CcUC06G114040 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G114040
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description60S ribosomal protein L29
LocationCicolChr06: 5196059 .. 5197508 (+)
RNA-Seq ExpressionCcUC06G114040
SyntenyCcUC06G114040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCATACTAATATTTTTGAAGTCCATGTTTATAGGATCAATCTCTTGTCCTGTTTTCTTGTTTTATGTGATACATATGTTATTATAAGGAGTTGGTTTGAAACAAGGTTTTAAATGTATCGAAATATTGATAAATTGTCAAGGTAGATTGATATATTGTAAACAACAGTATATTTAAATTAACAAATTGTTTCACCTTTTTCTAAAAATATAAGTTTACATATTTGTCATAATATTAGATGTAATAGGCTATTTTTAAATATAGAAAAATAAATTAAAATATTTGCAAATATAGTAAAATTTTATGTTTATTTGTGATAAGGCAAGGGTCGAATACCTTCTCAACAACACTCTAAGCAAGAGCCAAACTGACGCTTCCGTACACAACCTTTACAAACTTGCTACTTAAGCTCATGGATTCAAGAGCCAAACTGACGCTTCCGTACACAACCTTTACAAACTTGCTACTTAAGCTCATGGATTATTAATCAATATGAGAATCTTTACAAACTCATTTTGCCCTTACAAGTTTTTTATAATTTCTATTTACCCTCATCACAACTATTTGGTATTACACACGAAGTAATGTATATTCTTTATGCACAAATGTGATCTAAACCATAAATACGAAACACTCACGATCTAACGCTAGAAGGAAACAACATGATATTATGTCGAAGAAATAACTTGAGATTTATTATCTTTTTTCCTTTTATCTTTTTTCCTCTTTGTACACTTTTGAAGGGTGAATAAGACAAAATATTTTTACCATTCAATCTAACTGGGTAATAGAGCTAATGGAGAGCTAAAGGTTAAATTGTTGATATAGTATTAAATTTACCTTCACCCGTCAACGTAAATTTTTGAGTCAATCCGAGATTTGTCTACGGCGTATCACCTCATACGCTAGTTGAAAAAATTGCATTTTAGAAAAATAGGGTGTGGAGATAGCCATCAGCTACAATTTCCCCTCCGGTTTCTCTTTAGAAGGAGTTGCGAGCCCAAAGACCAAGCCCATTTAGAATTCGAAGGCAAGCCCAAATCGAGTTGTCCATAACACCAAATTAGGTCAGAAACCCTAGCATTTCTTCAAATCCCTCTCTTCATATCGATATCTTCAAATCGCTCTCTTTTCTGTATTCGCTTTTTCGTTTAGAGATGGCGAAGTCGAGAATCACACAGCTCACAATCAGTCACGCAAAGCCCATAAGAACGGCATCAAGAAACCAATGAAGCACCGCCACTCTTCTACCAAAGGGGTATGTGTTTAACTCGAATAGTTACTTCTGTTCTTGTTCAATCCATTTTTTTTCCTTTTTTAATTGTTTTAATTATTTGCTTCGTCGATTTGTAGATTTGTGTTTAGATGGATCCAAAGTTCCTTAGGAATCAAAGGTACGCAAAGAAACACAATAACAAGAGTGGGGAAAATGCGTTTGAAGAAGAGTAA

mRNA sequence

ATTCATACTAATATTTTTGAAGTCCATGTTTATAGGATCAATCTCTTGTCCTGTTTTCTTGTTTTATGTGATACATATGTTATTATAAGGAGTTGGTTTGAAACAAGGTTTTAAATGTATCGAAATATTGATAAATTGTCAAGGTAGATTGATATATTGTAAACAACAGTATATTTAAATTAACAAATTGTTTCACCTTTTTCTAAAAATATAAGTTTACATATTTGTCATAATATTAGATGTAATAGGCTATTTTTAAATATAGAAAAATAAATTAAAATATTTGCAAATATAGTAAAATTTTATGTTTATTTGTGATAAGGCAAGGGTCGAATACCTTCTCAACAACACTCTAAGCAAGAGCCAAACTGACGCTTCCGTACACAACCTTTACAAACTTGCTACTTAAGCTCATGGATTCAAGAGCCAAACTGACGCTTCCGTACACAACCTTTACAAACTTGCTACTTAAGCTCATGGATTATTAATCAATATGAGAATCTTTACAAACTCATTTTGCCCTTACAAGTTTTTTATAATTTCTATTTACCCTCATCACAACTATTTGGTATTACACACGAAGTAATGTATATTCTTTATGCACAAATGTGATCTAAACCATAAATACGAAACACTCACGATCTAACGCTAGAAGGAAACAACATGATATTATGTCGAAGAAATAACTTGAGATTTATTATCTTTTTTCCTTTTATCTTTTTTCCTCTTTGTACACTTTTGAAGGGTGAATAAGACAAAATATTTTTACCATTCAATCTAACTGGGTAATAGAGCTAATGGAGAGCTAAAGGTTAAATTGTTGATATAGTATTAAATTTACCTTCACCCGTCAACGTAAATTTTTGAGTCAATCCGAGATTTGTCTACGGCGTATCACCTCATACGCTAGTTGAAAAAATTGCATTTTAGAAAAATAGGGTGTGGAGATAGCCATCAGCTACAATTTCCCCTCCGGTTTCTCTTTAGAAGGAGTTGCGAGCCCAAAGACCAAGCCCATTTAGAATTCGAAGGCAAGCCCAAATCGAGTTGTCCATAACACCAAATTAGGTCAGAAACCCTAGCATTTCTTCAAATCCCTCTCTTCATATCGATATCTTCAAATCGCTCTCTTTTCTGTATTCGCTTTTTCGTTTAGAGATGGCGAAGTCGAGAATCACACAGCTCACAATCAGTCACGCAAAGCCCATAAGAACGGCATCAAGAAACCAATGAAGCACCGCCACTCTTCTACCAAAGGGATGGATCCAAAGTTCCTTAGGAATCAAAGGTACGCAAAGAAACACAATAACAAGAGTGGGGAAAATGCGTTTGAAGAAGAGTAA

