CcUC06G111810 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G111810
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RGG repeats nuclear RNA binding protein A-like
Location	CicolChr06: 2619812 .. 2631371 (+)
RNA-Seq Expression	CcUC06G111810
Synteny	CcUC06G111810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAATTCATAAATAATAATAATTCTAATAATAATAAAGGTTGGAGGGAGGCAAATAAATTGAGGAATTTAGGTCAGTCGAGTTCTTTTGCTCTTACTCACATTAGTCACTTCCATTGCGGCTAGGGTTTTCTTTTTCCTCTTCTTCTTTCTACAGATCTCTTATTCTTTCTATTATTGTATTCATGGAGCTCTTGTTTAGATAGGTTTTCCGGTCGCCTTTCTCGGAGTGGAATTTCCTTTTTTTGAGGTATTATTTGGGCTTTTTGGTTTCGAGATTCTTTGGAAATGGCGACCGTTAATCCCTTTGATTTGTTGGGAGATGATGACGCCGAGGACCCCTCGCAGCTAATTGCGGCTAAGCAGGCGGCGGCAGTGACGGCGCCGCCGTCTAAGAAAGGCCCTGCTCAGACCAAACCGGTGCCTTCTGGGGCTCAGCAGAATAAGCCTGCTAGTCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGGTAAGATTCTTCGTTTCTAAATTTCTGGTTTCATTTTGAATATTTATGTTTTCTTTTTCTTATTGCTTTGTTTGATTGATTTTACATTTTACAGATATTGTTTATTGTTTCGTTTCTTGCTCTTTGGCCTTTTGCTCTAAAACTACGCAAGTGTGAAGGGTAGTAACTGTTTTTAATTCGGTCGAAGTATTAAAATTACCATTTTTCCGCGAAAGATTTGTAGGATGTTATAATTGGCTTCGTTATATCTGTGTTTGGCAGTTCAATTTTGGTAATTCGGATAATACCCAATGACTTGTTTGCTTAGGTACTATGATTGGAACATTAATGAGTTGAGAGTATCAATACCTTTTCTTTTGGCTGAAATCTGATGTCTGCAATGCAGTTGTGAATAAATAAATTGTATTTAAATGTGTCAAGGTTTAAATGAAATTTTGTTTTCTAACTACGATATGTTGTTTTTTTCACAATGATTATTAATAATTTGAATCTATCAATAACAGTTGATTTACCAAGTTGTATTTAAGATTGTTTATTGATTTGGGGTCTTCTTCGGGAACTGGGGAGCGTGCAATCAATTTTTCATTCTTATGTTAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATTTTTTCGTCCTGTTAGATTATAATTTACCAATCGATTATTCCTCTAACTGTCGGGTTCTTATGAGTTTACACTGGAATGAATTATCCATTGAGTAATTGAGACAATCTTTTTTTTACTTTGAGTAGTAAGAGAATCAAGGAATGAAGGCAGTCGTGGAGGTCGTGGTAGTGGACGAGGTGGAGGACGAGGATATGGGCGAGGTCGTGAGGGTGGTGGCTTCAATCGCGACTCTGTCAATAATGAGAATACTAATGCACCTGAAGATGGAGAGGGTGGAAAGACAACTGAAAGACGTGGATATGGTGGGCCTCGTGGTCGTGGTGGCCGTCGGGGTGGTTTCAATAATGGAGAGGCTGCTGATGGGGAACGCCCTCGTAGAGCATTTGAACGCCACAGTGGAACTGGACGTGGGTATGTGTCTGTTCTTTTAAAATTCATTGTACCCACTCCTGCTGTATTTTCTACACTGTTTTGACACTTCTCCTTATTTTATGCCTAGAAATGAATTTAAACGTGAAGGGGCTGGTCGTGGAAATTGGGGAAGGTCAACTGACGAAGTTGCAGAGTAAGTACATGCGAATACCTTCCATCTTCATGGATATCCTTTTCCTGGTATTATGTGCATACATGAGCTTTCTTCTCAATCTCTTTCTCATAGAAAGCCACCAGGTTGTCTCGAAAGACAAAATTCTATGATCATGAATGCTTTTCCCAATATGTGAAAGGCGCACTCAACCACCCAAAATATACAAGGAGCTTGGCTTGCCTCATTTTTCTTTTGAGGGAGGGGGTTGCATTTTTATGCTTGCGTTATTATCTCTTGTAGCCTAAAAAAATTCTGTTTTATATTTAGGGTAGCAGAGGAAGCTGTTAATGAAACTGAAAAGAATGTGGGTGACGAGAAGCCTATTCAAGAGGATGATACATCAGTTGTCAACACAGAGAACCCTGCTAAAGAACCAGAGGAAACAGAACCAGAAGACAAGGTTAGTATCTTCAGCTTTTAGTAAATTTATCTTAAATCTGGGGCCTCCCACTTGTCCTTGATTTTCTCGTGGTGGAAAAGCAACTTGTATTTTTACTTGCATGACAAGTTAAACAGGCTTTATTACTTTACTTTTAGTAGCATAAATTTGATACAGGTAGCAGTTGTAAATTTGGTTACATGTATTAGTCTGGTGGGCTTGGGTTGCGAACTCCAGTGTACTGTTTGACTTGATTTAGAATCTAATTTACTCTTTTTTTCCTGATGCAGGAAATGACTCTGGAGGAGTACGAAAAGTTGCTTGAGGATAAAAGGAAAGCCCTTTTAGCTCTAAAAACTGAGGAGAGGAAGGTGGATCCTAAAGAATTTGCATCCATGCAACAACTTTCAAGCAAGAAGGACAACAATGACATCTTTATTAAATTGGTATACTTACTTAATCCTCTTTTGTAGTTGATTATCTATGGCCTATGGGATCTGATGGCCCTCGGCCTCTTGGTACCTTAAATGAGGGCTCGGCAGTTTCATCTCATTTATTACTGCACTTGTAGGGATCTGAGAAGGATAAGCGAAAAGAAATTGCAGATAAGGAGGAAAGAGCTAAGAAGGTATTATTAGCTCATCTTCTTTAAAGATTTCTGCTCATTAGATTGTTTACCCAAAGTAGTGAGTCTTACTTTTAAGGCATAAAGTAGTGAGTTTTCTACTTTAGATAATGTGCAAGTTGGTTGTTTTAGCGAAAAATTTGTGTGTTTCTTCGGCACTCATCCATCTAACACACAAACCCATCACCAGCCACTAGTACTACCAAAAATTTTCTATAAAGTCAATTAATGCAGTGAGGCATACACCTTCCACGTTGCAATAGTGTGTAAGCATGGAGGAGCGTGCCTCTTGTTCAACATAGGTATAGGCCACTTCTTCTGTTCAAACGTAGTCTAACCTCACAACATAGGTATAGGCCACTTTCTTTCCTCGAGCCTTATGTTTTGAAAACCTTGATGTCCTGCCAGCACATAGGATGCTCTTTATTGGGTTTATTCGGAGCCTACCTAAAGAAATTGAATTGAATTACTTTTTCTTTAAGAATATCGTATCACATGTGGTTGAAATTTTGTACTGTTGATCTATTAGAGTCCGTAGAGGTAAGTTACTTGGTGAGCCTATACTCAGGCTGACCGGAAGCAATTGAATATGATAATGTTTTTCAATTTTTTAGAACCATTATTGGAGGAAAATAAGTTTATTATAAAATTGTGCTTTGAAGAACTTTGTTTGGCCTTTATCTTCCAATTTTCCTCATCTTCATAAGAAATGCTTACTTTAAATTGCAATGAAAGCATTCTTCAATTTGATTACACTAGATTTCTAAAGAATGAATTTAATTCGTTTAAGTACTATTTATTCCAGATGATAGAATTTGCTTCCAAATGCATTTTCATACAAAGATATGGTTCTAACTTCTAGTTAGGCCCATCAGAATGGAGGAGTTTTATTTTGCTTGCCCTACATCATTGTTTTAGCCCTTCATAACATAGATACGTTGGTGGAATATCATTTGTTTAACGGGTCTATGAAAATTAGGAATTAACTCCTGAAAGTTTGAAAACAGACCTTGTAAAAGGCTAAATGACTGATGTTTTCTTTTCCCTCCACTTGTTAGTCTTTGAGCATTAATGAGTTTTTGAGGCCTGCGGAAGGAGAGCGTCACTACGCCCCTGGTGGCCGAGGAAGGGGTCGTGGCCGTGGTTCAAGGGGAGGATATGGATACAGTGGCAGCTCGATGAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCGATCTTAGGTGCGAAGTGAATCTCTCTATAAATTTTCCCTTAGAAAACTGTGTTTTTGATCTGGGGCAGGAAATTGACTAGAATAATATAGTCTCTCCTGTATCAAAAATGATTTTTAAGTTTAATTTGTTTAGGTGTAAATTGTCAAAGTCTTGTATTTTTCCTTGTCCATTTTCCTTTGTGTGTTTTCAACTGTTAGTTTCAGACTGTTTGCCAGATCAAACTATATATTGCACTTTTTTTCCCTCAGCATTGTGTTTATTTCCCCATTCTGTTCAGCTGGCTAGGGAATTTTGTTTTTCATTTGTTGCTCTTCATGCTTCTGGGAAATTGGATTTGCTGTTTGTAGTTCTGGGAATCTTCTTCTGAAAGAGGTGTAAGAAAAGAAGGAAAAAAAAATTTAAGACCCATTTGATAACCATGTGTAAATGTTCGTGGGTTGAATTCACTCTATTGAAAAATTTACGGATGAAACAAAATATCGAATAGATCAAAATCAATAGAATTGATTAAATTGAGGGTGTGACATAATTTGATTCTTTGGATTTTAGGAAAATATCTAATAATTTATTGCACACAATCAAAAGTCTAGGGATTAAATTAAAATGGTTAATTTTTTGTTACATGGTCAATGTAAAATGTGTTTCAATTTTTTTTACTTCGAGTTCGAGAATTTGGACTAATAATCTTTGTTAGTTATGCTTGAATCGTTTCTCAATCGAGTTTCTGTTGGGTACTTTAGATAAACCTTTTTTTTTTTTTCTTTCTTACGGATTAGCATGAAGGTTATTCTTTATGTATTCTGAGAAAACCATTCATGTGGTGCTTCACTAGAAAAATAATTTTAGACATTTATGGAATGTCTTGTTGTATTTTAGAATGTCAAGTGAACTATCATTCTTCATCAAGAATAAGTTGATTAAAATATGGCAAGGGCAAGTGTCATTTTATACTTTTGTATGATTAAAACCCGTCAAGTTTCTCTACACATTTGACATTTTATAAATGTAAAAATAAGTGAGAATGAAGCATCAAGTGCATTAATATTTACTACGTATAATGCATCATGTCTACTATAACTTGACATTTATTATTAATCGAGTTGAATGTAAACTTGGCACATTGCTCGAAATTTTCCCTTGAAATAACGTAATTCTTGTTTTCCATTTAGACCTGTTAGTGTCTTTCTCTTTAAGTAAGGAATTTAGTTGTTATTTCTTTAAACCCAATCTTGAAAAACGAATGAAATTAACATTATGTTGCCAGCACTATTGCAGTAGTGGTGTCTCCCATTGCAAAATAGCTAGAGTCTTAGCGCCATATTCAATTCAATCACAAATTTGTTTTAAATCACTAGCGATTACATATTCTCTACATGGTGATGAGTGGGGCAGTGTCTATAACACATGCAGAATGCTATTTTTTATTCATCTTTTAGAATTGGGTTATTCAATATTAACACTATTGGAATTGAGTCGGTACAGAACATTCATTTTCATTAAAAATGTTTAAAAATGAAAAAAAATGAATTTTTTATTTTAAGTCATTCTAGATAGGTCTTTAATTTTTAAAAGTCAAACTAAATTAAACAATTATAATACAGCAAAATGAGTTAATTTATTTACAAATATAATAAAATATCATTAATAAAAAATAAAATTTTGCTATAACTTAAATTTTTTTTAATAATTTTGTCATTTAAAAAAATTACATATTTGTAAATCAAAAATAAATCTAAAAATTATAATATTGTGATGCCACACCACACGAGTGAGGATATAAAGAAACGGTGGAACAATGCAAATAAATTAAACTAAGCGTTTTATAGATTGAGTTGGCTCTTTCTTTGCACTTACACTCGCGTTAGTCACTCAGCCATTGCGGCTAGGGTTTTTTTTCTTTCCTCCCGGTTTCTATCACTTTACTATTCGTTTTTTCCTTTTCCTTTTACAGATCACCATCGCCTCTCATTCATAGATTCATGGAGTTCTTGTTGTTAAGGTAGGATTTCGTGGTCGCCTTTCGCGGAGTGCAATTTCTTTTCAGCTTTTCCGGTATTGGTTTGAAGATAGTTCGGAAATGGCGACCACAAATCCATTTGATTTGTTGGGAGATGACGACGCCGAGGACCCATCGCAGCTAATTGCCGCCAAGCATGCCGTGGCGGCGGCGCCTAAGAAAGGTTCTGATCATCCTCAGGCCAAACAGGCGGCTGTGGCAGCTAAATTGAACAAACCTGCTAATCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGGTTAGTGTCTTCTCTTTTTAATTGGAAGTTAATGATTTTCTAAATATCAGCGTTTGATTTTGATGATTGATCGTGTTGTTCTTTTTGCTTCGCTGTCTGGGTTGATTGGTTTTGCATTTCCTGATTTTGGTTGTAGTTTTGTTCTAGCTGATTGTCCGCTTGTTTGCATGGTTACGTTGTTTGGGCCTACTGAATTGTGCGAAGTCTCTCTTGGCGACGTTTTTTTTAATATATATATATATATATATAGACACACACGTATGAGTGAGTGATTTTGAATTCAGTCGAAATGCTATAAGCTATAATTACTTTCTGTAATAGTGTTGTATTAGGTAATAGCCGGTTGGGATGTAATGTGTATTCCACTATTCCCACAATCCAGGCCCTGCATTCCAGATTTATTTGTAATTCAGATAATATCCAATGACTTGTATGTTTGGAACATAAATGAAAGTAAATTATCAATACTTTGTTTTTGTTCTTTTTTTGTGGAAGAAATTTGAGTGTCAGCAATGGTGTTGTGATTTTTTAACGTACTAGTTTGTGAAATTTCTCTGTACACTGTTTAGTTAATTCTTTTCTTTTTTACTTATTATTCTATTTTCCTTTTGTCCATGGTAATCAAAAGAATTTGAATTATTTTGATAATTTAGGTACAAGTCTTTTATCAAGGAAGTGAGCTTTCATTGAGAAATATGAAAGAATGTACAAGGGCATACAAAAAACAAACCCTCCAAAAAGAGCCCCCAACCCCAATAATGAGTAAGGACCCAGACTAAGTTAGTAATCACAAAAAGCCTGATTAATGGATGTCCATAGCGAAGAGTTATAACCAACTCCCTATTGTTCCTCTTGAGCCAAGTACTTCAAAAAATGGCAAAAAAGCTAGCCTGCCAAGCTGCCACATAACTATTCCTTTATCACAAAAAGGAGGGTTCATAAGAACTTCCTCGGTCATCCCTAATATGAGCCAAAGCAAAGCCCAAAATTCTTAAAAAACAGTTCTAAAGGGGCTATCCAAAGTAAAATGGTTGAGGTTCTCCTCTTGCTTTTGGCATAGAACGCACCATTGCTGGTGCAACACTAAGATGAGTGTCTCGGTAGATGGTCCTGCATGCTCATTATCTCATGCAGAACTGATAGACAAAGAATTTTACTTATTTTTGAAACTTTAACCTTCTAGAGAGAGGAGAACGTGGGTGGCAGAGGCACCATGGGAGGGAGAAGTGGAGTAAAGAACAAGGATAAAGGAGGTACTAAAGGAACCCTCAAATGACTTGCCCAGAATATCCTATGCTACATGAAGAAATGTCAACCATTTTGCTAAAATAGCCTCGTTCCAGGTTGTCAATGCCTAAACCCTCCAGATCAACTAATTTCGACACAACCTCCCCCACCCTTATCCACTCCTTCCCACAAGAAGTTTCTTGTTAAGCTTTCGTTGTTCTTACTAATCGAGACCAACATACCAAGCATGGGAAGAAAGTAGATCAGGATCCAACTCATCACTAATTGGGTCAAAGTGCTTCCCCCTTAAAAAAAGGCCTTCCTCCGTGGTTTTTGAATTTCTCTACCACAGGGTCCCGAAAAAGCAAACTATTTGGATTTACCCCCAAGGGAAGTCCAAGGTAGGAACGGGGAAGCTTATTCACCTCACAACCAACCAAATAAACCCAAGAGGACAACTTAGAAGGCTCACAATTTAACCAATGATGGAGCTTTTCTCTCTATTAATTTTAAGGCTTGAGATAGATTCAAAAAATGACAAGAAACCATTAATGTTTGTAGGAATTATTCAATTGTTATATATATATATTTTGATGAGATCCACTTGGTATGATTTATGCACAAGCTGAATTGCAATGTTTTGGTTGGTTCTTGATCTGTGATCTTTTGCATTATTTTGAAAGGTCGTTGTTGTCAACATTTACCTTGAAGAGGAATTGATGTATTAGATTTCTTCATATGATTTAGTGGTGGTAAATTCCATGTTTTCTAAAGAGGTCATGTTTTCAAGGAACAGCAAATATTTGCATGTATATCCAGATGGTGGGATGTTGTACTGAACTGGTTGGTCTCTTTATTGCATTATTGTTTAATATTCCTGGTTCTTAATATAGAACTTGGAAGTCTGCAATCAATTTTTTATTCTATCTTAAGCGTAGCTTTGCCTTTTATCATATTGTCCATATTACGTTATAATTTATCAACAGCCTATTCCTTGTTCTATTGGGTTCTTATGAGTGTCCCACCCAATTGGTATGAAATATCCATTGGGTAACTGAAAGAGTGTTTTTTTTCTTTTTTTAATACTTTGAGTAGTAAGGGAAGCAAAGAATGAAGGTGGTCGTGGAGGTCGTGGTAGTGGGCGTGGTGGAGGTGGACGTGGATATGGGCGAGGGCGTGGCAATGGTGGCTTCAATCGTGAGTCTTCCAATAATGAGCACTCATTTAGTAGTAACCCTGAAGATGGAGAGACTGGAAGGACAACAGAAAGGCGTGGTGGATATGGTGGACCTCGTGGTCGTGGTGGCCGTCGTGGTGGTTTTAATAATGGAGATTCTGTTGATGGTGAACGCCCTCGTGGTGTATTTGAACGCCACAGTGGGACTGGCCGAGGGTGAGTGTTCATTTTTTTAAAAAAAATCAGTTTACACAATTATTCTGTATCTTCTGCTTTGTTTTGATATTTTCAGCATATTTTATGCCTTAGAAATGAATTCAAGCGTGAAGGGTCTGGGCGTGGAAACTGGGGAAGGTCAACTGACGAATTGCCTGAGTAAGTACATGTCTACGTTTTGGATGCTTCTGTATGTGGTTTGGTTTTCCTTTTCTTTTTTTCTCCTATAATGTTTGGCGCTGGGGTGGGGGGAGCTCAGGAGGCGGACATTACTGGAAGTTTTTATGCATGTTCAAATCTTGTATGCTGAGAGGCTAGTTTGTTTTGCATACAGGGTTGCAGAGGAAGTTAATGAATCTGAGAAGAAGTTAGGTGATGAGAAGCCCGTTCATGAGGATGATACTGCAGGTGTCAACATCGAGAGCTCTGCAAAAGAATCAGAGGAAAAAGAACCAGAAGACAAGGTGTGTGTCGTCAGGTTTTTTGGTAAACTTCACTTAAACCTGCAGCCTACCATTTCACTCGTCATTGGTTTTTCTTGTTGACTGAAAAGTAATTTGTAGTTTGGCTTGCTTCTCAAACAAATTATATGGCAGTAATAGCTGAAGTTGTAGTAATAGGCTTGTTGGGCTTCGATTATGAAGTTCACTCTATGTTCAACATGATTTTGAATCTACCTTGTACTCTTTCGTTTGCCCTGATACAGGAAATGACTCTGGAGGAGTATGAAAAATTGCTGGAGGAGAAAAGGAAGACCCTTCTGTCACTAAAAACTGAGGAGAGGAAGGTGGATCCTAAAGAGTTTGCATCCTTGCAACAGCTTTCGAGCAAAAAGGAAAACCAGGATGTCTTTATTAAATTGGTACACCATTTAATCTTCTTTTGGAGTTTAAATTGTATATTGCTCTGATGACCCTTGGCTCCTTAGTATATTGGTGTACGGACTTGGACTTGGACTTGGACTTGGCCGCTTAATCTTCATTTGTTCCGTTTGTAGGGATCTGATAAGGATAAGCGAAAAGAAACTGCAGATAAGGAGGAGAGAACTAAGAAGGTATTTCCTCTTGTTTATTACTTGGTTTCTTGCCCACTACGTTGTTTTCTAAAGTTCCGTTCTTAACTGTGGGAAAATGTTCTGTTGTGATGCCTTTTACTGCGTCTATTTGTAACCAATTGAATGAAGAAATCGAAATGTGTTTACTGTATATAATTTACTTGTATTATGTCTGCGGACGCTCTCTCCTATTTGGAACAAAGCTTAAAAGAGAGAGAGGTTGGGGCATCGGTTCAACTTGTTAACTTAGGTTTAATTAGTGAAGTTTGTGTTAGGAAAACTGGGTGTTGGGGGTTCGAATGGGTTACTATTCTCATGCCAGTCGGGTTCTTCAGGAAAACTTGGGCTTGGCGATTGCTCCCCAATATGTGGGTTAGAAAGCCAAACTCACACCCCCAAATGCTTCAAGGGTGCTTGGCCAAAGAGTTGGAGAGTAGGATTTGAGGGGAGGGGAGTTCACAATTCCACTCCTTGTTTGGCGAAGGAGTTGGTGAGTCTCACTACTATAAAAAGTCAATTTTATACCTTATTAACTCCTTAAATGTTTAAGAATTCACAACTCCACTCCGTGTCCTGAACGTCTCCCAAACATTTAAGAACATGAGTTAAGAAATGTGTTTGTTTTTTTAAGGTTTTTTGCACAACTTGGTTCTAATAAAATAATATTTCCTTTATTGTAACCTAAATTCTATGCATACTAAATAGACTAATGTTTTCCATATCTTAGAAGAACTAGACCCTATGAGTTGACAAAGTACTGGTCTTTCTGTTGCTTTCTTCTGTTTTTGTAGTCTTTGAGTATCAATGAGTTCTTGAAGCCAGCCGAAGGAGAGAGACACTACACTCCAGGCGGTCGGGGTAGGGGCAGGGGCCGTGGTTCAAGGGGAGGTTTTGTTGGCAGCTTGGTGAGCAGCAATGTTGCAGCCCCGTCGATTGAGGATCCGGGGCAGTTCCCAACCTTAGGTGCGAAATGAAATTCTGAATAAATTGCACTCAAAACTGTGCCATATGGTTTTGGGGGCTCTCTCTTTTATGTGGGGCAGGGCAGGGAAAGAAGTTGACTAGAATAATAGAGTTTTTGCTCCCCTGTATAAAGAAGAGTTGCAAAGTTTATTTGTTTGAATGTAAATTGTCAAAGCTATGTATTTTTCCTTCTCACGCTTTTCCATTATGTGTTTTTCAACTGTTGCTTCAGACTTGGCAGATCCAACTATTTATTTTATGACATTGTAGCTTATACCATATTCTTCTCTGTTTCCAAATTTGGATTTGTTCATTGCAAATGTTTAG

