CcUC06G111060 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G111060
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description40S ribosomal protein S27
LocationCicolChr06: 1637214 .. 1647163 (-)
RNA-Seq ExpressionCcUC06G111060
SyntenyCcUC06G111060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCTGTAGTTAGTTATGAATTCTCATTTTTTTGGTTAAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAATATTTACCAGCTACGGCGGAATCGGAAACAAGTGTCAGATTTTGTGGCGGAGGCAGTCCGAAATGGCGTGTGGTTGTTTATATGTCTCCATACTTTCTCCTCCGAAGCTTCCTTCTCTTGATTATTCAGCTGTTACTAGAACTAAGTTGCTGCATCGTTCCGCAGTCTCTTTCCCTTCGCCATCTAAATTATCAGCTCTCAAGTGCAAGGCCGCTGGCCAAACCACCCCCAGTCCCGCCGTTTATCAGGGAATTTATGGTCCTTGGACTGTCGATTCTTCCGACGTTCGAGAGGTTCATTTCTCTTCTTTCATTTTCCTTTAGTTTCTTTCTAATTTTCGTCTCTTGCCGTTTGGGATTTGCGTTTGCCTTGTATGTTGTAAGTTCTAACTGGTTGTTTGTATTAACTCCAATATTCGTGTGTATTATAGTACATTACTATTCTAGAAATGTCGAGTATCTAGTTTAATAGTTTGAAGGGCAAATGTGAGAATGTTCTCACTGATGTTTTATTAATGCAAATACCTTCATATATATACACAATACAAGAGTGACAGCTATCACTAACATAACAAAAAACTAATTACAAAGTAATTAATTCCTTATACCCCCCAAAGTTGGAGTATTGAGTATATATGTTGAGAATACCCATCTCGGACATGAAAGACTGTTAAGGCGAAAGAAGATAGAGCCTTAGTGAACATGTCTGCCAACTGGGAGGATGAACGAACAAGTAACAGCTTCAAAGAACCCCGAGCAATCAAATCTCGTACAAAATGGCGGTCAATCTCTATATGCTTCGTCCGCTCATGAAAAGTAGTGTTAGTTGCAATAGATATTGCTGCCTGATTGTCACAATAGACCATAACATGGGCTACAGAACTAACACGTAAATCACAAAGAAGATTAGTAATCCAAGTTAACTCAATAGAAACACCTGCAGGAACTCTATACTCACCTTCAGCAAAAGATCTCGAACCAGTGGCTTGCTTTTTGGTTTTCCACGAAATTAATGAATCACCTAAAAATACAAAAGCTAACAGAACGATGAGTGTCTAAGCAAAAGCCCCAATCAGAATCCACAAAGGTCTTGAGTTGAAAATTAGAAGTAGACTTAATCAACTGTCCAACCGTGCCTTTTAAGAAGCGCAAAAGATGATGAATAGCCTGGAGATGCTGTTGGCATGATTTAGAAACATATTGGCTTAACTTGTGGACTGCAAAGGATACATCCGGGCACGAAATTTGAAGATAAAGCAAGCCGCCAACAAGGCCGCTATAATGAGAAGAAGATTTTGCATCTAACAAATCACCTTCTACAAACATTTTCAAATTAGGTGCCATAGGAGAATAACTCAGTTTAGCTGCCAAAAATCCAGAATCCTCAAGGATTTGAAGACACTATTTATGCTGAGAAAGATAAATGCCCTTGGTAGAACGAGATCATTTGAGCCCACAGAAGTAATTAGCATTGCCCAAATCCTTTAACAAGAATCTTGTTCTTAACAGCATCGAGCTCAATAGGCGACTATCCAGTGATTAAGTGATCATCAACATAGACTAATAGGGCAACAAAAGAAGAACCATGACCTCTTGTAAACAGGGAACAACCTTGGATTGAGAGAAACCATTAGACCAAATAATACAAATAATTCCTAATATCTAGTATTCTGTGCTACTCTGTTCTGTTGGTTTCTGGCTAATATTTTTGTATTCTATTAGTGCGTGGGAAACTATCTATTTTATATGGATTCTTAGTTACTCTTAAGGATGAGATTCTTTAAAAACTTTGCAATCCAAATGAATTAATAATCATGCTATTTACTCCATTGAATATGGCCTAAGTTGTACGAGAATTTGTGTTGCTGTATGGCTAGGCTAACTATTAGCATGAGCCAGGTCATTCAGGTTTATATGGATTCTCTGTTACTTTGAAGGATGAAATTATTTACTTACATCAAATCTATGCCATTTACTTCGTTAAAATATACCCTGAATGTAAAAATTTATGTTTAGATAAACTCCTTCCATGAGATTATGTAGGAGTACTGTATAAAAAAAAAAAAAAAAAAAAAAAGGTAACGTAGCTGCTTCTTCTAGCACCTTATCAAAAGAAATCTCTCTCGTCTTCTTACAGGTCTCTTATTCACCATTCCTAATCACATTTGGTTGTGGGTCTTCACTCAAGTGGCACATTCTCAGTTATAACAGTTCTAGGCTTCTAAGAAACATGAAAACGAGTAATGAGTAAATTCAACCATGATATGACTTGTTAATTAAGTGATTTTAGGTTCCTAGCTTCTTGATTGCGTATATATGTGTGTAATTCTCACAGTTTATTTTCACACGAATTTCAAGATGATTAAATGAGAAATTCAAATTTCCTGTTTCTTAATACACTTAATTGTTGTTGTGTTGTCTGGTTCTGGAATTGTCATGCAGCTCTTGTTCATATTATTATAGCCTACCTAATGTTGTGTCATCCAAGCCTCCTTACCGACAAGATCATGGTGCCTGGCTCAATAATTATATATGATTTGGTCATAGTGCTTAAACCTGATAGCAATCTTCATTTACTAGTAAATTTGGATCTGATGTCTACTCACTCAATACTCAGTTGAATCTGCATAGACAGTCTATGATAAGATGAAAACAGTCTCAAATATTTCAGTGATAATTTGCTTACTGTTGCAGGTAATTTTATATAGAGCGGGATTAGTGACAGCTGCTACCTCTTTTGTGATAGCTTCATCAGTTGCCTTTTTACCCGATAACTCTTCATTGAGTGACACACTTAAGCAAAATCTTGATGTGCTCTACGCCTTAGGTGGAGGAGGATTAGGCTTATCCCTAGTTTTGATTCACATATATGTAACTGCAATTAAGCGAACTCTTCAAGCTTTATGGGTGCTTGGTGTTGCTGGATCTTTGGTAACTTACTTAAATCTTGCACAACCAGCTGGGGACAGCTTAGTGCAGTATGTTGTTGATAATCCATCGGCAGTCTGGTTTATTGGTCCTCTCTATGCAGCACTGACTGGACTTGTCTTCAAAGAAGGTATCAAGTATTTTTAATATCTTCCAGGCCTTTAAATTAGTAATTGTGTCTTTAATGTATTGATGAAGCAAGGAAATAGTAAGAAGGAAGATGATATTTGTTAGGACGCCTCCTAACAAGAACACACTCAAGAACTCACAGCAAACTCAAGAACAATGAAATATGAAAATATATGGAAATATAAGGAAATGTGCTATAAGATCATAAGAACAAGTAACAAGGTAACCACTAGCCTTTCAAGACGGCTAGACTCTTCCAAATTCCCAACTAAGGAAATCCCACAAAATTCTTCACCCCTCCCTCTCAACCCACTCCTAGCTATTTATAACTAAAACCCTAACCAACTAACTATTTACTAATTTGCTCCCTTCTAATTACCATACTAATATTCTCCTAATAATCCTAGTATTGCCATAACTAGGGGCTTACAATGTTGAAGTTTAATAAGCTCCTCTATTGTTTAAGTCTCATAGATCTCTAATGTAGTCTTGATGAAGCAGGCAAAGAATGAGAACAAAGAAGACATTGAGTGCTGAGTCTGCTTTCCTTTTTCCACATGTACAAATTAGACTCTTAGTTATTAATTACGTTGCAGATGTTTTTGTTATGATATTGGGTTGATTTATAGAATCTGTCTCCTGTGGTTCTTTGTCCTTCCTGGTCATTTTTGGAAATACAAAAACAGCCTGGTGTATGATGTCTGAAGTGGAGCGAGACATATAATTCGTTATTTGTACTTTATGACAAGTGTCGGTTCAATTCCCAGTACTTGTTTGTCCTCTATATGCAGGGCTTTGCTATGGAAAGCTGGAGGCTGGCATTCTCACCTTTGTCATACCTACGCTACTTCTAGGCCACCTGGTAGGGCTGACGTTTATACTTCACAGTTTATAACTGGAAACTTGGCATATAATGATTAAGGTTCCATTTGATAACTAATTTTGTTTTTGGTTTTCTATTTTTGAAAATTAACCTTATAAGCACTATTTCTATGAGTAAGTTTTCTATGTTTTATAAACACTACTTCTAAAAAAGTAGTTTTCAGAAGCTTAATGTTGTTTTTAGAATTTAACTAGGAGTTCAAGTGTTCCTTTAAGAAAGTTGAAAACCATAATTGAAAAATTGGTTGGAACAAATATAAATTCAAAAACTAAAACTAAAAACAAAATCTTTATTGAAGTCAATTCATGACAATTTTTGCTGCTGGATTTCTTTTGTAGGACACTCTTTAAGTGCTGTATTTTTGCTTCTTGATAGTTTGCTTTATGTTGCTACTTTGTTGTTTTTCTGTTATGTTAATTTTTGTTTCCTTTTGTAAGCTCACATATTTGTTTTATTAATGAGGCTCAGCATGTGAATTACTTAAGGAAGAACTTAGAAGTAGGGAGAAATCAATAGTATGGAATATCAATTTATCATCTCCTACTTCAGTGCTACATGAAATGACCATTAAAATCAAAATCTCTAATTTTGGATTAGACTAATACTTTATGAATGCTAGCTGAAGTGTCTATCCATCGAAAAAAATCAATGCTAGGTTTTAGCAGAAAAATTTTCAGGATCTTTTAAATGGTAGTTCGCTATGAGTTGTTCATTTATCATTATGTTTTGAGCCGTAACATAAAATCTCTTTATAGTTTTGACCCTGTACACTGACCTTTCGGATGGGGTTTATTTGTAATGCAGACTGGTTTGATGGATGACGGGGTTAAACTTGCCCTGTTAGGTTCATGGATGGCTCTCTTTGTAGTATTTGCTGGAAGAAAGTTCAGTCAGCCAATCAAGGTAACGATGTCATTTTCCAAATTGCTTAAGCCTTGTTTGATAACCATTTTGCTTTTTGAAAAATGTGCTTGTTTTCTAATATTTCCTCTACAATAATTTTCATTTAAAAAAAAACTGGAGTTCTTAGCCAAATTTAAAAAATAAAATCATGTTACTAGAAACTGCTGTTTTTAGTTTTTGTTATTGGAACTTGATTAGGAATCCAAATATTTCTTTAATTAATGCGAGAACCATACTAAAAAAAATTATTGAGGAAAAAAAAATACAAATGATCTATCAAACGTGCTTTGGTTCCTCAAGGAATCAAGTTCAGAGACAGTTCTTTCTGCTTGTAACTCATTTGGGATGATACTATTTAAACAAATAGTTTTAAAATATTTAAAAATGAATAAAACGATTTGTTGCATATTGTACATCAATTAGCAGTACAGCATATAAAAACCTAACCTTTTCTTATCACTCTTTGGTGGATGAAAATACAGAGTTATGAGAAGCGAAGTATTTATTTGGGAATCAATTTATACTCTAAACTTGGTCTTGATTTGCTATTAAATTTATCTGATTTTATTTAATATTAGCTCACAATAACCTAAATAAAATTATTCTTCTCTAAAAATTTCACTTAAGAAAAATGATCACGTCATTCTTTCTAGATAAATACATAAACATAGATGAATATGAGATGATGATAGGCCACTTAAATTTAATGAAAAAACAGCTATTATTTATTTGAGTTTTGCATCTCTAATATAGATTCGTCCTCGCATTTGGTCATTTGGTCATGTGCAGAAGTTATGCATTATTGGGCTTAAAATGAAATTCTAATGGTGTCTAAATTGATTTATTTTTAAAAATTTAAGATTTAAATTATAGAATTATTAGTTTGAAGTTTTAATTGATATAATCTTCAAAGTTTAGAGCATAAATGAATCATTTTTTTTTTTTGTCCTCGAGCATTGCAACCTTTCACTCGAGTAGAAAGTAGAGCAATGGATTTATTTTGAAAATCAAACTTGAAAAATGAACACCATCAATATGTAGTTGCATTGTCTGACTGGTTTCATATTCATTTCCAGGATGATATTGGCGACAAATCTGTTTTCATGTTCAATGCACTTGGAGAGGACGAAAAGAAGGCCTTGATTGCAAAGCTTGAGCAGCAAGAGTTTGGTCAGAATGCTGATTAGAACACCCTGCAGGAAGAATCGTTCAATCGAGGAGCTTAGCAGACGATAAGTTATACTTTCTCACTACATCTTGTACTATAGTTAATGGTTTATACAGAACGCTACGAATAGTAGCTGCTCATGTTATTTTTGCAGTATAATATATACACTAGAAATTTACCAATGATAGGGTGTGGAAGGATAATTGGGAACTCCATATTTACTTGAACAAGAACAAACATGAAGATATAAATATAAACATCAGTGTCTAATTTATTGAAATTGTGCAACAAGTTCAGCGAGATGGGACTAGGCAGGGAAGAAAACGAAAAAAAAAGGTTTCAAATGGAGGGGAATAGAGAACCCCTTAGAACTCCATCCATTACAGGCAAATTCTGGTGGAGAACCCCATTATTGACACTAGTTCCCTTGCCTCCGTCAAAGCAGTAGACAGGGGCTTGCCATTTCTCATCTTCCAGCACAGCACCAACTTCAAATGTCATCACATGAGCCTGTCTTCCTGCACAATTAGGGAAGGGAAGGGAAGGAAAAACAACAATGAATCGTGAAAGGCAGGAAATTAAGAATGAAAGTGAAGAGGGTAGGGTAAAAAGAGGTTACCAGTGTAGAAGAGCCAATGAACGGGTCTCTTGGTCTCAACATCCTCGTAATACCAGATGAAATCGACCTTCTCCCAGACATTACAGAGGAAGCCATCGACATGGCGTTGACCCAGATATTTGGCTCCGTCGAGCCAATTGGGTCGTAGAATACCAACCTCAAGCTGAGCGGAAGAGCAAGTCTTAGAAGAGTCCAAAGTGTAGAAGAAGGAAGTGCCGTTGTTCCATTCGAGGTCGTAGAGAACGTTGCCGAGCTGGTGTTGGATGATGTTGAAGTTGCGACCATTAGGCCAGTCGTACCAGAGGTCGATTATCTGTAGAATTCCGGTGTGATTCATGAGTAGAATGGAGTGAAATTGGAGAGGCCATGGGGTTGGAACGGGATCCTCCGATATGGAATAACGTATACTAACACTCAGTAATGAAAGGATAAGGAAGAAGGTCACCTTGGAAGCCATGGTTTCTAGGTTCTCTCTCCTCTCTCACGCTGTCGGTAATTTATTTTCTTCTCCTCCAATCAAAGCCCACTTTTTTTTTTTCTTTTTTTAATCTATTGTTGGAATATTTCTTTACAAAAAAAAACTACTCAGTGCTGACTACGATTGTGCTCGTTTCAATTGCTGAATCATAGTTTCTCATTTGACCATTTTTTTTAGTTTCTTATTTAGTTAAAATGCAAAATTGGTCCTGTCAGTTTAGAAAAGTTTGATAAATCTTGATTAATGGTCTATGTAGTTTGATAAAATCATTATAAATAGTCTTTATCGTAAAGACTATTTATAAATGTTTTGTCAAATTTAGGGATTAAGTTCTAATTATAATTATAATTTTTTCAAATTATAAAAATCAAATTTGTAATTTAATTTTTTTTTTCGGATTGAACTACACAAAATGTATGCCTTGTGATGTACTTAACTATTGTTTTTTTTTTTTTATTTATTTAGGGAAAATGCATTTTTGGTCTAGTTTTTATTTAGTCTCTATTTTCAAAATGTTATAAGTTTTGAATTTGGTTTTAATTTAGTTCATTGGTTTTTAAATGACACAATTTTGCCATTTTCGTGTTTATAATTGATAAACAATTTTTTCCCCAATTAACAGTGATATCTATCATTCATACATATTTATTGTCTATATATCTATTAATTAACCTTAGTTAGTGGTAGGTATTGGTAGAAATTAAAATTGTGCTATATTTTGTGTTAGATTGTCATATATGCAATTGATCCAAAACTAAAATATACAAAATCAGTCAAACTAAGTACAACTTAATTGACATATATGAGTGTGTTAAACACAAAATATGTGGTTCAAATTTCCTATCCCAATTGTACTCAAGAAAAAAAGAAAAAAAACAAAATTAACTCATGTTCAAAGTAGGAGACTTTAAGGAGTTCTCTAGATTACATGTTTGTTTTATAAGAGTTTTGAATGCACTCTTAAAACATGAATTTTCAAGATTTCCTTGTTGAGAACAACCTGTTTACTAGCCCATTCATTTTTCTTATAGGCAATTGACAATATCTATGTTTTTCATTTATATATGAGGTAAACTCTATTTAAATTGTATAATGTAAAACTCAATTTATTTCAATTAAAATCTAAAGTGAACTTTTTCTATTTATTCTACTCTTCCAATATTGACCCTCCTTTTTTTTTAACCCACACATTATTTAAAATATTATCTATAATGTAGTAGTACAATTCATTAAAACAAATAGTACAATAGTTGCCATAGAGAATGGCTCAACTGACATCTGTATTTGTTATTGTAGTAATACATAGTCCATATTAGACTAAAAAAGAAAAACATATAATTGTCTACTTGTTAAATAAGTTCAAGTATTTCAAAATCTAATTCAAAATTAATATTCAATGCAAAAATTTTTTAGAAAGATCAAAACAATGTAAACTAACTTGTTAAGAAAAACATGTAAGATGAATTATCTGAAAATTGAAGGCTATTATTGGAATAATACCTCATTTTAAGGCATTCCTTTCATAAATCCTGCTAAACGAACATTACTATCTTAATATTTTGGACATCCTTCTATTTTTCTTTTTTATTGAAAAATAAACATGATTATCAAGCATTCTTCTACATATTTTCTCAAGCATCAGCCATATAATAATTTCACCTATCTTAATTAAAAAATAAAAAATAAAACCAACTATAGTCGGTTCTTCAACCTGAAAAATCAAAGATTTGGTTTTCCAACTAAAATAATAATAATAAAACTTATTTATTATTAACTAAAATCTGAATGGAGGGTTATTCCCTCTGCCTAATGGCAGCGCGAGTGCGTAGCCCTAGGCATTTCAAAAACTAAAGGCTGAGATTAATTTCTAAAGAAATCAAACGGTCCACAATTTCCAGCCGCTTCTTTATATTCATCCTAGACCGGCGCTTCTCTCTTCTTTCTTCACATTCATCGCACCGCCCTGTTTCTCTCGCGAACTGTCGTTCGGATTTTAGGGTTCGCGATCCAGACACTTCCTTTCTGATCATCATGGTAAACTCCAAATTTCCCTACTGCATTTTGATATTCGGATCCAACTAATTTCACTTATCTTTCGCCCTATTCACAGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAACTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGTATGTCGATTCTTGTAAATCGAAGCCTTTGTTTAATCTAATCTTTTTCTGGATGATGATGATCGAGCTGTTTTTTGAATTCTGATTGCAGGACGTGAAGTGTCAAGGTTGCTTTAACATGTAAGTTTTCATTTTTTTTTTTTTTTCCATCTAGTGTGGATATTTAGTTTTTTGAAGTGAATGATGACAAAAAGTTATTTGAATGAAAAACAGAACCACTGTGTTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAATTCCTTGCCACAGAATTGGCTTGTAGTAGGATAAGGATGGGTGGGGTTTGAATTTTGATATTGCAATTGAGCATATTTCGTCTTTGTCTCGGGTTTTTTTCTACATTTTGGTTGTTGATTAATCAATTTTGCTTGAGAAGAAGAGCATTTTGGCACCCCTGTTGCAGTACGTTAATTTTAATGTTGTCAATGAAACTAAGTTAAGTCATGTTTGAAGT

