAAGGCTGGACCATCTGCGCCACTGCCAGAAGCTGTTAAATCTGATTTACTGAATGATTTGGATAAGGCTGAAGAATCCTTGTAG

Protein sequence

MAAFIQAKICPTTISILDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLDKAEESL

Homology

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BLAST of CcUC06G115640 vs. NCBI nr
Match: XP_038875361.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida] >XP_038875362.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida])

HSP 1 Score: 353.6 bits (906), Expect = 1.2e-93
Identity = 183/206 (88.83%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MAAFIQAKICPTTISILDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 60
           MAAFIQA ICPTTIS LDR+++ ENGHKLRSRSQVVLP QEVCRRHLMC+GMSLV FLT 
Sbjct: 1   MAAFIQANICPTTISTLDRNLKSENGHKLRSRSQVVLPSQEVCRRHLMCSGMSLVVFLTC 60

Query: 61  NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN  TPS A+AEETPND EEEDNGVIGTIKSIFDPNE+TKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSARAEETPND-EEEDNGVIGTIKSIFDPNEKTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQ+TVV+EESY VLEKAI+SLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQRTVVREESYVVLEKAIKSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDLLNDLDKAEESL 207
           AGPSAPLPEAVKSD+L+DLDKAEE L
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEEFL 205

[Close]

BLAST of CcUC06G115640 vs. NCBI nr
Match: XP_023549108.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023549109.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023549110.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 349.4 bits (895), Expect = 2.2e-92
Identity = 182/206 (88.35%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MAAFIQAKICPTTISILDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 60
           M AFIQAKICP TIS LDR +  ENGHKLRSRSQVVLP QE+CRR+L+CNGMSLVAFLTF
Sbjct: 1   MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRNLLCNGMSLVAFLTF 60

Query: 61  NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN  TP LA+AEE PND EEE+NGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNALTPLLARAEEMPNDNEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 180
           RESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESYAVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDLLNDLDKAEESL 207
           AGPSAPLPE VKSD+LNDLDKAEE L
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 205

[Close]

BLAST of CcUC06G115640 vs. NCBI nr
Match: XP_022958810.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata] >XP_022958811.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata] >XP_022958812.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata] >XP_022958813.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata] >KAG6574982.1 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349.0 bits (894), Expect = 2.8e-92
Identity = 182/206 (88.35%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MAAFIQAKICPTTISILDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 60
           M AFIQAKICP TIS LDR +  ENGHKLRSRSQVVLP QE+CRR L+CNGMS VAFLTF
Sbjct: 1   MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTF 60

Query: 61  NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN  TP LA+AEE PNDKEEE+NGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 180
           RESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESYAVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDLLNDLDKAEESL 207
           AGPSAPLPE VKSD+LNDLDKAEE L
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 205

[Close]

BLAST of CcUC06G115640 vs. NCBI nr
Match: XP_022138383.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia] >XP_022138384.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia] >XP_022138385.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia] >XP_022138386.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia])

HSP 1 Score: 347.8 bits (891), Expect = 6.3e-92
Identity = 179/206 (86.89%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MAAFIQAKICPTTISILDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 60
           MAAF+QAKICP T S LDR  R ENG KLRSRSQVVLP QEVCRR L+CNGMSLV FL F
Sbjct: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60

Query: 61  NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN S P LA+AEETPNDK+EEDNGV+G IKSIFDPNERTKSGKVLPKAYLKSARE+VKTL
Sbjct: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 180
           RES+QEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTV QEESYA LEKAIRSLA FYAK
Sbjct: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180

Query: 181 AGPSAPLPEAVKSDLLNDLDKAEESL 207
           AGPSAPLPEAVKSD+LNDLDKAEE L
Sbjct: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206

[Close]

BLAST of CcUC06G115640 vs. NCBI nr
Match: XP_008447146.1 (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo] >XP_008447147.1 PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo] >XP_008447148.1 PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo])

HSP 1 Score: 346.3 bits (887), Expect = 1.8e-91
Identity = 180/206 (87.38%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MAAFIQAKICPTTISILDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 60
           MAAFIQAKICP TIS LDRS+  ENG KL SRSQV LP QE+CRRHL+ NGMSLV FLTF
Sbjct: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN  TPS A AEE PN+ EEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG+QT+VQEESY VLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDLLNDLDKAEESL 207
           AGPSAPLPEAVKSD+L+DLDKAE SL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

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BLAST of CcUC06G115640 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 9.9e-48
Identity = 99/138 (71.74%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 69  AQAEETPNDKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDP 128
           AQA E   +K +E  GV+G  K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+P
Sbjct: 65  AQASE---EKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENP 124

Query: 129 KDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLP 188
           KD AKFRR+ADAAKESIRDYLSNW GQ+TV  EESY  LE  IR+LA FY+KAGPSAPLP
Sbjct: 125 KDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLP 184

Query: 189 EAVKSDLLNDLDKAEESL 207
           + VK+++L+DL+KAEE L
Sbjct: 185 DEVKTEILDDLNKAEEFL 199

[Close]

BLAST of CcUC06G115640 vs. ExPASy TrEMBL
Match: A0A6J1H448 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459969 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.4e-92
Identity = 182/206 (88.35%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MAAFIQAKICPTTISILDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 60
           M AFIQAKICP TIS LDR +  ENGHKLRSRSQVVLP QE+CRR L+CNGMS VAFLTF
Sbjct: 1   MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTF 60

Query: 61  NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN  TP LA+AEE PNDKEEE+NGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 180
           RESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESYAVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDLLNDLDKAEESL 207
           AGPSAPLPE VKSD+LNDLDKAEE L
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 205

[Close]

BLAST of CcUC06G115640 vs. ExPASy TrEMBL
Match: A0A6J1CCV0 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009571 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 3.1e-92
Identity = 179/206 (86.89%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MAAFIQAKICPTTISILDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 60
           MAAF+QAKICP T S LDR  R ENG KLRSRSQVVLP QEVCRR L+CNGMSLV FL F
Sbjct: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60

Query: 61  NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN S P LA+AEETPNDK+EEDNGV+G IKSIFDPNERTKSGKVLPKAYLKSARE+VKTL
Sbjct: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 180
           RES+QEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTV QEESYA LEKAIRSLA FYAK
Sbjct: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180

Query: 181 AGPSAPLPEAVKSDLLNDLDKAEESL 207
           AGPSAPLPEAVKSD+LNDLDKAEE L
Sbjct: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206

[Close]

BLAST of CcUC06G115640 vs. ExPASy TrEMBL
Match: A0A1S3BG68 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489666 PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.9e-92
Identity = 180/206 (87.38%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MAAFIQAKICPTTISILDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 60
           MAAFIQAKICP TIS LDRS+  ENG KL SRSQV LP QE+CRRHL+ NGMSLV FLTF
Sbjct: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN  TPS A AEE PN+ EEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG+QT+VQEESY VLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDLLNDLDKAEESL 207
           AGPSAPLPEAVKSD+L+DLDKAE SL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

[Close]

BLAST of CcUC06G115640 vs. ExPASy TrEMBL
Match: A0A0A0K400 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G234690 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.5e-91
Identity = 180/206 (87.38%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MAAFIQAKICPTTISILDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 60
           MAAFI AKICPTTIS LDRS+  E G KL SRS+VVLP QEVCRRHL+ NGMSLV FLTF
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60

Query: 61  NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN  TPS AQAEE PN+ EEEDNGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG+QTVVQEESY VLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDLLNDLDKAEESL 207
           AGPSAPLPEAVKSD+L+DLDK EESL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206

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BLAST of CcUC06G115640 vs. ExPASy TrEMBL
Match: A0A6J1KWY8 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111498971 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.6e-91
Identity = 180/206 (87.38%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MAAFIQAKICPTTISILDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 60
           M AFIQAKICP TIS  DR +  ENGHKLRS SQVVLP QE+CRR L+CNGMSLVAFLTF
Sbjct: 1   MTAFIQAKICPATISTFDR-ISSENGHKLRSWSQVVLPSQELCRRSLLCNGMSLVAFLTF 60

Query: 61  NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN  TP LA+AEETPN KEEE+NGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 180
           RESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ V+QEESYAVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDLLNDLDKAEESL 207
           AGPSAPLPE VKSD+LNDLDKAEE L
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 205

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BLAST of CcUC06G115640 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 191.4 bits (485), Expect = 7.1e-49
Identity = 99/138 (71.74%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 69  AQAEETPNDKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDP 128
           AQA E   +K +E  GV+G  K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+P
Sbjct: 65  AQASE---EKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENP 124

Query: 129 KDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLP 188
           KD AKFRR+ADAAKESIRDYLSNW GQ+TV  EESY  LE  IR+LA FY+KAGPSAPLP
Sbjct: 125 KDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLP 184

Query: 189 EAVKSDLLNDLDKAEESL 207
           + VK+++L+DL+KAEE L
Sbjct: 185 DEVKTEILDDLNKAEEFL 199

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BLAST of CcUC06G115640 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.4e-04
Identity = 26/102 (25.49%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 109 YLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG----QQTVVQEESY 168
           Y+K    V+  +R +L     D       ADA  E +R+  ++W+     ++ ++ + S+
Sbjct: 74  YIKDTSAVISKVRSTLSMQKTD----PNVADAVAE-LREASNSWVAKYRKEKALLGKASF 133

Query: 169 AVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLDKAEESL 207
             +  A+ +++G Y   GP+AP+P   K+ +L +++ AE++L
Sbjct: 134 RDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 170

The following BLAST results are available for this feature:

BLAST of CcUC06G115640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875361.1	1.2e-93	88.83	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincas...	[more]
XP_023549108.1	2.2e-92	88.35	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbit...	[more]
XP_022958810.1	2.8e-92	88.35	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbit...	[more]
XP_022138383.1	6.3e-92	86.89	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordic...	[more]
XP_008447146.1	1.8e-91	87.38	PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplasti...	[more]

BLAST of CcUC06G115640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVZ9	9.9e-48	71.74	Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid...	[more]

BLAST of CcUC06G115640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H448	1.4e-92	88.35	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurb...	[more]
A0A6J1CCV0	3.1e-92	86.89	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Momord...	[more]
A0A1S3BG68	8.9e-92	87.38	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucumi...	[more]
A0A0A0K400	1.5e-91	87.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G234690 PE=3 SV=1	[more]
A0A6J1KWY8	2.6e-91	87.38	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurb...	[more]

BLAST of CcUC06G115640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05385.1	7.1e-49	71.74	photosystem II 11 kDa protein-related	[more]
AT1G03600.1	1.4e-04	25.49	photosystem II family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 44..206 e-value: 3.5E-48 score: 163.5
IPR025585	Photosystem II Pbs27	PANTHER	PTHR34041	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 26..206
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 80..206 score: 21.196545
IPR038450	Photosystem II Pbs27 superfamily	GENE3D	1.20.58.810	Photosystem II Pbs27	coord: 98..206 e-value: 6.2E-30 score: 105.8
None	No IPR available	PANTHER	PTHR34041:SF3	PHOTOSYSTEM II D1 PRECURSOR PROCESSING PROTEIN PSB27-H2, CHLOROPLASTIC	coord: 26..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G115640.1	CcUC06G115640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009523	photosystem II