mRNA sequence

AACAAATTCATAAATAATAATAATTCTAATAATAATAAAGGTTGGAGGGAGGCAAATAAATTGAGGAATTTAGGTCAGTCGAGTTCTTTTGCTCTTACTCACATTAGTCACTTCCATTGCGGCTAGGGTTTTCTTTTTCCTCTTCTTCTTTCTACAGATCTCTTATTCTTTCTATTATTGTATTCATGGAGCTCTTGTTTAGATAGGTTTTCCGGTCGCCTTTCTCGGAGTGGAATTTCCTTTTTTTGAGGTATTATTTGGGCTTTTTGGTTTCGAGATTCTTTGGAAATGGCGACCGTTAATCCCTTTGATTTGTTGGGAGATGATGACGCCGAGGACCCCTCGCAGCTAATTGCGGCTAAGCAGGCGGCGGCAGTGACGGCGCCGCCGTCTAAGAAAGGCCCTGCTCAGACCAAACCGGTGCCTTCTGGGGCTCAGCAGAATAAGCCTGCTAGTCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGTAAGAGAATCAAGGAATGAAGGCAGTCGTGGAGGTCGTGGTAGTGGACGAGGTGGAGGACGAGGATATGGGCGAGGTCGTGAGGGTGGTGGCTTCAATCGCGACTCTGTCAATAATGAGAATACTAATGCACCTGAAGATGGAGAGGGTGGAAAGACAACTGAAAGACGTGGATATGGTGGGCCTCGTGGTCGTGGTGGCCGTCGGGGTGGTTTCAATAATGGAGAGGCTGCTGATGGGGAACGCCCTCGTAGAGCATTTGAACGCCACAGTGGAACTGGACGTGGAAATGAATTTAAACGTGAAGGGGCTGGTCGTGGAAATTGGGGAAGGTCAACTGACGAAGTTGCAGAGGTAGCAGAGGAAGCTGTTAATGAAACTGAAAAGAATGTGGGTGACGAGAAGCCTATTCAAGAGGATGATACATCAGTTGTCAACACAGAGAACCCTGCTAAAGAACCAGAGGAAACAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTACGAAAAGTTGCTTGAGGATAAAAGGAAAGCCCTTTTAGCTCTAAAAACTGAGGAGAGGAAGGTGGATCCTAAAGAATTTGCATCCATGCAACAACTTTCAAGCAAGAAGGACAACAATGACATCTTTATTAAATTGGGATCTGAGAAGGATAAGCGAAAAGAAATTGCAGATAAGGAGGAAAGAGCTAAGAAGTCTTTGAGCATTAATGAGTTTTTGAGGCCTGCGGAAGGAGAGCGTCACTACGCCCCTGGTGGCCGAGGAAGGGGTCGTGGCCGTGGTTCAAGGGGAGGATATGGATACAGTGGCAGCTCGATGAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCGATCTTAGGATTTCGTGGTCGCCTTTCGCGGAGTGCAATTTCTTTTCAGCTTTTCCGGTATTGGTTTGAAGATAGTTCGGAAATGGCGACCACAAATCCATTTGATTTGTTGGGAGATGACGACGCCGAGGACCCATCGCAGCTAATTGCCGCCAAGCATGCCGTGGCGGCGGCGCCTAAGAAAGGTTCTGATCATCCTCAGGCCAAACAGGCGGCTGTGGCAGCTAAATTGAACAAACCTGCTAATCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGTAAGGGAAGCAAAGAATGAAGGTGGTCGTGGAGGTCGTGGTAGTGGGCGTGGTGGAGGTGGACGTGGATATGGGCGAGGGCGTGGCAATGGTGGCTTCAATCGTGAGTCTTCCAATAATGAGCACTCATTTAGTAGTAACCCTGAAGATGGAGAGACTGGAAGGACAACAGAAAGGCGTGGTGGATATGGTGGACCTCGTGGTCGTGGTGGCCGTCGTGGTGGTTTTAATAATGGAGATTCTGTTGATGGTGAACGCCCTCGTGGTGTATTTGAACGCCACAGTGGGACTGGCCGAGGCATATTTTATGCCTTAGAAATGAATTCAAGCGTGAAGGGTCTGGGCGTGGAAACTGGGGAAGGTCAACTGACGAATTGCCTGAGTAAGTACATGTCTACGTTTTGGATGCTTCTGGTTGCAGAGGAAGTTAATGAATCTGAGAAGAAGTTAGGTGATGAGAAGCCCGTTCATGAGGATGATACTGCAGGTGTCAACATCGAGAGCTCTGCAAAAGAATCAGAGGAAAAAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTATGAAAAATTGCTGGAGGAGAAAAGGAAGACCCTTCTGTCACTAAAAACTGAGGAGAGGAAGGTGGATCCTAAAGAGTTTGCATCCTTGCAACAGCTTTCGAGCAAAAAGGAAAACCAGGATGTCTTTATTAAATTGGGATCTGATAAGGATAAGCGAAAAGAAACTGCAGATAAGGAGGAGAGAACTAAGAAGTCTTTGAGTATCAATGAGTTCTTGAAGCCAGCCGAAGGAGAGAGACACTACACTCCAGGCGGTCGGGGTAGGGGCAGGGGCCGTGGTTCAAGGGGAGGTTTTGTTGGCAGCTTGGTGAGCAGCAATGTTGCAGCCCCGTCGATTGAGGATCCGGGGCAGTTCCCAACCTTAGGTGCGAAATGAAATTCTGAATAAATTGCACTCAAAACTGTGCCATATGGTTTTGGGGGCTCTCTCTTTTATGTGGGGCAGGGCAGGGAAAGAAGTTGACTAGAATAATAGAGTTTTTGCTCCCCTGTATAAAGAAGAGTTGCAAAGTTTATTTGTTTGAATGTAAATTGTCAAAGCTATGTATTTTTCCTTCTCACGCTTTTCCATTATGTGTTTTTCAACTGTTGCTTCAGACTTGGCAGATCCAACTATTTATTTTATGACATTGTAGCTTATACCATATTCTTCTCTGTTTCCAAATTTGGATTTGTTCATTGCAAATGTTTAG

Coding sequence (CDS)

ATGGCGACCGTTAATCCCTTTGATTTGTTGGGAGATGATGACGCCGAGGACCCCTCGCAGCTAATTGCGGCTAAGCAGGCGGCGGCAGTGACGGCGCCGCCGTCTAAGAAAGGCCCTGCTCAGACCAAACCGGTGCCTTCTGGGGCTCAGCAGAATAAGCCTGCTAGTCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGTAAGAGAATCAAGGAATGAAGGCAGTCGTGGAGGTCGTGGTAGTGGACGAGGTGGAGGACGAGGATATGGGCGAGGTCGTGAGGGTGGTGGCTTCAATCGCGACTCTGTCAATAATGAGAATACTAATGCACCTGAAGATGGAGAGGGTGGAAAGACAACTGAAAGACGTGGATATGGTGGGCCTCGTGGTCGTGGTGGCCGTCGGGGTGGTTTCAATAATGGAGAGGCTGCTGATGGGGAACGCCCTCGTAGAGCATTTGAACGCCACAGTGGAACTGGACGTGGAAATGAATTTAAACGTGAAGGGGCTGGTCGTGGAAATTGGGGAAGGTCAACTGACGAAGTTGCAGAGGTAGCAGAGGAAGCTGTTAATGAAACTGAAAAGAATGTGGGTGACGAGAAGCCTATTCAAGAGGATGATACATCAGTTGTCAACACAGAGAACCCTGCTAAAGAACCAGAGGAAACAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTACGAAAAGTTGCTTGAGGATAAAAGGAAAGCCCTTTTAGCTCTAAAAACTGAGGAGAGGAAGGTGGATCCTAAAGAATTTGCATCCATGCAACAACTTTCAAGCAAGAAGGACAACAATGACATCTTTATTAAATTGGGATCTGAGAAGGATAAGCGAAAAGAAATTGCAGATAAGGAGGAAAGAGCTAAGAAGTCTTTGAGCATTAATGAGTTTTTGAGGCCTGCGGAAGGAGAGCGTCACTACGCCCCTGGTGGCCGAGGAAGGGGTCGTGGCCGTGGTTCAAGGGGAGGATATGGATACAGTGGCAGCTCGATGAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCGATCTTAGGATTTCGTGGTCGCCTTTCGCGGAGTGCAATTTCTTTTCAGCTTTTCCGGTATTGGTTTGAAGATAGTTCGGAAATGGCGACCACAAATCCATTTGATTTGTTGGGAGATGACGACGCCGAGGACCCATCGCAGCTAATTGCCGCCAAGCATGCCGTGGCGGCGGCGCCTAAGAAAGGTTCTGATCATCCTCAGGCCAAACAGGCGGCTGTGGCAGCTAAATTGAACAAACCTGCTAATCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGTAAGGGAAGCAAAGAATGAAGGTGGTCGTGGAGGTCGTGGTAGTGGGCGTGGTGGAGGTGGACGTGGATATGGGCGAGGGCGTGGCAATGGTGGCTTCAATCGTGAGTCTTCCAATAATGAGCACTCATTTAGTAGTAACCCTGAAGATGGAGAGACTGGAAGGACAACAGAAAGGCGTGGTGGATATGGTGGACCTCGTGGTCGTGGTGGCCGTCGTGGTGGTTTTAATAATGGAGATTCTGTTGATGGTGAACGCCCTCGTGGTGTATTTGAACGCCACAGTGGGACTGGCCGAGGCATATTTTATGCCTTAGAAATGAATTCAAGCGTGAAGGGTCTGGGCGTGGAAACTGGGGAAGGTCAACTGACGAATTGCCTGAGTAAGTACATGTCTACGTTTTGGATGCTTCTGGTTGCAGAGGAAGTTAATGAATCTGAGAAGAAGTTAGGTGATGAGAAGCCCGTTCATGAGGATGATACTGCAGGTGTCAACATCGAGAGCTCTGCAAAAGAATCAGAGGAAAAAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTATGAAAAATTGCTGGAGGAGAAAAGGAAGACCCTTCTGTCACTAAAAACTGAGGAGAGGAAGGTGGATCCTAAAGAGTTTGCATCCTTGCAACAGCTTTCGAGCAAAAAGGAAAACCAGGATGTCTTTATTAAATTGGGATCTGATAAGGATAAGCGAAAAGAAACTGCAGATAAGGAGGAGAGAACTAAGAAGTCTTTGAGTATCAATGAGTTCTTGAAGCCAGCCGAAGGAGAGAGACACTACACTCCAGGCGGTCGGGGTAGGGGCAGGGGCCGTGGTTCAAGGGGAGGTTTTGTTGGCAGCTTGGTGAGCAGCAATGTTGCAGCCCCGTCGATTGAGGATCCGGGGCAGTTCCCAACCTTAGGTGCGAAATGA

