CcUC06G113380 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G113380
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	CicolChr06: 4431813 .. 4432142 (+)
RNA-Seq Expression	CcUC06G113380
Synteny	CcUC06G113380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTATCAAGATTGACGACCTTGATCCTTTCTTGGATGCAACCACTCTATTCGCCGAAATTGTGAACGACGAAATCTGCCTGAAAATCTCACCGTCGACGTTCTCTATAATTTCTCGCTACCAGCACCCTCTTTTCTTTGCAATGATGATTATGCCGCCACCATTTTTCGCTGAGTATTCCGTTGATCGGAATCACAATTCAAAGATTTCCCTATCGGCCTTCCACAATGCTATGTTGGAAGGCCAAAGCTTTTGTTCTTCAATGAGCATCCATGTTCATGAACAAGAAAATAATATACACCTTATATTTGAGCCTTCAAGTTAG

mRNA sequence

ATGTTCTCTATCAAGATTGACGACCTTGATCCTTTCTTGGATGCAACCACTCTATTCGCCGAAATTGTGAACGACGAAATCTGCCTGAAAATCTCACCGTCGACGTTCTCTATAATTTCTCGCTACCAGCACCCTCTTTTCTTTGCAATGATGATTATGCCGCCACCATTTTTCGCTGAGTATTCCGTTGATCGGAATCACAATTCAAAGATTTCCCTATCGGCCTTCCACAATGCTATGTTGGAAGGCCAAAGCTTTTGTTCTTCAATGAGCATCCATGTTCATGAACAAGAAAATAATATACACCTTATATTTGAGCCTTCAAGTTAG

Coding sequence (CDS)

ATGTTCTCTATCAAGATTGACGACCTTGATCCTTTCTTGGATGCAACCACTCTATTCGCCGAAATTGTGAACGACGAAATCTGCCTGAAAATCTCACCGTCGACGTTCTCTATAATTTCTCGCTACCAGCACCCTCTTTTCTTTGCAATGATGATTATGCCGCCACCATTTTTCGCTGAGTATTCCGTTGATCGGAATCACAATTCAAAGATTTCCCTATCGGCCTTCCACAATGCTATGTTGGAAGGCCAAAGCTTTTGTTCTTCAATGAGCATCCATGTTCATGAACAAGAAAATAATATACACCTTATATTTGAGCCTTCAAGTTAG

Protein sequence

MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENNIHLIFEPSS

Homology

[Close]

BLAST of CcUC06G113380 vs. NCBI nr
Match: KGN61523.1 (hypothetical protein Csa_006491 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 3.5e-33
Identity = 76/108 (70.37%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MFSIK+D+LDPFLDAT+LF E +NDEICLK SPSTFS+I+RYQ P FFAM+ MP P F E
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENNIHLIFEPS 109
           YSVDRNH S+ISL  F NA+LEGQS+ SSMSIH+ E +N I   FEPS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSY-SSMSIHLREPQNTILFKFEPS 107

[Close]

BLAST of CcUC06G113380 vs. NCBI nr
Match: XP_031736681.1 (uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharacterized protein LOC116403863 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 5.3e-29
Identity = 69/109 (63.30%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MFSIKIDD+DPFLDAT LFAE+ +DEICLK  PST SII RY+ P+FF  M +P P F E
Sbjct: 1   MFSIKIDDIDPFLDATILFAELTHDEICLKFLPSTMSIIVRYECPIFFVTMSLPQPLFVE 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENNIHLIFEPSS 110
           YSVDRNH S+ISL +F++A+LE Q+F ++++IH+ E +N I L FEPSS
Sbjct: 61  YSVDRNHISRISLLSFYSALLECQTF-AALNIHLQEDQNKILLTFEPSS 108

[Close]

BLAST of CcUC06G113380 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_005027 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 4.9e-27
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MFSIKID LDP LDA +LF +IVND+ICLK S STFSII+RYQHP FFAM+ +P P FAE
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENNIHLIFEPS 109
           Y V R+H  ++SL + H A+  GQ++ SS+ IH+ E++N I L FEPS
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTY-SSLRIHLQEEQNIICLAFEPS 107

[Close]

BLAST of CcUC06G113380 vs. NCBI nr
Match: XP_031743987.1 (uncharacterized protein LOC116404759 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 51/110 (46.36%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MF +K+ + DP LDAT+ FA+I  D+  +K +PS F IIS ++ P F A + + P +F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENNIHLIFE-PSS 110
           +SVD +H+SK+SL +FH+A+L+G SF +SM+IH+ ++ N I L F+ PSS
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSF-ASMTIHLLDKTNQIILRFDTPSS 109

[Close]

BLAST of CcUC06G113380 vs. NCBI nr
Match: KAE8646596.1 (hypothetical protein Csa_004903, partial [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-16
Identity = 49/109 (44.95%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MF +K+ + DP LDAT+ FA+I  D+  +K +PS F IIS ++ P F A + + P +F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENNIHLIFEPSS 110
           +SVD +H+SK+SL +FH+A+L+G SF +SM+IH+ ++ N I L F+  S
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSF-ASMTIHLLDKTNQIILRFDTPS 108

[Close]

BLAST of CcUC06G113380 vs. ExPASy TrEMBL
Match: A0A0A0LIE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-33
Identity = 76/108 (70.37%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MFSIK+D+LDPFLDAT+LF E +NDEICLK SPSTFS+I+RYQ P FFAM+ MP P F E
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENNIHLIFEPS 109
           YSVDRNH S+ISL  F NA+LEGQS+ SSMSIH+ E +N I   FEPS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSY-SSMSIHLREPQNTILFKFEPS 107

[Close]

BLAST of CcUC06G113380 vs. ExPASy TrEMBL
Match: A0A0A0KB76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.4e-27
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MFSIKID LDP LDA +LF +IVND+ICLK S STFSII+RYQHP FFAM+ +P P FAE
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENNIHLIFEPS 109
           Y V R+H  ++SL + H A+  GQ++ SS+ IH+ E++N I L FEPS
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTY-SSLRIHLQEEQNIICLAFEPS 107

[Close]

BLAST of CcUC06G113380 vs. ExPASy TrEMBL
Match: A0A0A0K902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.5e-17
Identity = 51/110 (46.36%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MF +K+ + DP LDAT+ FA+I  D+  +K +PS F IIS ++ P F A + + P +F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENNIHLIFE-PSS 110
           +SVD +H+SK+SL +FH+A+L+G SF +SM+IH+ ++ N I L F+ PSS
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSF-ASMTIHLLDKTNQIILRFDTPSS 109

[Close]

BLAST of CcUC06G113380 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 49/110 (44.55%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MF +K+ + DP LDAT+  A+I  D   LK +PS F II+ ++ P F A + + P +F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENNIHLIFE-PSS 110
           +SVD +H+SK+SL +FH+A+L+G SF +SM+IH+ ++ N + L F+ PSS
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSF-ASMTIHLLDKTNQMILRFDTPSS 109

[Close]

BLAST of CcUC06G113380 vs. ExPASy TrEMBL
Match: A0A1S3CL88 (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 49/110 (44.55%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MF +K+ + DP LDAT+  A+I  D   LK +PS F II+ ++ P F A + + P +F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENNIHLIFE-PSS 110
           +SVD +H+SK+SL +FH+A+L+G SF +SM+IH+ ++ N + L F+ PSS
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSF-ASMTIHLLDKTNQMILRFDTPSS 109

The following BLAST results are available for this feature:

BLAST of CcUC06G113380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61523.1	3.5e-33	70.37	hypothetical protein Csa_006491 [Cucumis sativus]	[more]
XP_031736681.1	5.3e-29	63.30	uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharact...	[more]
KGN45637.1	4.9e-27	61.11	hypothetical protein Csa_005027 [Cucumis sativus]	[more]
XP_031743987.1	1.8e-16	46.36	uncharacterized protein LOC116404759 [Cucumis sativus]	[more]
KAE8646596.1	2.3e-16	44.95	hypothetical protein Csa_004903, partial [Cucumis sativus]	[more]

BLAST of CcUC06G113380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G113380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIE0	1.7e-33	70.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1	[more]
A0A0A0KB76	2.4e-27	61.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1	[more]
A0A0A0K902	8.5e-17	46.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1	[more]
A0A5D3DZ07	2.1e-15	44.55	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CL88	2.1e-15	44.55	uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=...	[more]

BLAST of CcUC06G113380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..109 e-value: 3.5E-9 score: 38.3
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G113380.1	CcUC06G113380.1	mRNA