CcUC06G113440 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G113440
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationCicolChr06: 4461684 .. 4462003 (-)
RNA-Seq ExpressionCcUC06G113440
SyntenyCcUC06G113440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGTTTTTTGCTTTATAAGCAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCGCCGAGACATTCAATGGCGCACTCGAACTCAAATTCTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTGTATATTCTTGCAACAAACTTGAGTATAAACTCGTTTACATACCATACTTTTATGATAGCATGAGCAATCTCCATGGTCTACAAAAATTCGTAGAAAATGGGATTATTGTCTAGTTTATCATAACATTGCATGCTAG

mRNA sequence

ATGTTGAGTTTTTTGCTTTATAAGCAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCGCCGAGACATTCAATGGCGCACTCGAACTCAAATTCTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTCATGAGCAATCTCCATGGTCTACAAAAATTCGTAGAAAATGGGATTATTGTCTAGTTTATCATAACATTGCATGCTAG

Coding sequence (CDS)

ATGTTGAGTTTTTTGCTTTATAAGCAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCGCCGAGACATTCAATGGCGCACTCGAACTCAAATTCTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTCATGAGCAATCTCCATGGTCTACAAAAATTCGTAGAAAATGGGATTATTGTCTAGTTTATCATAACATTGCATGCTAG

Protein sequence

MLSFLLYKQLHDFVDAISVLAETFNGALELKFSQSRFSIMAATSPSSHCILALQLSPNFFAHEQSPWSTKIRRKWDYCLVYHNIAC
Homology
BLAST of CcUC06G113440 vs. NCBI nr
Match: XP_023548336.1 (uncharacterized protein LOC111807004 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-10
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 10 LHDFVDAISVLAETFNGALELKFSQSRFSIMAATSPSSHCILALQLSPNFF 61
          +HD VDA SVLAETF+   ++KFS + FSIMAAT+PSS CI+ALQLSP FF
Sbjct: 1  MHDLVDATSVLAETFDDIFDIKFSPTMFSIMAATTPSSRCIIALQLSPQFF 51

BLAST of CcUC06G113440 vs. NCBI nr
Match: XP_022958855.1 (uncharacterized protein LOC111460009 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-10
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 10 LHDFVDAISVLAETFNGALELKFSQSRFSIMAATSPSSHCILALQLSPNFF 61
          +HD VDA SVLAET++   ++KFS + FSIMAAT+PSSHCI+ LQLSP FF
Sbjct: 1  MHDLVDATSVLAETYDDIFDIKFSPTMFSIMAATTPSSHCIIELQLSPQFF 51

BLAST of CcUC06G113440 vs. NCBI nr
Match: XP_023006011.1 (uncharacterized protein LOC111498888 [Cucurbita maxima])

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 10 LHDFVDAISVLAETFNGALELKFSQSRFSIMAATSPSSHCILALQLSPNFF 61
          +HD VDA SVLAET++   ++KFS + FSIMAAT+PSS CI+ALQLSP FF
Sbjct: 1  MHDLVDATSVLAETYDDIFDIKFSPTMFSIMAATTPSSRCIIALQLSPQFF 51

BLAST of CcUC06G113440 vs. NCBI nr
Match: XP_008458680.1 (PREDICTED: uncharacterized protein LOC103498008 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 4  FLLYKQLHDFVDAISVLAETFNGALELKFSQSRFSIMAATSPSSHCILALQLSPNFF 61
          F    Q+H F++AISVL ET     +LKFS + FSIM A SPSS CI++LQLSP  F
Sbjct: 3  FFELPQIHGFLEAISVLTETSEDEFDLKFSPAIFSIMVAASPSSRCIISLQLSPQIF 59

BLAST of CcUC06G113440 vs. NCBI nr
Match: WP_217833378.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 53.9 bits (128), Expect = 7.9e-04
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 9  QLHDFVDAISVLAETFNGALELKFSQSRFSIMAATSPSSHCILALQLSPNFF 61
          ++H+FVDAIS+LA   +   +LKFS   FSIM   +PSS C +ALQL P FF
Sbjct: 4  EIHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFF 54

BLAST of CcUC06G113440 vs. ExPASy TrEMBL
Match: A0A6J1H4N0 (uncharacterized protein LOC111460009 OS=Cucurbita moschata OX=3662 GN=LOC111460009 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-10
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 10 LHDFVDAISVLAETFNGALELKFSQSRFSIMAATSPSSHCILALQLSPNFF 61
          +HD VDA SVLAET++   ++KFS + FSIMAAT+PSSHCI+ LQLSP FF
Sbjct: 1  MHDLVDATSVLAETYDDIFDIKFSPTMFSIMAATTPSSHCIIELQLSPQFF 51

BLAST of CcUC06G113440 vs. ExPASy TrEMBL
Match: A0A6J1KWL1 (uncharacterized protein LOC111498888 OS=Cucurbita maxima OX=3661 GN=LOC111498888 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 10 LHDFVDAISVLAETFNGALELKFSQSRFSIMAATSPSSHCILALQLSPNFF 61
          +HD VDA SVLAET++   ++KFS + FSIMAAT+PSS CI+ALQLSP FF
Sbjct: 1  MHDLVDATSVLAETYDDIFDIKFSPTMFSIMAATTPSSRCIIALQLSPQFF 51

BLAST of CcUC06G113440 vs. ExPASy TrEMBL
Match: A0A1S3C9N3 (uncharacterized protein LOC103498008 OS=Cucumis melo OX=3656 GN=LOC103498008 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.3e-07
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 4  FLLYKQLHDFVDAISVLAETFNGALELKFSQSRFSIMAATSPSSHCILALQLSPNFF 61
          F    Q+H F++AISVL ET     +LKFS + FSIM A SPSS CI++LQLSP  F
Sbjct: 3  FFELPQIHGFLEAISVLTETSEDEFDLKFSPAIFSIMVAASPSSRCIISLQLSPQIF 59

BLAST of CcUC06G113440 vs. ExPASy TrEMBL
Match: A0A5D3BU35 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00910 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.8e-04
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 1  MLSFLLYKQLHDFVDAISVLAETFNGALELKFSQSRFSIMAATSPSSHCILALQLSPNFF 60
          M  F+L +++H FVDA+SVLA        LKFS   FSIMA  +PS  C +ALQL P FF
Sbjct: 1  MFVFIL-EEIHSFVDAVSVLA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFF 60

Query: 61 AHEQSPWSTKIRRKWDY 78
            + S    ++   W Y
Sbjct: 61 NQQYS--CQQLHYSWIY 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023548336.19.6e-1068.63uncharacterized protein LOC111807004 [Cucurbita pepo subsp. pepo][more]
XP_022958855.19.6e-1066.67uncharacterized protein LOC111460009 [Cucurbita moschata][more]
XP_023006011.12.1e-0966.67uncharacterized protein LOC111498888 [Cucurbita maxima][more]
XP_008458680.11.3e-0656.14PREDICTED: uncharacterized protein LOC103498008 [Cucumis melo][more]
WP_217833378.17.9e-0453.85hypothetical protein, partial [Synechococcus sp. PCC 7002][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1H4N04.7e-1066.67uncharacterized protein LOC111460009 OS=Cucurbita moschata OX=3662 GN=LOC1114600... [more]
A0A6J1KWL11.0e-0966.67uncharacterized protein LOC111498888 OS=Cucurbita maxima OX=3661 GN=LOC111498888... [more]
A0A1S3C9N36.3e-0756.14uncharacterized protein LOC103498008 OS=Cucumis melo OX=3656 GN=LOC103498008 PE=... [more]
A0A5D3BU353.8e-0444.16LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G113440.1CcUC06G113440.1mRNA