Protein sequence

MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSKPLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNNENTNAPEDGEGGKTTERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTGRGNEFKREGAGRGNWGRSTDEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEERAKKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYGYSGSSMSNVAAPSIEDPGQFPILGFRGRLSRSAISFQLFRYWFEDSSEMATTNPFDLLGDDDAEDPSQLIAAKHAVAAAPKKGSDHPQAKQAAVAAKLNKPANLPSKPLPPAQAVREAKNEGGRGGRGSGRGGGGRGYGRGRGNGGFNRESSNNEHSFSSNPEDGETGRTTERRGGYGGPRGRGGRRGGFNNGDSVDGERPRGVFERHSGTGRGIFYALEMNSSVKGLGVETGEGQLTNCLSKYMSTFWMLLVAEEVNESEKKLGDEKPVHEDDTAGVNIESSAKESEEKEPEDKEMTLEEYEKLLEEKRKTLLSLKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEERTKKSLSINEFLKPAEGERHYTPGGRGRGRGRGSRGGFVGSLVSSNVAAPSIEDPGQFPTLGAK

Homology

[Close]

BLAST of CcUC06G111810 vs. NCBI nr
Match: KAG7011066.1 (RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1122.8 bits (2903), Expect = 0.0e+00
Identity = 644/791 (81.42%), Postives = 678/791 (85.71%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           MATVNPFDLLGDDDAEDPSQLIAAKQ AAVTAPP KKG AQTKPV S +QQNKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKQVAAVTAPPPKKGSAQTKPVVSPSQQNKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNNENTNAPEDGEGGKT 120
           PLPP+QAVRE+RNEGSRGGRGSGRGGGRGYGRGREGGGFNRD  N+ENT+APEDGE GKT
Sbjct: 61  PLPPSQAVREARNEGSRGGRGSGRGGGRGYGRGREGGGFNRDFANSENTSAPEDGEAGKT 120

Query: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTGRGNEFKREGAGRGNWGRST 180
           TERRGYGGPRGRGGRRGGFNNGEA DGERPRR FERHSGTGRGNE+KREGAGRGNWGR  
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAGDGERPRRVFERHSGTGRGNEYKREGAGRGNWGRPA 180

Query: 181 DEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEMTLEEYEKLL 240
           DE AEVAEEAVNE EKNVGDEKP+QE+DTS VN ENPAKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 DEFAEVAEEAVNEPEKNVGDEKPVQEEDTSGVNRENPAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEERAKK 300
           EDKRKAL+ALKTEERKVDPKEFASMQQLSSKK+NNDIFIKLGSEKDKRKEIADKEER KK
Sbjct: 241 EDKRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYGYSGSSMSNVAAPSIEDPGQFPI--- 360
           SLSINEFLRPAEGERHY PGGRGRGRGRGSRGGYG  GSS+SNVAAPSIEDPGQFP    
Sbjct: 301 SLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYG--GSSISNVAAPSIEDPGQFPTLGA 360

Query: 361 --------------------------LGFRGRLSRSAISFQLFRYWFEDSSEMATTNPFD 420
                                     LGFRGRLSRSAI FQLFRYWF+ SSEMATTNPFD
Sbjct: 361 KKLTRITVVSPIPFVSRSEIHGVLVKLGFRGRLSRSAIPFQLFRYWFQHSSEMATTNPFD 420

Query: 421 LLGDDDAEDPSQLIAAKHAVAAAPKKGSDHPQAKQAAVAAKLNKPANLPSKPLPPAQAVR 480
           LLGDDDAEDPSQLIAAKHA A   +KGSDHPQ KQAA AAK NKPANLPSKPLPPAQAVR
Sbjct: 421 LLGDDDAEDPSQLIAAKHAAAVLSRKGSDHPQGKQAAAAAKQNKPANLPSKPLPPAQAVR 480

Query: 481 EAKNEGGRGGRGSGRGGGGRGYGRGRGNGGFNRESSNNEHSFSSNPEDGETGRTTERRGG 540
           EAKNEGGRGGRGSGRGGGG GYGRGRG+GGFNRE   N++SFSSNPEDGETGRTTE+RGG
Sbjct: 481 EAKNEGGRGGRGSGRGGGGYGYGRGRGSGGFNREFPYNDYSFSSNPEDGETGRTTEKRGG 540

Query: 541 YGGPRGRGGRRGGFNNGDSVDGERPRGVFERHSGTGRGIFYALEMNSSVKGLGVETGEGQ 600
           YGGPRGRGGRRGGFNNG++ DGER RG FER SGTG G  +  E           +G G 
Sbjct: 541 YGGPRGRGGRRGGFNNGEASDGERFRGAFERQSGTGYGNDFKRE----------GSGRGN 600

Query: 601 LTNCLSKYMSTFWMLLVAEEVNESEKKLGDEKPVHEDDTAGVNIESSAKESEEKEPEDKE 660
                 ++         AEEVNE++KK+GDEKPVHEDD      E+SA++ EEKEPEDKE
Sbjct: 601 WGRPTDEFSEG------AEEVNETQKKVGDEKPVHEDD------ENSARQLEEKEPEDKE 660

Query: 661 MTLEEYEKLLEEKRKTLLSLKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKE 720
           MTLEEYEKL EEKRK LL+LKTEERKVDPKEFAS+QQLSSKK+NQDVFIKLGSDKDKRKE
Sbjct: 661 MTLEEYEKLKEEKRKALLALKTEERKVDPKEFASMQQLSSKKDNQDVFIKLGSDKDKRKE 720

Query: 721 TADKEERTKKSLSINEFLKPAEGERHYTPGGRGRGRGRGSRGGFVGSLVSSNV-AAPSIE 762
            ADKEERTKKSLSINEFLKPAEGERHY PGGRGRGRGRGSRGG+VGS +SSNV AAPSIE
Sbjct: 721 IADKEERTKKSLSINEFLKPAEGERHYMPGGRGRGRGRGSRGGYVGSSMSSNVAAAPSIE 767

[Close]

BLAST of CcUC06G111810 vs. NCBI nr
Match: KAG6575278.1 (RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1118.6 bits (2892), Expect = 0.0e+00
Identity = 644/772 (83.42%), Postives = 678/772 (87.82%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           MATVNPFDLLGDDDAEDPSQLIAAKQ AAVTAPP KKG AQTKPV S +QQNKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKQVAAVTAPPPKKGSAQTKPVVSPSQQNKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNNENTNAPEDGEGGKT 120
           PLPP+QAVRE+RNEGSRGGRGSGRGGGRGYGRGREGGGFNRD  N+ENT+APEDGE GKT
Sbjct: 61  PLPPSQAVREARNEGSRGGRGSGRGGGRGYGRGREGGGFNRDFANSENTSAPEDGEAGKT 120

Query: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTGRGNEFKREGAGRGNWGRST 180
           TERRGYGGPRGRGGRRGGFNNGEA DGERPRR FERHSGTGRGNE+KREGAGRGNWGR  
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAGDGERPRRVFERHSGTGRGNEYKREGAGRGNWGRPA 180

Query: 181 DEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEMTLEEYEKLL 240
           DE AEVAEEAVNE EKNVGDEKP+QE+DTS VN ENPAKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 DEFAEVAEEAVNEPEKNVGDEKPVQEEDTSGVNRENPAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEERAKK 300
           EDKRKAL+ALKTEERKVDPKEFASMQQLSSKK+NNDIFIKLGSEKDKRKEIADKEER KK
Sbjct: 241 EDKRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYGYSGSSMSNVAAPSIEDPGQFPI--- 360
           SLSINEFLRPAEGERHY PGGRGRGRGRGSRGGYG  GSS+SNVAAPSIEDPGQFP    
Sbjct: 301 SLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYG--GSSISNVAAPSIEDPGQFPTLEI 360

Query: 361 ------LGFRGRLSRSAISFQLFRYWFEDSSEMATTNPFDLLGDDDAEDPSQLIAAKHAV 420
                 LGFRGRLSRSAI FQLFRYWF+ SSEMATTNPFDLLGDDDAEDPSQLIAAKHA 
Sbjct: 361 HGVLVKLGFRGRLSRSAIPFQLFRYWFQHSSEMATTNPFDLLGDDDAEDPSQLIAAKHAA 420

Query: 421 AAAPKKGSDHPQAKQAAVAAKLNKPANLPSKPLPPAQAVREAKNEGGRGGRGSGRGGGGR 480
           A   +KGSDHPQ KQAA AAK NKPANLPSKPLPPAQAVREAKNEGGRGGRGSGRGGGG 
Sbjct: 421 AVLSRKGSDHPQGKQAAAAAKQNKPANLPSKPLPPAQAVREAKNEGGRGGRGSGRGGGGY 480

Query: 481 GYGRGRGNGGFNRESSNNEHSFSSNPEDGETGRTTERRGGYGGPRGRGGRRGGFNNGDSV 540
           GYGRGRG+GGFNRE   N++SFSSNPEDGETGRTTE+RGGYGGPRGRGGRRGGFNNG++ 
Sbjct: 481 GYGRGRGSGGFNREFPYNDYSFSSNPEDGETGRTTEKRGGYGGPRGRGGRRGGFNNGEAS 540

Query: 541 DGERPRGVFERHSGTGRGIFYALEMNSSVKGLGVETGEGQLTNCLSKYMSTFWMLLVAEE 600
           DGER RG FER SGTG G  +  E      G G     G+ T+  S+          AEE
Sbjct: 541 DGERFRGAFERQSGTGYGNDFKRE------GFG-RGNWGRPTDEFSE---------GAEE 600

Query: 601 VNESEKKLGDEKPVHEDDTAGVNIESSAKESEEKEPEDKEMTLEEYEKLLEEKRKTLLSL 660
           VNE++KK+GDEKPVHEDD      E+SA++ EEKEPEDKEMTLEEYEKL EEKRK LL+L
Sbjct: 601 VNETQKKVGDEKPVHEDD------ENSARQLEEKEPEDKEMTLEEYEKLKEEKRKALLAL 660

Query: 661 KTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEERTKKSLSINEFLKP 720
           KTEERKVDPKEFAS+QQLSSKK+NQDVFIKLGSDKDKRKE ADKEERTKKSLSINEFLKP
Sbjct: 661 KTEERKVDPKEFASMQQLSSKKDNQDVFIKLGSDKDKRKEIADKEERTKKSLSINEFLKP 720

Query: 721 AEGERHYTPGGRGRGRGRGSRGGFVG----SLVSSNV-AAPSIEDPGQFPTL 759
           AEGERHY PGGRGRGRGRGSRGG+VG    S +SSNV AAPSIEDPGQFPTL
Sbjct: 721 AEGERHYMPGGRGRGRGRGSRGGYVGSSMNSSMSSNVAAAPSIEDPGQFPTL 748

[Close]

BLAST of CcUC06G111810 vs. NCBI nr
Match: KAG7025351.1 (RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 974.5 bits (2518), Expect = 5.1e-280
Identity = 583/764 (76.31%), Postives = 620/764 (81.15%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           MATVNPFDLLGDDDAEDPSQLIAAK+ AAVT+P  KKGPAQ KP   GAQQNKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNNENTNAPEDGEGGKT 120
           PLPPAQAVRE+RNEG RGGRGSGRG GRGYGRGREG GF R S NNEN +A EDGE GKT
Sbjct: 61  PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120

Query: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTGRGNEFKREGAGRGNWGRST 180
           TERRGYGGPRGRGGRRGGFNNGEAADGERPRR FERHSGTG GNEFKREG+GRGNWGR T
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT 180

Query: 181 DEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEMTLEEYEKLL 240
           +E AE  EEAVNE EKN+GDEKP+QED+   VNTEN AKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 EEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEERAKK 300
           E+KRKAL+ALKTEERKVDPKEFASMQQLS KK+NNDIFIKLGSEKDKRKEIADKEER KK
Sbjct: 241 EEKRKALMALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLRPAEGERHYAPGGRGRGR-GRGSRGGYGYSGSSMSNVAAPSIEDPGQFPILG 360
           SLSINEFL+PAEGERHY  GGRGRGR GRGSRG  GYSG+S+SNV APSIEDPGQFP LG
Sbjct: 301 SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRG--GYSGNSISNVPAPSIEDPGQFPTLG 360

Query: 361 FRGRLSRSAISFQLFRYWFEDSSEMATTNPFDLLGDDDAEDPSQLIAAKHAVAAAPKKGS 420
                                + EMAT NPFDLLGDDDAEDPSQLIAAK  VAA PKKG 
Sbjct: 361 --------------------ANLEMATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGP 420

Query: 421 DHPQAKQAAVAAKLNKPANLPSKPLPPAQAVREAKNEGGRGGRGSGRGGGGRGYGRGRGN 480
              Q K AA+ A+ NK A+LPSKPLPPAQAVREA+NE  RGGRGSGR GGGRGYGRGR  
Sbjct: 421 --VQTKPAALGAQQNKAASLPSKPLPPAQAVREARNESSRGGRGSGR-GGGRGYGRGREG 480

Query: 481 GGFNRESSNNEHSFSSNPEDGETGRTTERRGGYGGPRGRGGRRGGFNNGDSVDGERPRGV 540
            GFNR S NNE   SS  EDGETG+TTERR GY GPRGRGGRRGGFNNG++ DGERPR V
Sbjct: 481 SGFNRGSFNNES--SSAAEDGETGKTTERR-GYAGPRGRGGRRGGFNNGEATDGERPRRV 540

Query: 541 FERHSGTGRGIFYALEMNSSVKGLGVETGEGQLTNCLSKYMSTFWMLLVAEEVNESEKKL 600
           FERHSGTG G  +  E           +G G       ++          E VNE+EK +
Sbjct: 541 FERHSGTGHGNEFKRE----------GSGRGNWGRPTEEFAEA-----AEEAVNETEKNM 600

Query: 601 GDEKPVHEDDTAGVNIESSAKESEEKEPEDKEMTLEEYEKLLEEKRKTLLSLKTEERKVD 660
           GDEKPV EDDT  VN E+SAKE EE EPEDKEMTLEEYEKLLEEKRK LL+LKTE RKVD
Sbjct: 601 GDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLEEKRKALLTLKTEGRKVD 660

Query: 661 PKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEERTKKSLSINEFLKPAEGERHYT 720
           PKEFAS+QQLS KKEN D+FIKLGS+KDKRKE A+KE+RTKKSLSINEFLKPAEGERHY 
Sbjct: 661 PKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKSLSINEFLKPAEGERHYA 720

Query: 721 PGGRGRGRGRGSRGGFVGSLVSS--NVAAPSIEDPGQFPTLGAK 762
           PGGRGRGRGRGSRGG  G   +S  NVA PSIEDPGQFPTLGAK
Sbjct: 721 PGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK 721

[Close]

BLAST of CcUC06G111810 vs. NCBI nr
Match: XP_042059262.1 (uncharacterized protein LOC121803693 [Salvia splendens])

HSP 1 Score: 615.1 bits (1585), Expect = 7.8e-172
Identity = 455/793 (57.38%), Postives = 545/793 (68.73%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           MAT+NPFDLL DDD EDPS L     AA +   P K        VPS  Q  +P  LPSK
Sbjct: 1   MATINPFDLL-DDDTEDPSLL-----AAQLKIEPKK------AVVPSAKQPPQP-KLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNNENT------NAPED 120
           PLPPAQAVRE+++E +R    SGRGGGRG+GRGR  GG NR+S +N N+      +AP+ 
Sbjct: 61  PLPPAQAVREAKSESAR----SGRGGGRGFGRGR--GGHNRESASNGNSYGNREFSAPQG 120

Query: 121 G--EGGKTTERR-GYGGPRGRGGRRGGFNNGEAADG-ERPRRAFERHSGTGRGNEFKREG 180
              + GK+ ERR GYG P  RGGRRGG+ NGEA +  ERPRR FER SGTGRGNE KREG
Sbjct: 121 APDQDGKSYERRGGYGAP--RGGRRGGYTNGEAGEEVERPRRTFERRSGTGRGNEMKREG 180

Query: 181 AGRGNWGRSTDEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAK-EPEETEPEDK 240
           +GRGNWG   DE+A + EEAV+  EKN+  EKP  E++ +V   +  AK E EE E EDK
Sbjct: 181 SGRGNWGAPEDELAPLTEEAVDGDEKNLNVEKPPVEENPAVDGEKEAAKDENEEKEAEDK 240

Query: 241 EMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRK 300
           EMTLEEYEKLLE+KRKAL+ALKTE RKVD KEFASMQQL+ KK N++IFIKLGSE DK+K
Sbjct: 241 EMTLEEYEKLLEEKRKALVALKTEARKVDGKEFASMQQLTDKKANDEIFIKLGSENDKKK 300

Query: 301 EIADKEERAKKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYGYSGSS-MSNVAAPS 360
           ++A+KE++AKKS+SINEFL+PAEGER++ PGGRGRGRGRG RGG GY GS+  S   AP+
Sbjct: 301 DLAEKEQKAKKSVSINEFLKPAEGERYHNPGGRGRGRGRGPRGG-GYVGSNDRSGFQAPA 360

Query: 361 IEDPGQFPILG-FRGRLSRS-----AISFQLFRYWFE-DSSEMATTNPFDLLGDDDAEDP 420
           IEDPGQFP LG +  ++  S      +  +  R+ F   + EMAT NPFDLLG DD EDP
Sbjct: 361 IEDPGQFPTLGDYVLQIGNSYYPLMNLQDEKTRFCFGFVAQEMATINPFDLLG-DDTEDP 420

Query: 421 SQLIAAKHAVAAAPKKGSDHPQAKQAAVAAKLNKPANLPSKPLPPAQAVREAKNEGGRGG 480
           S L+AA+  +   PKK +  P AK+AA          LPSKP+PPAQAVREAK +  RGG
Sbjct: 421 S-LLAAQQKI--EPKK-TIAPPAKRAA-------QPKLPSKPVPPAQAVREAKYDSARGG 480

Query: 481 RGSGRGGGGRGYGRGRGNGGFNRESSNNEHSF-------SSNPEDGETGRTTERR-GGYG 540
            G GR   GRGY R  G    NR+ +NN +S+       +    D   GR++ERR GGYG
Sbjct: 481 -GRGR---GRGYSRD-GGARPNRDFANNGNSYGNKEVFAAQGAPDEVDGRSSERRGGGYG 540

Query: 541 GPRG--RGGRRGGFNNGDSVDG--ERPRGVFERHSGTGRGIFYALEMNSSVKGLGVETGE 600
           GPRG   GGRRGG++NGD+ +G  +R R   ER SGTG G     EM     G G     
Sbjct: 541 GPRGSFSGGRRGGYSNGDAGEGDRDRTRRPLERRSGTGHG----TEMKREGSGRG----- 600

Query: 601 GQLTNCLSKYMSTFWMLLVAEEV-NESEKKLGDEKPVHEDDTAGVNIESSAKESEEKEPE 660
                  +  M T  +  V EEV NE EK L  EKP+ E+D A    +   KE  E++PE
Sbjct: 601 -------NWGMHTDELAQVTEEVGNEDEKNLSVEKPLGEEDAAENVEKEGTKEENEEKPE 660

Query: 661 DKEMTLEEYEKLLEEKRKTLLSLKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDK 720
           DKEMTLEEYEKLLEEKRK LL LK+EERKVD KEF S+Q LS+KK N D+FIKLGS+KDK
Sbjct: 661 DKEMTLEEYEKLLEEKRKALLGLKSEERKVDAKEFESMQALSNKKTNDDIFIKLGSEKDK 720

Query: 721 RKETADKEERTKKSLSINEFLKPAEGERHYTPGGRGRGRGRGSRGGFVGSLVSSNVAAPS 762
           +KE A+KEER KK++SINEFLKPAEGE++Y+PGGRGRGRGRG+RGGF G    S   AP+
Sbjct: 721 KKELAEKEERAKKAVSINEFLKPAEGEKYYSPGGRGRGRGRGARGGFGGPSDRSTFQAPA 738

[Close]

BLAST of CcUC06G111810 vs. NCBI nr
Match: XP_038874269.1 (RGG repeats nuclear RNA binding protein A-like [Benincasa hispida])

HSP 1 Score: 596.7 bits (1537), Expect = 2.9e-166
Identity = 335/359 (93.31%), Postives = 337/359 (93.87%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           MATVNPFDLLGDDDAEDPSQLIAA Q AAV APPSKKGPAQTKPV      NKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAANQVAAVAAPPSKKGPAQTKPV-----ANKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNNENTNAPEDGEGGKT 120
           PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRD  NNE+TNAPEDGEGGKT
Sbjct: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDFANNESTNAPEDGEGGKT 120

Query: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTGRGNEFKREGAGRGNWGRST 180
            ERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTGRGNEFKREGAGRGNWGRST
Sbjct: 121 AERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTGRGNEFKREGAGRGNWGRST 180

Query: 181 DEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEMTLEEYEKLL 240
           DE AEV EEAVNETEKNVGDEKPIQEDDTS VNTENPAKEPEE  PEDKEMTLEEYEKLL
Sbjct: 181 DEFAEVPEEAVNETEKNVGDEKPIQEDDTSGVNTENPAKEPEEAVPEDKEMTLEEYEKLL 240

Query: 241 EDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEERAKK 300
           EDKRKALLALKTEERKVDPKEFASMQQLSSKKDNN+IFIKLGSEKDKRKEIADKEER KK
Sbjct: 241 EDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNEIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYGYSGSSMSNVAAPSIEDPGQFPILG 360
           SLSINEFLRPAEGERHYAPGGRGRGRGRG RG  GYSGSSMSNVAAPSIEDPGQFP LG
Sbjct: 301 SLSINEFLRPAEGERHYAPGGRGRGRGRGLRG--GYSGSSMSNVAAPSIEDPGQFPTLG 352

[Close]

BLAST of CcUC06G111810 vs. ExPASy Swiss-Prot
Match: O23523 (RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGGA PE=1 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.5e-72
Identity = 210/377 (55.70%), Postives = 250/377 (66.31%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           MAT+NPFDLL DDDAEDPSQL     A A+      K   Q   +P+         LPSK
Sbjct: 1   MATLNPFDLL-DDDAEDPSQL-----AVAIEKIDKSKKSGQVSSLPA----KSAPKLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNN----ENTNAPEDGE 120
           PLPPAQAVRE+R++  RGG G G     G+ RGR  GG+NRD  NN      T    +G+
Sbjct: 61  PLPPAQAVREARSDAPRGGGGRG-----GFNRGR--GGYNRDDGNNGYSGGYTKPSGEGD 120

Query: 121 GGKTT-ERRGYGG-PRGR---------GGRRGGFNNGEAADGERPRRAFERHSGTGRGNE 180
             K++ ERRG GG PRG          GGRRGGF+N E  DGERPRRAFER SGTGRG++
Sbjct: 121 VSKSSYERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSD 180

Query: 181 FKREGAGRGNWGRSTDEVAEVAEEAVN-ETEKNVGDEKPIQEDDTSVVNTENPAKEPEET 240
           FKR+G+GRGNWG   +E+A   E     ETEK+VG EKP  +D  +  N E+     EE 
Sbjct: 181 FKRDGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--VEEK 240

Query: 241 EPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSE 300
           EPEDKEMTL+EYEK+LE+K+KAL +L T ERKVD K F SMQQLS+KK N++IFIKLGS+
Sbjct: 241 EPEDKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSD 300

Query: 301 KDKRKEIADKEERAKKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGY--GYSGSSMS 360
           KDKRK+  DKEE+AKK++SINEFL+PAEG  +Y  G  GRGRG   RGG   G SG    
Sbjct: 301 KDKRKD--DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESG-GYR 353

[Close]

BLAST of CcUC06G111810 vs. ExPASy Swiss-Prot
Match: Q9SQ56 (RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RggA PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 8.4e-68
Identity = 179/299 (59.87%), Postives = 216/299 (72.24%), Query Frame = 0


Query: 78  GGRGSGRGGGRGYGRGREGGGFNRDSVNNENT-----------NAPEDGEGGKTTERR-G 137
           GGRG  RGGGRG G GR G GFN++S ++EN               EDGE GK +ERR G
Sbjct: 3   GGRGGPRGGGRGRGPGR-GRGFNQESADDENAFGSNNGFSGRYRVQEDGESGKLSERRGG 62

Query: 138 YGGPRG--RGGRRGGFNNGEAA--DGERPRRAFERHSGTGRGNEF-KREGAGRGNWGRST 197
           YGGPRG   GGRRGGFNNG+AA  +GERPRR F+R SGTGRGNE+ KREG+GRGNWG   
Sbjct: 63  YGGPRGGFHGGRRGGFNNGDAAEGEGERPRRVFDRRSGTGRGNEYIKREGSGRGNWGTPA 122

Query: 198 DEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEMTLEEYEKLL 257
           D++A+  E  VN+ EK V  EK   +++    N ++ A EPEE EPE+KEMTLEEYEKL+
Sbjct: 123 DDIAQETEVPVNDGEKIVEAEKEAGQEEAEDTNKDSTAAEPEEKEPEEKEMTLEEYEKLM 182

Query: 258 EDKRKALLALKTEERKVD-PKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEERAK 317
           E+KRKALLALK EERKV+  KE  SMQ LS+KK++++IFIKLGSEK+KRKE     E+A+
Sbjct: 183 EEKRKALLALKPEERKVNLDKELESMQLLSNKKNDDEIFIKLGSEKEKRKEAV---EKAR 242

Query: 318 KSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYGYSGSSMSNVAAPSIEDPGQFPIL 359
           K+ SINEFL+PAEGE +   GGRGRG GRG RGG+G       + +APSIED GQFP L
Sbjct: 243 KTQSINEFLKPAEGENYSRRGGRGRGPGRG-RGGFGGGVGGNKSFSAPSIEDVGQFPSL 296

[Close]

BLAST of CcUC06G111810 vs. ExPASy Swiss-Prot
Match: O23593 (RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGGB PE=1 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 3.7e-63
Identity = 193/384 (50.26%), Postives = 243/384 (63.28%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           MA+VNPFDLL DDDAEDPSQ++A+K    V        P QT          K   +P+K
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASKPLKVV-------APVQTA---------KSGKMPTK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNNENTNAPEDGEGG-- 120
           P PP+QAVRE+RN    GGRG+GRGG   YGRG  GG  NRDS NN+   A E+G GG  
Sbjct: 61  PPPPSQAVREARN-APGGGRGAGRGG--SYGRGGRGGN-NRDSRNNDGP-ANENGYGGGY 120

Query: 121 -KTTERRG--YGGPRG--RGGRRGGFNN-GEAADGERPRRAFERHSGTGRGNEFKREGAG 180
            ++ E  G   GGP G  RG RRG ++N G++ D ERPR+ ++RHS T  GNE KR+GAG
Sbjct: 121 RRSEEGDGARRGGPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAG 180

Query: 181 RGNWGRSTDEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEMT 240
           R NWG + D++  V EE+    +KN+  EK   E + +    E PA++ EE +PEDKEMT
Sbjct: 181 RANWGTTQDDITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEKAEE-KPEDKEMT 240

Query: 241 LEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNND-IFIKLGSEKDKRKEI 300
           LEEYEK+LE+K+KAL A K EERKVD K F +MQQLSSKK NND +FIKLG+EKDKR  I
Sbjct: 241 LEEYEKVLEEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--I 300

Query: 301 ADKEERAKKSLSINEFLRPAEGERHYAPGG--RGRGRGRGSR--------------GGYG 360
            ++EE+ +KSLSINEFL+PA+G+ +Y P G  +G   GRG R              G   
Sbjct: 301 TEREEKTRKSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQ 359

[Close]

BLAST of CcUC06G111810 vs. ExPASy Swiss-Prot
Match: Q9LVT8 (RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGGC PE=1 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 9.9e-61
Identity = 194/385 (50.39%), Postives = 236/385 (61.30%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAA-----KQAAAVTAPPSKKGPAQTKPVPSGAQQNKPA 60
           MA++NPFDLLG DDAEDPSQL  A     ++AAA   PP                  K A
Sbjct: 1   MASLNPFDLLG-DDAEDPSQLAVALSQKVEKAAAAVQPP------------------KAA 60

Query: 61  SLPSKPLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNNE---NTNA- 120
             P+KP PP+QAVRESRN   +GGRG G GG  G+ RGR  GG+NRD+ NN+   N N  
Sbjct: 61  KFPTKPAPPSQAVRESRN-APQGGRG-GTGGRGGFSRGRGNGGYNRDNRNNDAPGNENGF 120

Query: 121 -------PEDGEG---GKTTERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTG 180
                   ED +G   G +      GG R  G RRGG  NGE+ D ERP R ++RHS TG
Sbjct: 121 SGGYRRPSEDADGASRGGSVGGYRVGGGR-EGPRRGGVANGESGDVERPPRNYDRHSRTG 180

Query: 181 RGNEFKREGAGRGNWGRSTDEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEP 240
            G   KR G GRGNWG + D++   +EE   E EK+   EK   ED+T     E  A+E 
Sbjct: 181 HGTGMKRNGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEK 240

Query: 241 EETEPED---KEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKD-NNDI 300
            + E E+   +EMTLEEYEK+LE+K+KAL A K EERKVD K F SMQQLS+KK+ + +I
Sbjct: 241 AQKEAEEAEAREMTLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEI 300

Query: 301 FIKLGSEKDKRKEIADKEERAKKSLSINEFLRPAEGERHYAPGGRGRG-RGRGSRGGYGY 360
           FIKLGS+K+KRK   D  E+AKKSLSINEFL+PA+G+R+    GRG G RGRG RGG G 
Sbjct: 301 FIKLGSDKEKRK---DATEKAKKSLSINEFLKPADGKRY---NGRGGGSRGRGGRGGRGE 357

[Close]

BLAST of CcUC06G111810 vs. ExPASy TrEMBL
Match: A0A1S3CBH1 (H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103498821 PE=4 SV=1)

HSP 1 Score: 596.3 bits (1536), Expect = 1.8e-166
Identity = 333/361 (92.24%), Postives = 343/361 (95.01%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           MAT+NPFDLLGDDDAEDPSQLIAAK AA  TAP SKKGPAQTKP+PSGAQQNKPASLPSK
Sbjct: 1   MATLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKGPAQTKPLPSGAQQNKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGR--GYGRGREGGGFNRDSVNNENTNAPEDGEGG 120
           PLPPAQAVRESRNEGSRGGRGSGRGGGR  GYGRGREGGGFNRDS N+EN NAPEDG GG
Sbjct: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSANSENINAPEDGVGG 120

Query: 121 KTTERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTGRGNEFKREGAGRGNWGR 180
           KTTERRGYGGPRGRGGRRGGFN+GE A+GERPRRAFERHSGTGRGNEFKREG+GRGNWGR
Sbjct: 121 KTTERRGYGGPRGRGGRRGGFNDGENAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR 180