mRNA sequence

GTTCTGTAGTTAGTTATGAATTCTCATTTTTTTGGTTAAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAATATTTACCAGCTACGGCGGAATCGGAAACAAGTGTCAGATTTTGTGGCGGAGGCAGTCCGAAATGGCGTGTGGTTGTTTATATGTCTCCATACTTTCTCCTCCGAAGCTTCCTTCTCTTGATTATTCAGCTGTTACTAGAACTAAGTTGCTGCATCGTTCCGCAGTCTCTTTCCCTTCGCCATCTAAATTATCAGCTCTCAAGTGCAAGGCCGCTGGCCAAACCACCCCCAGTCCCGCCGTTTATCAGGGAATTTATGGTCCTTGGACTGTCGATTCTTCCGACGTTCGAGAGGTAATTTTATATAGAGCGGGATTAGTGACAGCTGCTACCTCTTTTGTGATAGCTTCATCAGTTGCCTTTTTACCCGATAACTCTTCATTGAGTGACACACTTAAGCAAAATCTTGATGTGCTCTACGCCTTAGGTGGAGGAGGATTAGGCTTATCCCTAGTTTTGATTCACATATATGTAACTGCAATTAAGCGAACTCTTCAAGCTTTATGGGTGCTTGGTGTTGCTGGATCTTTGGTAACTTACTTAAATCTTGCACAACCAGCTGGGGACAGCTTAGTGCAGTATGTTGTTGATAATCCATCGGCAGTCTGGTTTATTGGTCCTCTCTATGCAGCACTGACTGGACTTGTCTTCAAAGAAGGGCTTTGCTATGGAAAGCTGGAGGCTGGCATTCTCACCTTTGTCATACCTACGCTACTTCTAGGCCACCTGACTGGTTTGATGGATGACGGGGTTAAACTTGCCCTGTTAGGTTCATGGATGGCTCTCTTTGTAGTATTTGCTGGAAGAAAGTTCAGTCAGCCAATCAAGGATGATATTGGCGACAAATCTGTTTTCATGTTCAATGCACTTGGAGAGGACGAAAAGAAGGCCTTGATTGCAAAGCTTGAGCAGCAAGAGTTTGGTCAGAATGCTGATTAGAACACCCTGCAGGAAGAATCGTTCAATCGAGGAGCTTAGCAGACGATAAGTTATACTTTCTCACTACATCTTGTACTATAGTTAATGGTTTATACAGAACGCTACGAATAGTAGCTGCTCATGTTATTTTTGCAGTATAATATATACACTAGAAATTTACCAATGATAGGGTGTGGAAGGATAATTGGGAACTCCATATTTACTTGAACAAGAACAAACATGAAGATATAAATATAAACATCAGTGTCTAATTTATTGAAATTGTGCAACAAGTTCAGCGAGATGGGACTAGGCAGGGAAGAAAACGAAAAAAAAAGGTTTCAAATGGAGGGGAATAGAGAACCCCTTAGAACTCCATCCATTACAGGCAAATTCTGGTGGAGAACCCCATTATTGACACTAGTTCCCTTGCCTCCGTCAAAGCAGTAGACAGGGGCTTGCCATTTCTCATCTTCCAGCACAGCACCAACTTCAAATGTCATCACATGAGCCTGTCTTCCTGCACAATTAGGGAAGGGAAGGGAAGGAAAAACAACAATGAATCGTGAAAGGCAGGAAATTAAGAATGAAAGTGAAGAGGGTAGGGTAAAAAGAGGTTACCAGTGTAGAAGAGCCAATGAACGGGTCTCTTGGTCTCAACATCCTCGTAATACCAGATGAAATCGACCTTCTCCCAGACATTACAGAGGAAGCCATCGACATGGCGTTGACCCAGATATTTGGCTCCGTCGAGCCAATTGGGTCGTAGAATACCAACCTCAAGCTGAGCGGAAGAGCAAGTCTTAGAAGAGTCCAAAGTGTAGAAGAAGGAAGTGCCGTTGTTCCATTCGAGGTCGTAGAGAACGTTGCCGAGCTGGTGTTGGATGATGTTGAAGTTGCGACCATTAGGCCAGTCGTACCAGAGGTCGATTATCTGTAGAATTCCGGTGTGATTCATGAGTAGAATGGAGTGAAATTGGAGAGGCCATGGGGTTGGAACGGGATCCTCCGATATGGAATAACGTATACTAACACTCAGTAATGAAAGGATAAGGAAGAAGGTCACCTTGGAAGCCATGGTTTCTAGGTTCTCTCTCCTCTCTCACGCTGTCGCCGCTTCTTTATATTCATCCTAGACCGGCGCTTCTCTCTTCTTTCTTCACATTCATCGCACCGCCCTGTTTCTCTCGCGAACTGTCGTTCGGATTTTAGGGTTCGCGATCCAGACACTTCCTTTCTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAACTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAAGGTTGCTTTAACATAACCACTGTGTTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAATTCCTTGCCACAGAATTGGCTTGTAGTAGGATAAGGATGGGTGGGGTTTGAATTTTGATATTGCAATTGAGCATATTTCGTCTTTGTCTCGGGTTTTTTTCTACATTTTGGTTGTTGATTAATCAATTTTGCTTGAGAAGAAGAGCATTTTGGCACCCCTGTTGCAGTACGTTAATTTTAATGTTGTCAATGAAACTAAGTTAAGTCATGTTTGAAGT

