CcUC06G115260 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G115260
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Aldose 1-epimerase
Location	CicolChr06: 6637382 .. 6637779 (+)
RNA-Seq Expression	CcUC06G115260
Synteny	CcUC06G115260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGTTAGGGTTGTTCAAGGAACACCCTGTGATTTTTTAACAACCCAAATCATTGGCAACAATATGAACAAATTACCAAATGGGTTCGATATCTACTACGTGCTTGATGGATTAAAGGGGACAGAAAAGTAAAAAGCTACTACTTTACGAGAGAAAAAGTCTGGACGAGTATTGAAATTGTAGACTATTGTCGAAGGATTACAATTTTACACAAGCAATGGGCTCACACATGTGATATGAAAGGGACAGTTTGTCTATGAAACTCATGTGGAACTTTGTTTGAAGACTCAAAGATTTCTTAATGTGGCGAACCATCCAAATTTTCCTTCACATATTGTTATGAAAGAAAACCCTAATGAACACTCAATGTTGTTTAAGTTTTCAACCAAATAA

mRNA sequence

ATGGGAAAGGTTGTTCAAGGAACACCCTGTGATTTTTTAACAACCCAAATCATTGGCAACAATATGAACAAATTACCAAATGGGTTCGATATCTACTACACTATTGTCGAAGGATTACAATTTTACACAAGCAATGGGCTCACACATTTTGTCTATGAAACTCATGTGGAACTTTGTTTGAAGACTCAAAGATTTCTTAATGTGGCGAACCATCCAAATTTTCCTTCACATATTGTTATGAAAGAAAACCCTAATGAACACTCAATGTTGTTTAAGTTTTCAACCAAATAA

Coding sequence (CDS)

ATGGGAAAGGTTGTTCAAGGAACACCCTGTGATTTTTTAACAACCCAAATCATTGGCAACAATATGAACAAATTACCAAATGGGTTCGATATCTACTACACTATTGTCGAAGGATTACAATTTTACACAAGCAATGGGCTCACACATTTTGTCTATGAAACTCATGTGGAACTTTGTTTGAAGACTCAAAGATTTCTTAATGTGGCGAACCATCCAAATTTTCCTTCACATATTGTTATGAAAGAAAACCCTAATGAACACTCAATGTTGTTTAAGTTTTCAACCAAATAA

Protein sequence

MGKVVQGTPCDFLTTQIIGNNMNKLPNGFDIYYTIVEGLQFYTSNGLTHFVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPNEHSMLFKFSTK

Homology

[Close]

BLAST of CcUC06G115260 vs. NCBI nr
Match: XP_038875522.1 (galactose mutarotase-like [Benincasa hispida])

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-27
Identity = 72/127 (56.69%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 3   KVVQGTPCDFLTTQIIGNNMNKLPNGFDIYY----------------------------T 62
           K VQGTP DFLT QIIGNNM+KLPNGFDIYY                            T
Sbjct: 231 KAVQGTPYDFLTPQIIGNNMSKLPNGFDIYYVLDGLKGTEKKKAATLRERKSGRVLELWT 290

Query: 63  IVEGLQFYTSNGLTH------FVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPNEHS 96
             EGLQFYT NGLT+      FVY+ H  LCL+TQ F +  NHPNFPS IV KENP EHS
Sbjct: 291 TAEGLQFYTGNGLTNVTGKGGFVYKAHAGLCLETQGFPDAVNHPNFPSEIVTKENPYEHS 350

[Close]

BLAST of CcUC06G115260 vs. NCBI nr
Match: KAG6575006.1 (Aldose 1-epimerase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-24
Identity = 67/126 (53.17%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 3   KVVQGTPCDFLTTQIIGNNMNKLPNGFDIYY----------------------------T 62
           + V GTP DFLT QI+GNNMNKL  GFDIYY                            T
Sbjct: 231 RAVNGTPYDFLTPQIVGNNMNKLGKGFDIYYVLDGMKGMEEKKAATLRERKSGRVMELWT 290

Query: 63  IVEGLQFYTSNGLTH------FVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPNEHS 95
             EGLQFYT NGL +      FVYE H  LCL+TQ F N  N PNFPSHIV KE P EHS
Sbjct: 291 TAEGLQFYTGNGLVNVTGKGGFVYEPHAGLCLETQGFPNAVNEPNFPSHIVTKETPYEHS 350

[Close]

BLAST of CcUC06G115260 vs. NCBI nr
Match: KGN46963.1 (hypothetical protein Csa_020978 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 4.5e-24
Identity = 66/126 (52.38%), Postives = 75/126 (59.52%), Query Frame = 0


Query: 5   VQGTPCDFLTTQIIGNNMNKLPNGFDIYY----------------------------TIV 64
           VQGTP DFLT +IIG+NM KLPNGFDIYY                            T  
Sbjct: 233 VQGTPYDFLTPKIIGDNMKKLPNGFDIYYVLDGLKGRENRKAATLRERKSGRVLELWTNA 292

Query: 65  EGLQFYTSNGLTH------FVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPNEHSML 97
           +GLQFYT N L +      FVYE H  LC++TQ F +  NHPNFPSHIV KE+P EHSML
Sbjct: 293 DGLQFYTGNWLRNLTGKGGFVYEAHAGLCMETQGFPDAVNHPNFPSHIVTKESPYEHSML 352

[Close]

BLAST of CcUC06G115260 vs. NCBI nr
Match: KAG7013577.1 (Aldose 1-epimerase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23
Identity = 66/126 (52.38%), Postives = 70/126 (55.56%), Query Frame = 0


Query: 3   KVVQGTPCDFLTTQIIGNNMNKLPNGFDIYY----------------------------T 62
           + V GTP DFLT  I+GNNMNKL  GFDIYY                            T
Sbjct: 231 RAVNGTPYDFLTPHIVGNNMNKLGKGFDIYYVLDGMKGMEEKKAATLRERKSGRVMELWT 290

Query: 63  IVEGLQFYTSNGLTH------FVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPNEHS 95
             EGLQFYT NGL +      FVYE H  LCL+TQ F N  N PNFPSHIV KE P EHS
Sbjct: 291 TAEGLQFYTGNGLVNVTGKGGFVYEPHAGLCLETQGFPNAVNEPNFPSHIVTKETPYEHS 350

[Close]

BLAST of CcUC06G115260 vs. NCBI nr
Match: KAF3444768.1 (hypothetical protein FNV43_RR14461 [Rhamnella rubrinervis])

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 58/131 (44.27%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 2   GKV--VQGTPCDFLTTQIIGNNMNKLPNGFDIYY-------------------------- 61
           GK+  V+GTP DFL   +IG+ M KL NG+DI Y                          
Sbjct: 228 GKIASVKGTPYDFLKPHVIGSKMKKLSNGYDINYVLDGGLGDKLKPAAVVYDKKSGRVLE 287

Query: 62  --TIVEGLQFYTSNGLTH------FVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPN 97
             T   G+QFYTSN L +      FVYE H  LCL+TQ F +  NHPNFPS IV    P 
Sbjct: 288 LSTDAPGVQFYTSNSLKNVKGKGGFVYEPHAALCLETQGFPDAVNHPNFPSTIVSPGKPY 347

[Close]

BLAST of CcUC06G115260 vs. ExPASy Swiss-Prot
Match: Q8K157 (Galactose mutarotase OS=Mus musculus OX=10090 GN=Galm PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.4e-04
Identity = 26/69 (37.68%), Postives = 33/69 (47.83%), Query Frame = 0


Query: 33  YTIVEGLQFYTSN-------GLTHFVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPN 92
           YT   G+QFYT N       G    VY  H  LCL+TQ + +  N P FP  ++      
Sbjct: 272 YTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGLCLETQNWPDSVNQPQFPPALLRPGEEY 331

Query: 93  EHSMLFKFS 95
            H+  FKFS
Sbjct: 332 NHTTWFKFS 340

[Close]

BLAST of CcUC06G115260 vs. ExPASy Swiss-Prot
Match: Q66HG4 (Galactose mutarotase OS=Rattus norvegicus OX=10116 GN=Galm PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.4e-04
Identity = 25/69 (36.23%), Postives = 33/69 (47.83%), Query Frame = 0


Query: 33  YTIVEGLQFYTSN-------GLTHFVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPN 92
           YT   G+QFYT N       G +  VY  H   CL+TQ + +  N P FP  ++      
Sbjct: 272 YTTQPGVQFYTGNFLDGTLKGKSGEVYPKHSGFCLETQNWPDAVNQPQFPPILLRPGEEY 331