Query: 181 STDEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEMTLEEYEK 240
           STDE AEVAEE VNETEKNVGDEKPIQE+DTS  NT++PAKEPEETEPEDKEMTLEEYEK
Sbjct: 181 STDEFAEVAEETVNETEKNVGDEKPIQENDTSGANTDDPAKEPEETEPEDKEMTLEEYEK 240

Query: 241 LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEERA 300
           LLEDKRK+LLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEER 
Sbjct: 241 LLEDKRKSLLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEERT 300

Query: 301 KKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYGYSGSSMSNVAAPSIEDPGQFPIL 360
           KKSLSINEFLRPAEGERHY PGGRGRGRGRGSRG  GYSGSSMSNVAAPSIEDPGQFPIL
Sbjct: 301 KKSLSINEFLRPAEGERHYTPGGRGRGRGRGSRG--GYSGSSMSNVAAPSIEDPGQFPIL 359

[Close]

BLAST of CcUC06G111810 vs. ExPASy TrEMBL
Match: A0A5A7TA33 (H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002670 PE=4 SV=1)

HSP 1 Score: 591.7 bits (1524), Expect = 4.5e-165
Identity = 333/362 (91.99%), Postives = 343/362 (94.75%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           MAT+NPFDLLGDDDAEDPSQLIAAK AA  TAP SKKGPAQTKP+PSGAQQNKPASLPSK
Sbjct: 1   MATLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKGPAQTKPLPSGAQQNKPASLPSK 60

Query: 61  PLPPAQA-VRESRNEGSRGGRGSGRGGGR--GYGRGREGGGFNRDSVNNENTNAPEDGEG 120
           PLPPAQA VRESRNEGSRGGRGSGRGGGR  GYGRGREGGGFNRDS N+EN NAPEDG G
Sbjct: 61  PLPPAQAVVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSANSENINAPEDGVG 120

Query: 121 GKTTERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTGRGNEFKREGAGRGNWG 180
           GKTTERRGYGGPRGRGGRRGGFN+GE A+GERPRRAFERHSGTGRGNEFKREG+GRGNWG
Sbjct: 121 GKTTERRGYGGPRGRGGRRGGFNDGENAEGERPRRAFERHSGTGRGNEFKREGSGRGNWG 180

Query: 181 RSTDEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEMTLEEYE 240
           RSTDE AEVAEE VNETEKNVGDEKPIQE+DTS  NT++PAKEPEETEPEDKEMTLEEYE
Sbjct: 181 RSTDEFAEVAEETVNETEKNVGDEKPIQENDTSGANTDDPAKEPEETEPEDKEMTLEEYE 240

Query: 241 KLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEER 300
           KLLEDKRK+LLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEER
Sbjct: 241 KLLEDKRKSLLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEER 300

Query: 301 AKKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYGYSGSSMSNVAAPSIEDPGQFPI 360
            KKSLSINEFLRPAEGERHY PGGRGRGRGRGSRG  GYSGSSMSNVAAPSIEDPGQFPI
Sbjct: 301 TKKSLSINEFLRPAEGERHYTPGGRGRGRGRGSRG--GYSGSSMSNVAAPSIEDPGQFPI 360

[Close]

BLAST of CcUC06G111810 vs. ExPASy TrEMBL
Match: A0A6J1EYL1 (RGG repeats nuclear RNA binding protein A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439720 PE=4 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 2.2e-164
Identity = 327/359 (91.09%), Postives = 338/359 (94.15%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           MATVNPFDLLGDDDAEDPSQLIAAKQ AAVTAPP KKG AQTKPV S +QQNKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKQVAAVTAPPPKKGSAQTKPVVSPSQQNKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNNENTNAPEDGEGGKT 120
           PLPP+QAVRE+RNEGSRGGRGSGRGGGRGYGRGREGGGFNRD  N+ENT+APEDGE GKT
Sbjct: 61  PLPPSQAVREARNEGSRGGRGSGRGGGRGYGRGREGGGFNRDFANSENTSAPEDGEAGKT 120

Query: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTGRGNEFKREGAGRGNWGRST 180
           TERRGYGGPRGRGGRRGGFNNGEA DGERPRR FERHSGTGRGNE KREGAGRGNWGR  
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAGDGERPRRVFERHSGTGRGNENKREGAGRGNWGRPA 180

Query: 181 DEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEMTLEEYEKLL 240
           DE AEVAEEAVNE EKNVGDEKP+QE+DTS VN+ENPAKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 DEFAEVAEEAVNEPEKNVGDEKPVQEEDTSGVNSENPAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEERAKK 300
           EDKRKAL+ALKTEERKVDPKEFASMQQLSSKK+NNDIFIKLGSEKDKRKEIADKEER KK
Sbjct: 241 EDKRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYGYSGSSMSNVAAPSIEDPGQFPILG 360
           SLSINEFLRPAEGERHY PGGRGRGRGRGSRGGYG  GSS+SNVAAPSIEDPGQFP LG
Sbjct: 301 SLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYG--GSSISNVAAPSIEDPGQFPTLG 357

[Close]

BLAST of CcUC06G111810 vs. ExPASy TrEMBL
Match: A0A0A0K9Z4 (HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G106180 PE=4 SV=1)

HSP 1 Score: 587.4 bits (1513), Expect = 8.5e-164
Identity = 329/361 (91.14%), Postives = 338/361 (93.63%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           M T+NPFDLLGDDDAEDPSQLIAAK AA  TAP SKK PAQTKP+PSGAQ NKPASLPSK
Sbjct: 1   MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGR--GYGRGREGGGFNRDSVNNENTNAPEDGEGG 120
           PLPPAQAVRESRNEGSRGGRGSGRGGGR  GYGRGREGGGFNRDS NNEN NAPEDG GG
Sbjct: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGG 120

Query: 121 KTTERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTGRGNEFKREGAGRGNWGR 180
           KT+ERRGYGGPRGRGGRRGGFN+GE A+GERPRRAFERHSGTGRGNEFKREG+GRGNWGR
Sbjct: 121 KTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR 180

Query: 181 STDEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEMTLEEYEK 240
           STDE AEVA E VNETEKNVGDEKPIQEDDTS VNTENPAKEP+ETEPEDKEMTLEEYEK
Sbjct: 181 STDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQETEPEDKEMTLEEYEK 240

Query: 241 LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEERA 300
           LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKE+ADKEER 
Sbjct: 241 LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEERT 300

Query: 301 KKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYGYSGSSMSNVAAPSIEDPGQFPIL 360
           KKSLSINEFLRPA+GERHYAPGGRGRGRGRGSRG  GYSGS MSNVAAPSI DPGQFP L
Sbjct: 301 KKSLSINEFLRPADGERHYAPGGRGRGRGRGSRG--GYSGSPMSNVAAPSIGDPGQFPTL 359

[Close]

BLAST of CcUC06G111810 vs. ExPASy TrEMBL
Match: A0A6J1F3H7 (RGG repeats nuclear RNA binding protein A-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439720 PE=4 SV=1)

HSP 1 Score: 584.7 bits (1506), Expect = 5.5e-163
Identity = 327/360 (90.83%), Postives = 338/360 (93.89%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           MATVNPFDLLGDDDAEDPSQLIAAKQ AAVTAPP KKG AQTKPV S +QQNKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKQVAAVTAPPPKKGSAQTKPVVSPSQQNKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNNENTNAPEDGEGGKT 120
           PLPP+QAVRE+RNEGSRGGRGSGRGGGRGYGRGREGGGFNRD  N+ENT+APEDGE GKT
Sbjct: 61  PLPPSQAVREARNEGSRGGRGSGRGGGRGYGRGREGGGFNRDFANSENTSAPEDGEAGKT 120

Query: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTGRGNEFKREGAGRGNWGRST 180
           TERRGYGGPRGRGGRRGGFNNGEA DGERPRR FERHSGTGRGNE KREGAGRGNWGR  
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAGDGERPRRVFERHSGTGRGNENKREGAGRGNWGRPA 180

Query: 181 DEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEMTLEEYEKLL 240
           DE AEVAEEAVNE EKNVGDEKP+QE+DTS VN+ENPAKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 DEFAEVAEEAVNEPEKNVGDEKPVQEEDTSGVNSENPAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKL-GSEKDKRKEIADKEERAK 300
           EDKRKAL+ALKTEERKVDPKEFASMQQLSSKK+NNDIFIKL GSEKDKRKEIADKEER K
Sbjct: 241 EDKRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLQGSEKDKRKEIADKEERTK 300

Query: 301 KSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYGYSGSSMSNVAAPSIEDPGQFPILG 360
           KSLSINEFLRPAEGERHY PGGRGRGRGRGSRGGYG  GSS+SNVAAPSIEDPGQFP LG
Sbjct: 301 KSLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYG--GSSISNVAAPSIEDPGQFPTLG 358

[Close]

BLAST of CcUC06G111810 vs. TAIR 10
Match: AT4G16830.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 275.0 bits (702), Expect = 1.8e-73
Identity = 210/377 (55.70%), Postives = 250/377 (66.31%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           MAT+NPFDLL DDDAEDPSQL     A A+      K   Q   +P+         LPSK
Sbjct: 1   MATLNPFDLL-DDDAEDPSQL-----AVAIEKIDKSKKSGQVSSLPA----KSAPKLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNN----ENTNAPEDGE 120
           PLPPAQAVRE+R++  RGG G G     G+ RGR  GG+NRD  NN      T    +G+
Sbjct: 61  PLPPAQAVREARSDAPRGGGGRG-----GFNRGR--GGYNRDDGNNGYSGGYTKPSGEGD 120

Query: 121 GGKTT-ERRGYGG-PRGR---------GGRRGGFNNGEAADGERPRRAFERHSGTGRGNE 180
             K++ ERRG GG PRG          GGRRGGF+N E  DGERPRRAFER SGTGRG++
Sbjct: 121 VSKSSYERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSD 180

Query: 181 FKREGAGRGNWGRSTDEVAEVAEEAVN-ETEKNVGDEKPIQEDDTSVVNTENPAKEPEET 240
           FKR+G+GRGNWG   +E+A   E     ETEK+VG EKP  +D  +  N E+     EE 
Sbjct: 181 FKRDGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--VEEK 240

Query: 241 EPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSE 300
           EPEDKEMTL+EYEK+LE+K+KAL +L T ERKVD K F SMQQLS+KK N++IFIKLGS+
Sbjct: 241 EPEDKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSD 300

Query: 301 KDKRKEIADKEERAKKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGY--GYSGSSMS 360
           KDKRK+  DKEE+AKK++SINEFL+PAEG  +Y  G  GRGRG   RGG   G SG    
Sbjct: 301 KDKRKD--DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESG-GYR 353

[Close]