Coding sequence (CDS)

ATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAACTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAAGGTTGCTTTAACATAACCACTGTGTTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA

Protein sequence

MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Homology
[Close]
BLAST of CcUC06G111060 vs. NCBI nr
Match: XP_008459925.1 (PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo] >XP_011656784.1 40S ribosomal protein S27-2 [Cucumis sativus] >XP_038875285.1 40S ribosomal protein S27-2 [Benincasa hispida] >ADN33695.1 40S ribosomal protein s27 [Cucumis melo subsp. melo] >KAA0039865.1 40S ribosomal protein S27-2 [Cucumis melo var. makuwa] >KAE8646752.1 hypothetical protein Csa_005058 [Cucumis sativus] >TYK24636.1 40S ribosomal protein S27-2 [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]
BLAST of CcUC06G111060 vs. NCBI nr
Match: XP_022991567.1 (40S ribosomal protein S27-2-like [Cucurbita maxima])

HSP 1 Score: 181.0 bits (458), Expect = 4.3e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 64  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 123

Query: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 87
           CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 124 CQTVLCQPTGGRARLTEGCSFRRKGD 149

[Close]
BLAST of CcUC06G111060 vs. NCBI nr
Match: XP_006295333.1 (40S ribosomal protein S27-2 [Capsella rubella] >EOA28231.1 hypothetical protein CARUB_v10024423mg [Capsella rubella])

HSP 1 Score: 181.0 bits (458), Expect = 4.3e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKAKLTEGCSFRRKGD 86

[Close]
BLAST of CcUC06G111060 vs. NCBI nr
Match: XP_022953224.1 (uncharacterized protein LOC111455834 [Cucurbita moschata])

HSP 1 Score: 181.0 bits (458), Expect = 4.3e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 124 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 183

Query: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 87
           CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 184 CQTVLCQPTGGRARLTEGCSFRRKGD 209

[Close]
BLAST of CcUC06G111060 vs. NCBI nr
Match: XP_002512685.1 (40S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal protein S27-2 [Ricinus communis] >XP_004143769.1 40S ribosomal protein S27-2 [Cucumis sativus] >XP_008465377.1 PREDICTED: 40S ribosomal protein S27-2-like [Cucumis melo] >XP_010028919.1 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_010057712.1 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_012078870.1 40S ribosomal protein S27-2 [Jatropha curcas] >XP_018829355.1 40S ribosomal protein S27-2 [Juglans regia] >XP_021660002.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_021680473.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_022141357.1 40S ribosomal protein S27-2 [Momordica charantia] >XP_022939288.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022952540.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022990942.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_022993712.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_023524061.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023548719.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023549571.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023872417.1 40S ribosomal protein S27-2 [Quercus suber] >XP_030450730.1 40S ribosomal protein S27-2 [Syzygium oleosum] >XP_030452017.1 40S ribosomal protein S27-2 [Syzygium oleosum] >XP_030513362.1 40S ribosomal protein S27-2 [Rhodamnia argentea] >XP_030956657.1 40S ribosomal protein S27-2 [Quercus lobata] >XP_031276672.1 40S ribosomal protein S27-2 [Pistacia vera] >XP_031276714.1 40S ribosomal protein S27-2 [Pistacia vera] >XP_038906694.1 40S ribosomal protein S27-2-like [Benincasa hispida] >XP_041012643.1 40S ribosomal protein S27-2 [Juglans microcarpa x Juglans regia] >XP_042982589.1 40S ribosomal protein S27-2 [Carya illinoinensis] >KAA0066103.1 Ribosomal protein S27e [Cucumis melo var. makuwa] >KAF3943728.1 hypothetical protein CMV_029739 [Castanea mollissima] >KAF8013305.1 hypothetical protein BT93_I1220 [Corymbia citriodora subsp. variegata] >KAG6579093.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014613.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.0 bits (458), Expect = 4.3e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of CcUC06G111060 vs. ExPASy Swiss-Prot
Match: Q9M2F1 (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 180.6 bits (457), Expect = 7.3e-45
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]
BLAST of CcUC06G111060 vs. ExPASy Swiss-Prot
Match: O64650 (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.6e-42
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]
BLAST of CcUC06G111060 vs. ExPASy Swiss-Prot
Match: Q96564 (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-41
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1  MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]
BLAST of CcUC06G111060 vs. ExPASy Swiss-Prot
Match: Q8L953 (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 167.9 bits (424), Expect = 4.9e-41
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]
BLAST of CcUC06G111060 vs. ExPASy Swiss-Prot
Match: P47903 (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.6e-37
Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1  MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          C +VLC PTG   +LTEGCSFRRK D
Sbjct: 61 CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]
BLAST of CcUC06G111060 vs. ExPASy TrEMBL
Match: A0A5D3DLW4 (40S ribosomal protein S27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001830 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]
BLAST of CcUC06G111060 vs. ExPASy TrEMBL
Match: E5GB53 (40S ribosomal protein S27 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]
BLAST of CcUC06G111060 vs. ExPASy TrEMBL
Match: A0A0A0K9G0 (40S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119