Coding sequence (CDS)

ATGAAGCACCGCCACTCTTCTACCAAAGGGATGGATCCAAAGTTCCTTAGGAATCAAAGGTACGCAAAGAAACACAATAACAAGAGTGGGGAAAATGCGTTTGAAGAAGAGTAA

Protein sequence

MKHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE
Homology
[Close]
BLAST of CcUC06G114040 vs. NCBI nr
Match: XP_038875270.1 (60S ribosomal protein L29-1 [Benincasa hispida])

HSP 1 Score: 70.1 bits (170), Expect = 4.6e-09
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          KHRH+STKGMDPKFLRNQRYAKKHNNKSGENA EEE
Sbjct: 26 KHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASEEE 61

[Close]
BLAST of CcUC06G114040 vs. NCBI nr
Match: XP_023000055.1 (60S ribosomal protein L29-1 [Cucurbita maxima] >XP_023514069.1 60S ribosomal protein L29-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          KHRH+STKGMDPKFLRNQRYAKKHNNKSGE A EEE
Sbjct: 26 KHRHTSTKGMDPKFLRNQRYAKKHNNKSGETASEEE 61

[Close]
BLAST of CcUC06G114040 vs. NCBI nr
Match: XP_038875325.1 (60S ribosomal protein L29-1-like [Benincasa hispida])

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          KHRH+STKGMDPKFLRNQRYAKKHNNKSGE A EEE
Sbjct: 26 KHRHTSTKGMDPKFLRNQRYAKKHNNKSGETASEEE 61

[Close]
BLAST of CcUC06G114040 vs. NCBI nr
Match: XP_008458371.1 (PREDICTED: 60S ribosomal protein L29-1-like [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 3.0e-08
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          KHRH+STKGMDPKFLRNQRYAKKHNNKSGENA  EE
Sbjct: 26 KHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGEE 61

[Close]
BLAST of CcUC06G114040 vs. NCBI nr
Match: PSR92521.1 (60S ribosomal protein like [Actinidia chinensis var. chinensis])

HSP 1 Score: 67.0 bits (162), Expect = 3.9e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          KHRH+STKGMDPKFLRNQRYA+KHNNKSGE+A EEE
Sbjct: 26 KHRHTSTKGMDPKFLRNQRYARKHNNKSGESATEEE 61

[Close]
BLAST of CcUC06G114040 vs. ExPASy Swiss-Prot
Match: Q84WM0 (60S ribosomal protein L29-2 OS=Arabidopsis thaliana OX=3702 GN=RPL29B PE=3 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-08
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          +HRH+ T+GMDPKFLRNQRYA+KHN KSGENA  EE
Sbjct: 26 RHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVEE 61

[Close]
BLAST of CcUC06G114040 vs. ExPASy Swiss-Prot
Match: Q9M7X7 (60S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-08
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          +HRH+ T+GMDPKFLRNQRYA+KHN K+GENA  EE
Sbjct: 26 RHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAEE 61

[Close]
BLAST of CcUC06G114040 vs. ExPASy TrEMBL
Match: A0A6J1KHA4 (60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494362 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          KHRH+STKGMDPKFLRNQRYAKKHNNKSGE A EEE
Sbjct: 26 KHRHTSTKGMDPKFLRNQRYAKKHNNKSGETASEEE 61

[Close]
BLAST of CcUC06G114040 vs. ExPASy TrEMBL
Match: A0A1S3C7P2 (60S ribosomal protein L29 OS=Cucumis melo OX=3656 GN=LOC103497798 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          KHRH+STKGMDPKFLRNQRYAKKHNNKSGENA  EE
Sbjct: 26 KHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGEE 61

[Close]
BLAST of CcUC06G114040 vs. ExPASy TrEMBL
Match: A0A2R6PJK9 (60S ribosomal protein L29 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc27140 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          KHRH+STKGMDPKFLRNQRYA+KHNNKSGE+A EEE
Sbjct: 26 KHRHTSTKGMDPKFLRNQRYARKHNNKSGESATEEE 61