BLAST of CcUC06G111810 vs. TAIR 10
Match: AT4G17520.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 244.6 bits (623), Expect = 2.6e-64
Identity = 193/384 (50.26%), Postives = 243/384 (63.28%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKQAAAVTAPPSKKGPAQTKPVPSGAQQNKPASLPSK 60
           MA+VNPFDLL DDDAEDPSQ++A+K    V        P QT          K   +P+K
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASKPLKVV-------APVQTA---------KSGKMPTK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNNENTNAPEDGEGG-- 120
           P PP+QAVRE+RN    GGRG+GRGG   YGRG  GG  NRDS NN+   A E+G GG  
Sbjct: 61  PPPPSQAVREARN-APGGGRGAGRGG--SYGRGGRGGN-NRDSRNNDGP-ANENGYGGGY 120

Query: 121 -KTTERRG--YGGPRG--RGGRRGGFNN-GEAADGERPRRAFERHSGTGRGNEFKREGAG 180
            ++ E  G   GGP G  RG RRG ++N G++ D ERPR+ ++RHS T  GNE KR+GAG
Sbjct: 121 RRSEEGDGARRGGPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAG 180

Query: 181 RGNWGRSTDEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEMT 240
           R NWG + D++  V EE+    +KN+  EK   E + +    E PA++ EE +PEDKEMT
Sbjct: 181 RANWGTTQDDITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEKAEE-KPEDKEMT 240

Query: 241 LEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNND-IFIKLGSEKDKRKEI 300
           LEEYEK+LE+K+KAL A K EERKVD K F +MQQLSSKK NND +FIKLG+EKDKR  I
Sbjct: 241 LEEYEKVLEEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--I 300

Query: 301 ADKEERAKKSLSINEFLRPAEGERHYAPGG--RGRGRGRGSR--------------GGYG 360
            ++EE+ +KSLSINEFL+PA+G+ +Y P G  +G   GRG R              G   
Sbjct: 301 TEREEKTRKSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQ 359

[Close]

BLAST of CcUC06G111810 vs. TAIR 10
Match: AT5G47210.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 236.5 bits (602), Expect = 7.1e-62
Identity = 194/385 (50.39%), Postives = 236/385 (61.30%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAA-----KQAAAVTAPPSKKGPAQTKPVPSGAQQNKPA 60
           MA++NPFDLLG DDAEDPSQL  A     ++AAA   PP                  K A
Sbjct: 1   MASLNPFDLLG-DDAEDPSQLAVALSQKVEKAAAAVQPP------------------KAA 60

Query: 61  SLPSKPLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNNE---NTNA- 120
             P+KP PP+QAVRESRN   +GGRG G GG  G+ RGR  GG+NRD+ NN+   N N  
Sbjct: 61  KFPTKPAPPSQAVRESRN-APQGGRG-GTGGRGGFSRGRGNGGYNRDNRNNDAPGNENGF 120

Query: 121 -------PEDGEG---GKTTERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTG 180
                   ED +G   G +      GG R  G RRGG  NGE+ D ERP R ++RHS TG
Sbjct: 121 SGGYRRPSEDADGASRGGSVGGYRVGGGR-EGPRRGGVANGESGDVERPPRNYDRHSRTG 180

Query: 181 RGNEFKREGAGRGNWGRSTDEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEP 240
            G   KR G GRGNWG + D++   +EE   E EK+   EK   ED+T     E  A+E 
Sbjct: 181 HGTGMKRNGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEK 240

Query: 241 EETEPED---KEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKD-NNDI 300
            + E E+   +EMTLEEYEK+LE+K+KAL A K EERKVD K F SMQQLS+KK+ + +I
Sbjct: 241 AQKEAEEAEAREMTLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEI 300

Query: 301 FIKLGSEKDKRKEIADKEERAKKSLSINEFLRPAEGERHYAPGGRGRG-RGRGSRGGYGY 360
           FIKLGS+K+KRK   D  E+AKKSLSINEFL+PA+G+R+    GRG G RGRG RGG G 
Sbjct: 301 FIKLGSDKEKRK---DATEKAKKSLSINEFLKPADGKRY---NGRGGGSRGRGGRGGRGE 357

[Close]

BLAST of CcUC06G111810 vs. TAIR 10
Match: AT4G16830.3 (Hyaluronan / mRNA binding family )

HSP 1 Score: 231.9 bits (590), Expect = 1.7e-60
Identity = 175/310 (56.45%), Postives = 211/310 (68.06%), Query Frame = 0


Query: 68  VRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNN----ENTNAPEDGEGGKTT-E 127
           VRE+R++  RGG G G     G+ RGR  GG+NRD  NN      T    +G+  K++ E
Sbjct: 48  VREARSDAPRGGGGRG-----GFNRGR--GGYNRDDGNNGYSGGYTKPSGEGDVSKSSYE 107

Query: 128 RRGYGG-PRGR---------GGRRGGFNNGEAADGERPRRAFERHSGTGRGNEFKREGAG 187
           RRG GG PRG          GGRRGGF+N E  DGERPRRAFER SGTGRG++FKR+G+G
Sbjct: 108 RRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGSG 167

Query: 188 RGNWGRSTDEVAEVAEEAVN-ETEKNVGDEKPIQEDDTSVVNTENPAKEPEETEPEDKEM 247
           RGNWG   +E+A   E     ETEK+VG EKP  +D  +  N E+     EE EPEDKEM
Sbjct: 168 RGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--VEEKEPEDKEM 227

Query: 248 TLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEI 307
           TL+EYEK+LE+K+KAL +L T ERKVD K F SMQQLS+KK N++IFIKLGS+KDKRK+ 
Sbjct: 228 TLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD- 287

Query: 308 ADKEERAKKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGY--GYSGSSMSNVAAPSI 360
            DKEE+AKK++SINEFL+PAEG  +Y  G  GRGRG   RGG   G SG    N AAP+I
Sbjct: 288 -DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESG-GYRNEAAPAI 343

[Close]

BLAST of CcUC06G111810 vs. TAIR 10
Match: AT5G47210.3 (Hyaluronan / mRNA binding family )

HSP 1 Score: 189.5 bits (480), Expect = 9.9e-48
Identity = 160/325 (49.23%), Postives = 196/325 (60.31%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAA-----KQAAAVTAPPSKKGPAQTKPVPSGAQQNKPA 60
           MA++NPFDLLG DDAEDPSQL  A     ++AAA   PP                  K A
Sbjct: 1   MASLNPFDLLG-DDAEDPSQLAVALSQKVEKAAAAVQPP------------------KAA 60

Query: 61  SLPSKPLPPAQAVRESRNEGSRGGRGSGRGGGRGYGRGREGGGFNRDSVNNE---NTNA- 120
             P+KP PP+QAVRESRN   +GGRG G GG  G+ RGR  GG+NRD+ NN+   N N  
Sbjct: 61  KFPTKPAPPSQAVRESRN-APQGGRG-GTGGRGGFSRGRGNGGYNRDNRNNDAPGNENGF 120

Query: 121 -------PEDGEG---GKTTERRGYGGPRGRGGRRGGFNNGEAADGERPRRAFERHSGTG 180
                   ED +G   G +      GG R  G RRGG  NGE+ D ERP R ++RHS TG
Sbjct: 121 SGGYRRPSEDADGASRGGSVGGYRVGGGR-EGPRRGGVANGESGDVERPPRNYDRHSRTG 180

Query: 181 RGNEFKREGAGRGNWGRSTDEVAEVAEEAVNETEKNVGDEKPIQEDDTSVVNTENPAKEP 240
            G   KR G GRGNWG + D++   +EE   E EK+   EK   ED+T     E  A+E 
Sbjct: 181 HGTGMKRNGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEK 240

Query: 241 EETEPED---KEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKD-NNDI 300
            + E E+   +EMTLEEYEK+LE+K+KAL A K EERKVD K F SMQQLS+KK+ + +I
Sbjct: 241 AQKEAEEAEAREMTLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEI 300

Query: 301 FIKLGSEKDKRKEIADKEERAKKSL 303
           FIKLGS+K+KRK   D  E+AKK L
Sbjct: 301 FIKLGSDKEKRK---DATEKAKKVL 300

The following BLAST results are available for this feature:

BLAST of CcUC06G111810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011066.1	0.0e+00	81.42	RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6575278.1	0.0e+00	83.42	RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp...	[more]
KAG7025351.1	5.1e-280	76.31	RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyros...	[more]
XP_042059262.1	7.8e-172	57.38	uncharacterized protein LOC121803693 [Salvia splendens]	[more]
XP_038874269.1	2.9e-166	93.31	RGG repeats nuclear RNA binding protein A-like [Benincasa hispida]	[more]

BLAST of CcUC06G111810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23523	2.5e-72	55.70	RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9SQ56	8.4e-68	59.87	RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=409...	[more]
O23593	3.7e-63	50.26	RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9LVT8	9.9e-61	50.39	RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]

BLAST of CcUC06G111810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CBH1	1.8e-166	92.24	H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7TA33	4.5e-165	91.99	H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1EYL1	2.2e-164	91.09	RGG repeats nuclear RNA binding protein A-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A0A0K9Z4	8.5e-164	91.14	HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G106...	[more]
A0A6J1F3H7	5.5e-163	90.83	RGG repeats nuclear RNA binding protein A-like isoform X1 OS=Cucurbita moschata ...	[more]

BLAST of CcUC06G111810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16830.1	1.8e-73	55.70	Hyaluronan / mRNA binding family	[more]
AT4G17520.1	2.6e-64	50.26	Hyaluronan / mRNA binding family	[more]
AT5G47210.1	7.1e-62	50.39	Hyaluronan / mRNA binding family	[more]
AT4G16830.3	1.7e-60	56.45	Hyaluronan / mRNA binding family	[more]
AT5G47210.3	9.9e-48	49.23	Hyaluronan / mRNA binding family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 233..256
None	No IPR available	COILS	Coil	Coil	coord: 634..657
None	No IPR available	GENE3D	6.10.140.1040		coord: 148..261 e-value: 5.9E-10 score: 41.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 649..761
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 481..500
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 302..335
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 678..722
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 596..637
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 410..544
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 302..321
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..115
None	No IPR available	PANTHER	PTHR12299:SF53	RGG REPEATS NUCLEAR RNA BINDING PROTEIN A	coord: 1..359 coord: 384..761
IPR006861	Hyaluronan/mRNA-binding protein	SMART	SM01233	HABP4_PAI_RBP1_2	coord: 536..659 e-value: 2.6E-14 score: 63.6 coord: 150..258 e-value: 1.1E-36 score: 137.9
IPR006861	Hyaluronan/mRNA-binding protein	PFAM	PF04774	HABP4_PAI-RBP1	coord: 150..257 e-value: 1.2E-26 score: 93.8 coord: 537..658 e-value: 6.5E-14 score: 52.8
IPR019084	Stm1-like, N-terminal	PFAM	PF09598	Stm1_N	coord: 1..81 e-value: 1.8E-18 score: 67.1 coord: 384..463 e-value: 4.7E-21 score: 75.4
IPR039764	RNA binding protein HABP4/SERBP1	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 1..359 coord: 384..761

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G111810.1	CcUC06G111810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003723	RNA binding