Query: 93  EHSMLFKFS 95
            H+  FKFS
Sbjct: 332 NHTTWFKFS 340

[Close]

BLAST of CcUC06G115260 vs. ExPASy TrEMBL
Match: A0A0A0KBU6 (Aldose 1-epimerase OS=Cucumis sativus OX=3659 GN=Csa_6G153465 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 66/126 (52.38%), Postives = 75/126 (59.52%), Query Frame = 0


Query: 5   VQGTPCDFLTTQIIGNNMNKLPNGFDIYY----------------------------TIV 64
           VQGTP DFLT +IIG+NM KLPNGFDIYY                            T  
Sbjct: 233 VQGTPYDFLTPKIIGDNMKKLPNGFDIYYVLDGLKGRENRKAATLRERKSGRVLELWTNA 292

Query: 65  EGLQFYTSNGLTH------FVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPNEHSML 97
           +GLQFYT N L +      FVYE H  LC++TQ F +  NHPNFPSHIV KE+P EHSML
Sbjct: 293 DGLQFYTGNWLRNLTGKGGFVYEAHAGLCMETQGFPDAVNHPNFPSHIVTKESPYEHSML 352

[Close]

BLAST of CcUC06G115260 vs. ExPASy TrEMBL
Match: A0A314YNF9 (Aldose 1-epimerase OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_38643 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.8e-17
Identity = 55/126 (43.65%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 5   VQGTPCDFLTTQIIGNNMNKLPNGFDIYY----------------------------TIV 64
           V+GTP DFL  + +G+ +NKL +G+DI Y                            T  
Sbjct: 236 VKGTPYDFLKPKAVGSRINKLASGYDINYVLDGGAGNKLKPAAVVYDKKSGRVLELSTNA 295

Query: 65  EGLQFYTSNGLTH------FVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPNEHSML 97
            GLQFYTSN L        FVYE H  LCL+TQ F +  NHPNFPS IV  + P +H+ML
Sbjct: 296 PGLQFYTSNALKDVKGKGGFVYEPHAALCLETQGFPDAVNHPNFPSTIVTPKKPYKHNML 355

[Close]

BLAST of CcUC06G115260 vs. ExPASy TrEMBL
Match: A0A6P5SPZ8 (Aldose 1-epimerase OS=Prunus avium OX=42229 GN=LOC110760876 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.8e-17
Identity = 55/126 (43.65%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 5   VQGTPCDFLTTQIIGNNMNKLPNGFDIYY----------------------------TIV 64
           V+GTP DFL  + +G+ +NKL +G+DI Y                            T  
Sbjct: 236 VKGTPYDFLKPKAVGSRINKLASGYDINYVLDGGAGNKLKPAAVVYDKKSGRVLELSTNA 295

Query: 65  EGLQFYTSNGLTH------FVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPNEHSML 97
            GLQFYTSN L        FVYE H  LCL+TQ F +  NHPNFPS IV  + P +H+ML
Sbjct: 296 PGLQFYTSNSLKDVKGKGGFVYEPHAALCLETQGFPDAVNHPNFPSTIVTPKKPYKHNML 355

[Close]

BLAST of CcUC06G115260 vs. ExPASy TrEMBL
Match: A0A6J5X3F2 (Aldose 1-epimerase OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS23451 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.8e-17
Identity = 55/126 (43.65%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 5   VQGTPCDFLTTQIIGNNMNKLPNGFDIYY----------------------------TIV 64
           V+GTP DFL  + +G+ +NKL +G+DI Y                            T  
Sbjct: 236 VKGTPYDFLKPKAVGSRINKLASGYDINYVLDGGVGNKLKPAAVVYDKKSGRVLELSTNA 295

Query: 65  EGLQFYTSNGLTH------FVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPNEHSML 97
            GLQFYTSN L        FVYE H  LCL+TQ F +  NHPNFPS IV  + P +H+ML
Sbjct: 296 PGLQFYTSNSLKDVKGKGGFVYEPHAALCLETQGFPDAVNHPNFPSTIVTPKKPYKHNML 355

[Close]

BLAST of CcUC06G115260 vs. ExPASy TrEMBL
Match: A0A6J5UIN8 (Aldose 1-epimerase OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23834 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.8e-17
Identity = 55/126 (43.65%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 5   VQGTPCDFLTTQIIGNNMNKLPNGFDIYY----------------------------TIV 64
           V+GTP DFL  + +G+ +NKL +G+DI Y                            T  
Sbjct: 236 VKGTPYDFLKPKAVGSRINKLASGYDINYVLDGGAGNKLKPAAVVYDKKSGRVLELSTNA 295

Query: 65  EGLQFYTSNGLTH------FVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPNEHSML 97
            GLQFYTSN L        FVYE H  LCL+TQ F +  NHPNFPS IV  + P +H+ML
Sbjct: 296 PGLQFYTSNSLKDVKGKGGFVYEPHAALCLETQGFPDAVNHPNFPSTIVTPKKPYKHNML 355

[Close]

BLAST of CcUC06G115260 vs. TAIR 10
Match: AT3G47800.1 (Galactose mutarotase-like superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-12
Identity = 48/127 (37.80%), Postives = 61/127 (48.03%), Query Frame = 0


Query: 5   VQGTPCDFLTTQIIGNNMNKLPNGFDIYYTI----------------------------V 64
           + GTP DFL  + IG+ +++LP G+DI Y I                             
Sbjct: 233 ITGTPYDFLEPREIGSRIHELPGGYDINYVIDGPIGKHLRKTAVVTEQVTGRKMELWTNQ 292

Query: 65  EGLQFYTSN------GLTHFVYETHVELCLKTQRFLNVANHPNFPSHIVMKENPNE---H 95
            G+QFYTSN      G    VYE +  LCL+TQ F +  NH NFPS IV   NP E   H
Sbjct: 293 PGVQFYTSNMMKRVVGKGKAVYEKYGGLCLETQGFPDSVNHKNFPSQIV---NPGESYLH 352

The following BLAST results are available for this feature:

BLAST of CcUC06G115260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875522.1	2.5e-27	56.69	galactose mutarotase-like [Benincasa hispida]	[more]
KAG6575006.1	3.4e-24	53.17	Aldose 1-epimerase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KGN46963.1	4.5e-24	52.38	hypothetical protein Csa_020978 [Cucumis sativus]	[more]
KAG7013577.1	1.3e-23	52.38	Aldose 1-epimerase, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAF3444768.1	1.2e-16	44.27	hypothetical protein FNV43_RR14461 [Rhamnella rubrinervis]	[more]

BLAST of CcUC06G115260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K157	2.4e-04	37.68	Galactose mutarotase OS=Mus musculus OX=10090 GN=Galm PE=1 SV=1	[more]
Q66HG4	5.4e-04	36.23	Galactose mutarotase OS=Rattus norvegicus OX=10116 GN=Galm PE=1 SV=1	[more]

BLAST of CcUC06G115260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBU6	2.2e-24	52.38	Aldose 1-epimerase OS=Cucumis sativus OX=3659 GN=Csa_6G153465 PE=3 SV=1	[more]
A0A314YNF9	9.8e-17	43.65	Aldose 1-epimerase OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_38643 PE...	[more]
A0A6P5SPZ8	9.8e-17	43.65	Aldose 1-epimerase OS=Prunus avium OX=42229 GN=LOC110760876 PE=3 SV=1	[more]
A0A6J5X3F2	9.8e-17	43.65	Aldose 1-epimerase OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS23451 PE=3 SV=...	[more]
A0A6J5UIN8	9.8e-17	43.65	Aldose 1-epimerase OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23834 PE=3 SV=1	[more]

BLAST of CcUC06G115260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47800.1	2.5e-12	37.80	Galactose mutarotase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014718	Glycoside hydrolase-type carbohydrate-binding	GENE3D	2.70.98.10		coord: 2..96 e-value: 8.9E-12 score: 46.7
None	No IPR available	PANTHER	PTHR10091	ALDOSE-1-EPIMERASE	coord: 37..95
None	No IPR available	PANTHER	PTHR10091:SF38	ALDOSE 1-EPIMERASE FAMILY PROTEIN	coord: 4..35 coord: 37..95
None	No IPR available	PANTHER	PTHR10091	ALDOSE-1-EPIMERASE	coord: 4..35
IPR011013	Galactose mutarotase-like domain superfamily	SUPERFAMILY	74650	Galactose mutarotase-like	coord: 5..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G115260.1	CcUC06G115260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019318	hexose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0003824	catalytic activity