[Close]
BLAST of CcUC06G114040 vs. ExPASy TrEMBL
Match: A0A6J1KET9 (60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494363 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-08
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          KHRH+STKGMDPKFLRNQRYAKKHNNKSGE+  EEE
Sbjct: 26 KHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEEE 61

[Close]
BLAST of CcUC06G114040 vs. ExPASy TrEMBL
Match: A0A2Z7ADI8 (60S ribosomal protein L29 OS=Dorcoceras hygrometricum OX=472368 GN=F511_20824 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-08
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          +HRHSSTKGMDPKFLRNQRYA+KHNNKSGE A EEE
Sbjct: 26 RHRHSSTKGMDPKFLRNQRYARKHNNKSGETASEEE 61

[Close]
BLAST of CcUC06G114040 vs. TAIR 10
Match: AT3G06680.1 (Ribosomal L29e protein family )

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-09
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          +HRH+ T+GMDPKFLRNQRYA+KHN KSGENA  EE
Sbjct: 48 RHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVEE 83

[Close]
BLAST of CcUC06G114040 vs. TAIR 10
Match: AT3G06680.2 (Ribosomal L29e protein family )

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-09
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          +HRH+ T+GMDPKFLRNQRYA+KHN KSGENA  EE
Sbjct: 26 RHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVEE 61

[Close]
BLAST of CcUC06G114040 vs. TAIR 10
Match: AT3G06680.3 (Ribosomal L29e protein family )

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-09
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          +HRH+ T+GMDPKFLRNQRYA+KHN KSGENA  EE
Sbjct: 26 RHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVEE 61

[Close]
BLAST of CcUC06G114040 vs. TAIR 10
Match: AT3G06700.1 (Ribosomal L29e protein family )

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-09
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          +HRH+ T+GMDPKFLRNQRYA+KHN K+GENA  EE
Sbjct: 26 RHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAEE 61

[Close]
BLAST of CcUC06G114040 vs. TAIR 10
Match: AT3G06700.2 (Ribosomal L29e protein family )

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-09
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 2  KHRHSSTKGMDPKFLRNQRYAKKHNNKSGENAFEEE 38
          +HRH+ T+GMDPKFLRNQRYA+KHN K+GENA  EE
Sbjct: 26 RHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAEE 61

The following BLAST results are available for this feature:
BLAST of CcUC06G114040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038875270.14.6e-0994.4460S ribosomal protein L29-1 [Benincasa hispida][more]
XP_023000055.12.3e-0891.6760S ribosomal protein L29-1 [Cucurbita maxima] >XP_023514069.1 60S ribosomal pro... [more]
XP_038875325.12.3e-0891.6760S ribosomal protein L29-1-like [Benincasa hispida][more]
XP_008458371.13.0e-0891.67PREDICTED: 60S ribosomal protein L29-1-like [Cucumis melo][more]
PSR92521.13.9e-0888.8960S ribosomal protein like [Actinidia chinensis var. chinensis][more]
BLAST of CcUC06G114040 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q84WM02.4e-0877.7860S ribosomal protein L29-2 OS=Arabidopsis thaliana OX=3702 GN=RPL29B PE=3 SV=2[more]
Q9M7X73.1e-0875.0060S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1[more]
BLAST of CcUC06G114040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KHA41.1e-0891.6760S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494362 PE=3 SV=1[more]
A0A1S3C7P21.4e-0891.6760S ribosomal protein L29 OS=Cucumis melo OX=3656 GN=LOC103497798 PE=3 SV=1[more]
A0A2R6PJK91.9e-0888.8960S ribosomal protein L29 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE... [more]
A0A6J1KET92.4e-0888.8960S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494363 PE=3 SV=1[more]
A0A2Z7ADI82.4e-0888.8960S ribosomal protein L29 OS=Dorcoceras hygrometricum OX=472368 GN=F511_20824 PE... [more]
BLAST of CcUC06G114040 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G06680.11.7e-0977.78Ribosomal L29e protein family [more]
AT3G06680.21.7e-0977.78Ribosomal L29e protein family [more]
AT3G06680.31.7e-0977.78Ribosomal L29e protein family [more]
AT3G06700.12.2e-0975.00Ribosomal L29e protein family [more]
AT3G06700.22.2e-0975.00Ribosomal L29e protein family [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.10.140.1730coord: 1..37
e-value: 1.2E-11
score: 46.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..37
NoneNo IPR availablePANTHERPTHR12884:SF3060S RIBOSOMAL PROTEIN L29coord: 2..37
IPR002673Ribosomal protein L29ePFAMPF01779Ribosomal_L29ecoord: 2..18
e-value: 4.7E-6
score: 26.8
IPR002673Ribosomal protein L29ePANTHERPTHR1288460S RIBOSOMAL PROTEIN L29coord: 2..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G114040.1CcUC06G114040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002181 cytoplasmic translation
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003735 structural constituent of ribosome