Query: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 87
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]
BLAST of CcUC06G111060 vs. ExPASy TrEMBL
Match: A0A1S3CCJ2 (40S ribosomal protein S27 OS=Cucumis melo OX=3656 GN=LOC103498897 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]
BLAST of CcUC06G111060 vs. ExPASy TrEMBL
Match: A0A6J1JTM3 (40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.1e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of CcUC06G111060 vs. TAIR 10
Match: AT3G61110.1 (ribosomal protein S27 )

HSP 1 Score: 180.6 bits (457), Expect = 5.2e-46
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]
BLAST of CcUC06G111060 vs. TAIR 10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 170.6 bits (431), Expect = 5.4e-43
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]
BLAST of CcUC06G111060 vs. TAIR 10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 167.9 bits (424), Expect = 3.5e-42
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]
BLAST of CcUC06G111060 vs. TAIR 10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 151.4 bits (381), Expect = 3.4e-37
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQ VLCQPTGG+AKLT GCSFR+  D
Sbjct: 61 CQNVLCQPTGGKAKLTVGCSFRKLTD 86

The following BLAST results are available for this feature:
BLAST of CcUC06G111060 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008459925.11.9e-42100.00PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo] >XP_011656784.1 40S riboso... [more]
XP_022991567.14.3e-4298.8440S ribosomal protein S27-2-like [Cucurbita maxima][more]
XP_006295333.14.3e-4298.8440S ribosomal protein S27-2 [Capsella rubella] >EOA28231.1 hypothetical protein ... [more]
XP_022953224.14.3e-4298.84uncharacterized protein LOC111455834 [Cucurbita moschata][more]
XP_002512685.14.3e-4298.8440S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal pro... [more]
BLAST of CcUC06G111060 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M2F17.3e-4597.6740S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2[more]
O646507.6e-4294.0540S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1[more]
Q965641.7e-4193.0240S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2[more]
Q8L9534.9e-4192.8640S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2[more]
P479039.6e-3783.7240S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=... [more]
BLAST of CcUC06G111060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DLW49.3e-43100.0040S ribosomal protein S27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
E5GB539.3e-43100.0040S ribosomal protein S27 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
A0A0A0K9G09.3e-43100.0040S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1[more]
A0A1S3CCJ29.3e-43100.0040S ribosomal protein S27 OS=Cucumis melo OX=3656 GN=LOC103498897 PE=3 SV=1[more]
A0A6J1JTM32.1e-4298.8440S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1[more]
BLAST of CcUC06G111060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G61110.15.2e-4697.67ribosomal protein S27 [more]
AT2G45710.15.4e-4394.05Zinc-binding ribosomal protein family protein [more]
AT5G47930.13.5e-4292.86Zinc-binding ribosomal protein family protein [more]
AT3G61111.13.4e-3782.56Zinc-binding ribosomal protein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000592Ribosomal protein S27PFAMPF01667Ribosomal_S27ecoord: 30..84
e-value: 1.9E-27
score: 94.7
IPR000592Ribosomal protein S27PANTHERPTHR1159440S RIBOSOMAL PROTEIN S27coord: 2..85
IPR000592Ribosomal protein S27PROSITEPS01168RIBOSOMAL_S27Ecoord: 38..70
IPR000592Ribosomal protein S27HAMAPMF_00371Ribosomal_S27ecoord: 24..84
score: 16.744337
IPR023407Ribosomal protein S27, zinc-binding domain superfamilyGENE3D2.20.25.100coord: 5..85
e-value: 3.0E-49
score: 166.9
NoneNo IPR availablePANTHERPTHR11594:SF740S RIBOSOMAL PROTEIN S27-RELATEDcoord: 2..85
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 30..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G111060.1CcUC06G111060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0042788 polysomal ribosome
cellular_component GO:0005840 ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome