CcUC06G115580 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G115580
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionAuxin-responsive GH3 family protein
LocationCicolChr06: 6972785 .. 6976708 (+)
RNA-Seq ExpressionCcUC06G115580
SyntenyCcUC06G115580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTGGACAGTCAACCAGCGGCTGCAGAGTGTCCGCCGCCCGCCCAAATCCAAACTCTCCGATGTCCATAAAGGTTCTGAAGTACCATTCGTTCGTCGGATCCATATACGGCACAAACGTCTCTGAAATGTGTCCTCTGTAAAGCACTCGTCTGAATTTCTTCTTTTCATCGTCGAAAATGGAGGCTGTCGAGATAATAATTCCGGCTCTGGCGTTGAATCCCACATGGAAGACCCAGTTTTCCCATTTCACTTGATGGCCTTCGATGGTAAATCTTCTTTTCGCCGCCTTGCAATTGGAAGATTTGGGCTCTGTTTTCTTTGATTGGTAATCGGTGCCTTCGGATTGCGGCAAAGGGGCGGTGAATCTGTCGGAGTAGTTGATGATTTTCATGGAATCAACGTCGATGAGTGTGATGATTCCTTCGATTGGCCTGGAGAACACATTGATGGTTCCTTCTCTGTAAAAGCACGCAACTTTTAGAAGCCTTTTGGTTGTTTTTTCGCCGTACCAGCCTACTGTAAACGGGATGCAAGAAACATGAGACAAGTTCAAGCCTCTCCTCTGAATGGAATCCTTGAATTTGGGGAAATTGAGAGGCAATTTGCTGGCTTGGACAAGCTCCACAAAAGTGAGAGGAGGATAGCCATGGCCACTATAGACTTGGTCAGACTTAACCGAGCGCGTGGCAAGGTCTACAAGTAGCTCGTGGGTGGAATCCGCCGCCCGGACCACAACCTTGGCATGGCGGGGCGGGCGGTGGAGGGGGTTGTTTTCTTCACCAGAAGAAAGCCAGGAAAGAACATCCTTCTTATCTGGTTCTTCCAAGTCAACGAAGTGAAATGTGAGATTTGGAAGCTTTCCAAGGTGGGATTTCTGTACTGCGAGCCTAATTTGGTCAAGCTCCACCGGGTTTAGAGGGTCAAGCGGATGGAAAAAGGGCAGCGCCGCCGTACAGAAATGAAGGTGAAGGACTACAAGAAGAAACAGAAGAAGAGTCATGGAGGAGGAGGGAAAATTCAAACAGCTTTTGGTCGATGGTTTACTGATCTTTCTCTTTATGATGAAACCGGCATGCTTCTTTATTGGATAATGGAGATGAAAATTCTACTTAAAGAAGCAAAAAGAAGAAGTCCACATTGGGAAGTCAAATGGTAATTAAGCTACCCCTAATATAAATGTTTATTCGATTGGAATGGCAGAAAGCTGGATGAGGAAGTCCAATTGCTTTTTGTTGTTTTCAAATGATGGAAACTTGGAACTTCTTCTCAAAGCATGATGTATGAAGAGGTCTTTTCTTGCATTGAGAGCAAGTGTCATTTGACTACCTCAAAGGAAAAGAAAGACATCTCATCTACACAAAATCCCTTTTAAAAAATTCTCAACTAACCTGTCCACTGAATCCCAGACAAAGTCAACTAAACATTGGATACCCAGGCAGAATTTTATTGGACACTTCAGAAACTTCAAAGGGACAAGTGAATTTGATATTCAGACAAAGCTTAATGAAGATGTGAACCAATAATCATTTGATCATGACACGACTCATGTAGCTTGTTAATCAAAAAATGTACTGATATGTTTCTATGTTATTTTAAAGCTTAGAAAAAAAAAAGAAGAGAAAGAAACAGATGGGTTTTTCCATTGAATAAGAATGAGTGTTGTTTATGAAGTGTATTCTTAAAGTACAATCTACGGAGTTTAATTATGGTTTCAAGTCAGAGCAATTGAACCAGTTGACTACCTAGGGTGGGGTGGGGTGACTTTAAGCACAGGATTGCTCTCAAAGAAATTGGTTGGTCTTAGCTCAAACCCACTGCTCAGAGTTGGCATTAATGGGAAGTCTTCTTGGCAAGGCACATGATGAAACCCCATGGTGTACCACATGACTATGTCCTTGTTCTCTATCTCCCTGTCCCTGCATTCATCATCCCATCCACGTATATTCTTGGTTAGAAAATCTCACTTTTCTTTTCATTTTAACAAATATAAATTAAAAATTTGTTCCCTATCTTGATACTTGTTTATTTAAAACTATAAGTTCTAATTTAAGTTGAGTTTTAATTTGGTTGAATCCTGTTCATGGTTCCTATCCAAAAATTTACTCATTTTCTCTTAAACCATAATACAATCAAGTAACGTAGTTTATCAAGTAGAAAAACACTACCTTGAACTGTAAGGTGAAATATGACAAAAATTAGTTCGACCAAATTGAAACATACAAAACCATAAGAATGAACTTCGAGGTAAGAGGTTCGTTTACCTCACCCCAAACTACAGGAATCAAACTCATAAATTATACATGTATTTTTGTCATGATAATCCACAAACATCCTAGAAACTAAAACACAAAGATTAAGGGTGCTTAGCTCTTTGTAAGGAAAAATTGTCTTTCGGGCTGACTTAAAAATTAAGAGTTATTCTATTATTCAATACAAACTTTTGTTTAATATACCAAGACGACTGTGTACCCCACTGGCTACGTATCACATGTTAAAGTCTACTAACCAAAGTACTAAACCTATATTTTTATATTGTATATAAAATCAATCACAGATCTACCATCCAAATACTGGCTAGAAGATGATTCACTTTACCTAATCACATGCATAAATCCTTTTCTTAAGCTAAGTACAACGCATAAGAATTAATTTAGATTCTGTTAATCAGACGGTTTACCTGAGACTCCAAGTAGCCAAGGTATCGTCTCCACGGCTCTGATCAGTGAAGAATCCAGAAGCCCATTTCTCGGAGCTATTATACGGTGTAACCCACACATTGTAATTGGAGAACGCTCCCCTAATTTGGGGGTAATCATCAGCACTCAAAAGAGGACCCGCCGCCGACTTCGGAATCAGACGGTAGCCGACGGGATTCCCCATTCTGGTCCTCCGATTGGGATTAACGACTGCCAATTCGGCCTCCTGGAGGCCGAATTTGATCCTCGCATCGGCCTCTGTTTTGACCGTCTCGGCGACGACCGTCCAATTGCTACGCCTAGGGGAATCCGGGTCAGGCGATCGGGCAGTGCGGAGGTTGGATTTGACGAAGGAGTTGGCGCCGCCGTCGATGTCGAGATCGAGATGGTAGACGAGGAAGTGATCATGGCGGACGCCGATCGTATTGTCGGCTAACAAAGGGCCGTAGACTTCCTCCTTTATTGGGTCATTGTGAGTGTACTTTGACGCCCTAACTTCTAGCAAACCAGTTAGCCCAACCTGTAACGAAGGGCAAAACAGGGAATTCACTTAACATTATATAAAAGTCATGGTTAAATTACGTCTTAAATTATATTTACTAAATCTAATTATAAAATTAAATTTTAACTTTCCCACCAATGTGAGTTAAGCTGATAAAATATATCTCTTAATGTTTGGCCCACCAATTTTAAATGTTGGTTAAGTTGAGTTAAAATATATTTAACCAACTCTCCCTTTTTTCAATGTTTTCAATAGTTCCATCATGGACGACTATCACTATCACACTCCAAGAACTAACTTGAGGCTTCCACAATTATCTCCAACGACAACTCTCGTCGTCAAACTCCAAAAAGTAAATTCACTTGTGGAATAGCTTCCACCGACCTTTATTACTTGTCATTATAGTGGTGTTGTGTATCAAGCCCCTTTTTTTTTCTTATCGTTTCCTTTTTTTTTTTTTCATTTTATTGATAATATATATATATTTTACAATCTCTTTTGTCTCTAAATTTATAGATTTCTTTTTTTTTTTATTTTCCTTTCTCATCTATACAATATCATTTACTTTCATTAATCAATTTGAAAGTTTAAAATGATAAGATGCGAGATATGTTCCATGACTTAAAAACCAACACCGGCTTCATAATAAATTTTATTCTTTTGTTTTATAATTCTTATTTTCGTTTCTCATCTATGTAATATATTTATTTTAAAGTAATGAAT

mRNA sequence

TTTCTGGACAGTCAACCAGCGGCTGCAGAGTGTCCGCCGCCCGCCCAAATCCAAACTCTCCGATGTCCATAAAGGTTCTGAAGTACCATTCGTTCGTCGGATCCATATACGGCACAAACCACTCGTCTGAATTTCTTCTTTTCATCGTCGAAAATGGAGGCTGTCGAGATAATAATTCCGGCTCTGGCGTTGAATCCCACATGGAAGACCCAGTTTTCCCATTTCACTTGATGGCCTTCGATGCCTACTGTAAACGGGATGCAAGAAACATGAGACAAGTTCAAGCCTCTCCTCTGAATGGAATCCTTGAATTTGGGGAAATTGAGAGGCAATTTGCTGGCTTGGACAAGCTCCACAAAAGTGAGAGGAGGATAGCCATGGCCACTATAGACTTGGTCAGACTTAACCGAGCGCGTGGCAAGCTCGTGGGTGGAATCCGCCGCCCGGACCACAACCTTGGCATGGCGGGGCGGGCGGTGGAGGGGGTTGTTTTCTTCACCAGAAGAAAGCCAGGAAAGAACATCCTTCTTATCTGGTTCTTCCAAGTCAACGAAGTGAAATGTGAGATTTGGAAGCTTTCCAAGGTGGGATTTCTGTACTGCGAGCCTAATTTGGTCAAGCTCCACCGGAGGGTCAAGCGGATGGAAAAAGGGCAGCGCCGCCGTACAGAAATGAAGGTGAAGGACTACAAGAAGAAACAGAAGAAGAGTCATGGAGGAGGAGGGAAAATTCAAACAGCTTTTGGTCGATGGTTTACTGATCTTTCTCTTTATGATGAAACCGGCATGCTTCTTTATTGGATAATGGAGATGAAAATTCTACTTAAAGAAGCAAAAAGAAGAAGTCCACATTGGGAAGTCAAATGGCACATGATGAAACCCCATGGTGTACCACATGACTATGTCCTTGTTCTCTATCTCCCTGTCCCTGCATTCATCATCCCATCCACGTATATTCTTGACGGTTTACCTGAGACTCCAAGTAGCCAAGGTATCGTCTCCACGGCTCTGATCAGTGAAGAATCCAGAAGCCCATTTCTCGGAGCTATTATACGGTGTAACCCACACATTGTAATTGGAGAACGCTCCCCTAATTTGGGGGTAATCATCAGCACTCAAAAGAGGACCCGCCGCCGACTTCGGAATCAGACGGTAGCCGACGGGATTCCCCATTCTGGTCCTCCGATTGGGATTAACGACTGCCAATTCGGCCTCCTGGAGGCCGAATTTGATCCTCGCATCGGCCTCTGTTTTGACCGTCTCGGCGACGACCGTCCAATTGCTACGCCTAGGGGAATCCGGGTCAGGCGATCGGGCAGTGCGGAGGTTGGATTTGACGAAGGAGTTGGCGCCGCCGTCGATGTCGAGATCGAGATGGTAGACGAGGAAGTGATCATGGCGGACGCCGATCGTATTGTCGGCTAACAAAGGGCCGTAGACTTCCTCCTTTATTGGGTCATTTTCCATCATGGACGACTATCACTATCACACTCCAAGAACTAACTTGAGGCTTCCACAATTATCTCCAACGACAACTCTCGTCGTCAAACTCCAAAAAGTAAATTCACTTGTGGAATAGCTTCCACCGACCTTTATTACTTGTCATTATAGTGGTGTTGTGTATCAAGCCCCTTTTTTTTTCTTATCGTTTCCTTTTTTTTTTTTTCATTTTATTGATAATATATATATATTTTACAATCTCTTTTGTCTCTAAATTTATAGATTTCTTTTTTTTTTTATTTTCCTTTCTCATCTATACAATATCATTTACTTTCATTAATCAATTTGAAAGTTTAAAATGATAAGATGCGAGATATGTTCCATGACTTAAAAACCAACACCGGCTTCATAATAAATTTTATTCTTTTGTTTTATAATTCTTATTTTCGTTTCTCATCTATGTAATATATTTATTTTAAAGTAATGAAT

Coding sequence (CDS)

ATGTCCATAAAGGTTCTGAAGTACCATTCGTTCGTCGGATCCATATACGGCACAAACCACTCGTCTGAATTTCTTCTTTTCATCGTCGAAAATGGAGGCTGTCGAGATAATAATTCCGGCTCTGGCGTTGAATCCCACATGGAAGACCCAGTTTTCCCATTTCACTTGATGGCCTTCGATGCCTACTGTAAACGGGATGCAAGAAACATGAGACAAGTTCAAGCCTCTCCTCTGAATGGAATCCTTGAATTTGGGGAAATTGAGAGGCAATTTGCTGGCTTGGACAAGCTCCACAAAAGTGAGAGGAGGATAGCCATGGCCACTATAGACTTGGTCAGACTTAACCGAGCGCGTGGCAAGCTCGTGGGTGGAATCCGCCGCCCGGACCACAACCTTGGCATGGCGGGGCGGGCGGTGGAGGGGGTTGTTTTCTTCACCAGAAGAAAGCCAGGAAAGAACATCCTTCTTATCTGGTTCTTCCAAGTCAACGAAGTGAAATGTGAGATTTGGAAGCTTTCCAAGGTGGGATTTCTGTACTGCGAGCCTAATTTGGTCAAGCTCCACCGGAGGGTCAAGCGGATGGAAAAAGGGCAGCGCCGCCGTACAGAAATGAAGGTGAAGGACTACAAGAAGAAACAGAAGAAGAGTCATGGAGGAGGAGGGAAAATTCAAACAGCTTTTGGTCGATGGTTTACTGATCTTTCTCTTTATGATGAAACCGGCATGCTTCTTTATTGGATAATGGAGATGAAAATTCTACTTAAAGAAGCAAAAAGAAGAAGTCCACATTGGGAAGTCAAATGGCACATGATGAAACCCCATGGTGTACCACATGACTATGTCCTTGTTCTCTATCTCCCTGTCCCTGCATTCATCATCCCATCCACGTATATTCTTGACGGTTTACCTGAGACTCCAAGTAGCCAAGGTATCGTCTCCACGGCTCTGATCAGTGAAGAATCCAGAAGCCCATTTCTCGGAGCTATTATACGGTGTAACCCACACATTGTAATTGGAGAACGCTCCCCTAATTTGGGGGTAATCATCAGCACTCAAAAGAGGACCCGCCGCCGACTTCGGAATCAGACGGTAGCCGACGGGATTCCCCATTCTGGTCCTCCGATTGGGATTAACGACTGCCAATTCGGCCTCCTGGAGGCCGAATTTGATCCTCGCATCGGCCTCTGTTTTGACCGTCTCGGCGACGACCGTCCAATTGCTACGCCTAGGGGAATCCGGGTCAGGCGATCGGGCAGTGCGGAGGTTGGATTTGACGAAGGAGTTGGCGCCGCCGTCGATGTCGAGATCGAGATGGTAGACGAGGAAGTGATCATGGCGGACGCCGATCGTATTGTCGGCTAA

Protein sequence

MSIKVLKYHSFVGSIYGTNHSSEFLLFIVENGGCRDNNSGSGVESHMEDPVFPFHLMAFDAYCKRDARNMRQVQASPLNGILEFGEIERQFAGLDKLHKSERRIAMATIDLVRLNRARGKLVGGIRRPDHNLGMAGRAVEGVVFFTRRKPGKNILLIWFFQVNEVKCEIWKLSKVGFLYCEPNLVKLHRRVKRMEKGQRRRTEMKVKDYKKKQKKSHGGGGKIQTAFGRWFTDLSLYDETGMLLYWIMEMKILLKEAKRRSPHWEVKWHMMKPHGVPHDYVLVLYLPVPAFIIPSTYILDGLPETPSSQGIVSTALISEESRSPFLGAIIRCNPHIVIGERSPNLGVIISTQKRTRRRLRNQTVADGIPHSGPPIGINDCQFGLLEAEFDPRIGLCFDRLGDDRPIATPRGIRVRRSGSAEVGFDEGVGAAVDVEIEMVDEEVIMADADRIVG
Homology
[Close]
BLAST of CcUC06G115580 vs. NCBI nr
Match: GER28006.1 (auxin-responsive GH3 family protein [Striga asiatica])

HSP 1 Score: 66.2 bits (160), Expect = 8.1e-07
Identity = 49/142 (34.51%), Postives = 71/142 (50.00%), Query Frame = 0 

Query: 271 MKPHGVPHDYVLVLYLPVPA--------FIIPSTYILDG--LPETPSSQGIVSTALISEE 330
           M+   VPHD +LVL L VPA        +I  S     G  LP  P  Q I++ AL+ E+
Sbjct: 1   MESQSVPHDDILVLNLSVPAKKKKEKKNYIFESIEQEHGIPLPVRPYFQSIITFALVREK 60

Query: 331 SRSPFLGAIIRCNPHIVIGERSPNLGVIISTQKRTRRRLRNQTVADGIPHSGPPIGINDC 390
             SP LG IIR +P++VIG+    L  I+  ++ +    R+  + D +P S     ++D 
Sbjct: 61  PASPLLGFIIRSDPNLVIGKSPSFLWRIVGVEQASSCASRDYFIPDRVPDSCFLPRVDDV 120

Query: 391 QFGL---------LEAEFDPRI 394
           +FG          LE +FD RI
Sbjct: 121 KFGRRFPGFCVLPLEVDFDKRI 142

[Close]
BLAST of CcUC06G115580 vs. ExPASy TrEMBL
Match: A0A5A7P6A5 (Auxin-responsive GH3 family protein OS=Striga asiatica OX=4170 GN=STAS_03776 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-07
Identity = 49/142 (34.51%), Postives = 71/142 (50.00%), Query Frame = 0 

Query: 271 MKPHGVPHDYVLVLYLPVPA--------FIIPSTYILDG--LPETPSSQGIVSTALISEE 330
           M+   VPHD +LVL L VPA        +I  S     G  LP  P  Q I++ AL+ E+
Sbjct: 1   MESQSVPHDDILVLNLSVPAKKKKEKKNYIFESIEQEHGIPLPVRPYFQSIITFALVREK 60

Query: 331 SRSPFLGAIIRCNPHIVIGERSPNLGVIISTQKRTRRRLRNQTVADGIPHSGPPIGINDC 390
             SP LG IIR +P++VIG+    L  I+  ++ +    R+  + D +P S     ++D 
Sbjct: 61  PASPLLGFIIRSDPNLVIGKSPSFLWRIVGVEQASSCASRDYFIPDRVPDSCFLPRVDDV 120

Query: 391 QFGL---------LEAEFDPRI 394
           +FG          LE +FD RI
Sbjct: 121 KFGRRFPGFCVLPLEVDFDKRI 142

The following BLAST results are available for this feature:
BLAST of CcUC06G115580 vs. NCBI nr
Match NameE-valueIdentityDescription
GER28006.18.1e-0734.51auxin-responsive GH3 family protein [Striga asiatica][more]
BLAST of CcUC06G115580 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC06G115580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7P6A53.9e-0734.51Auxin-responsive GH3 family protein OS=Striga asiatica OX=4170 GN=STAS_03776 PE=... [more]
BLAST of CcUC06G115580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..221

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G115580.1CcUC06G115580.1mRNA