CcUC05G109230 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G109230
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	auxin-regulated gene involved in organ size
Location	CicolChr05: 35910945 .. 35911142 (-)
RNA-Seq Expression	CcUC05G109230
Synteny	CcUC05G109230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACGTTGCTTCAACTTAGTGTCCGTTTTCGTCCTCGCCGCCGTTGCGGTTTCCATGATCGTTCTGCCCTTGGTTCTTCCGCCGCTGCCTCCGCCACCGCTTGTGTTTCTCTTCTTTCCAGTTGGAATCATGGCGGCGCTTCTTCTCCTCGCTTTTTCCCCCTCCGATGTCGGCGCCGGGAACGTCTTTGTATGA

mRNA sequence

ATGGTACGTTGCTTCAACTTAGTGTCCGTTTTCGTCCTCGCCGCCGTTGCGGTTTCCATGATCGTTCTGCCCTTGGTTCTTCCGCCGCTGCCTCCGCCACCGCTTGTGTTTCTCTTCTTTCCAGTTGGAATCATGGCGGCGCTTCTTCTCCTCGCTTTTTCCCCCTCCGATGTCGGCGCCGGGAACGTCTTTGTATGA

Coding sequence (CDS)

ATGGTACGTTGCTTCAACTTAGTGTCCGTTTTCGTCCTCGCCGCCGTTGCGGTTTCCATGATCGTTCTGCCCTTGGTTCTTCCGCCGCTGCCTCCGCCACCGCTTGTGTTTCTCTTCTTTCCAGTTGGAATCATGGCGGCGCTTCTTCTCCTCGCTTTTTCCCCCTCCGATGTCGGCGCCGGGAACGTCTTTGTATGA

Protein sequence

MVRCFNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGAGNVFV

Homology

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BLAST of CcUC05G109230 vs. NCBI nr
Match: KAG6601123.1 (Transcription factor IIIA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 2.8e-17
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MVRCFNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
           MVRCFNLVS+FVLAAVAVSM+VL LVLPPLPPPP+V LFFPVG+MAALL+LAFSPSDVG 
Sbjct: 321 MVRCFNLVSIFVLAAVAVSMVVLRLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSDVGV 380

Query: 61  GN 63
            N
Sbjct: 381 DN 382

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BLAST of CcUC05G109230 vs. NCBI nr
Match: XP_007148923.1 (hypothetical protein PHAVU_005G025500g [Phaseolus vulgaris] >ESW20917.1 hypothetical protein PHAVU_005G025500g [Phaseolus vulgaris])

HSP 1 Score: 87.0 bits (214), Expect = 6.3e-14
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MVRCFNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
          MVRCF+L SV +LAA+A SM+VLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD G 
Sbjct: 1  MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD-GH 60

Query: 61 GNVF 65
          G V+
Sbjct: 61 GVVY 63

[Close]

BLAST of CcUC05G109230 vs. NCBI nr
Match: KAG2372512.1 (uncharacterized protein HKW66_Vig0206190 [Vigna angularis] >KOM42438.1 hypothetical protein LR48_Vigan05g004200 [Vigna angularis] >BAT93370.1 hypothetical protein VIGAN_07232000 [Vigna angularis var. angularis])

HSP 1 Score: 87.0 bits (214), Expect = 6.3e-14
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1   MVRCFNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
           MVRCF+L SV +LAA+A SM+VLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD G 
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD-GN 160

Query: 61  GNVF 65
           G V+
Sbjct: 161 GVVY 163

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BLAST of CcUC05G109230 vs. NCBI nr
Match: KAF5742459.1 (putative transmembrane protein [Tripterygium wilfordii])

HSP 1 Score: 87.0 bits (214), Expect = 6.3e-14
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1  MVRCFNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
          MVRCF++ SV VLAAVA SM+VLPL+LPPLPPPPL+ LFFPVGIM AL+ LAFSP ++  
Sbjct: 1  MVRCFSIGSVIVLAAVAASMVVLPLILPPLPPPPLMLLFFPVGIMVALVFLAFSPDEITR 60

Query: 61 GNVFV 66
          GNV V
Sbjct: 61 GNVVV 65

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BLAST of CcUC05G109230 vs. NCBI nr
Match: RZB80655.1 (hypothetical protein D0Y65_030376 [Glycine soja])

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-13
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   MVRCFNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSD 58
           M RCF L SV VLAA+A SM+VLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD
Sbjct: 86  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 142

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BLAST of CcUC05G109230 vs. ExPASy Swiss-Prot
Match: Q6NMD6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3702 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 5   FNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGAGNVF 64
           F+L S+F+L  +  S+++LPLVLPPLPPPP + L  P+GIM  L++LAF PS     N  
Sbjct: 65  FSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPSSHSNANTD 124

Query: 65  V 66
           V
Sbjct: 125 V 125

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BLAST of CcUC05G109230 vs. ExPASy Swiss-Prot
Match: C7SFP6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis OX=51351 GN=ARGOS PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 3.5e-07
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 5   FNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPS 57
           F+L S+ +L  +  S+++LPLVLPPLPPPP + L  P+GIM  L++LAF PS
Sbjct: 72  FSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of CcUC05G109230 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.5e-07
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 5   FNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPS 57
           F+L S+ VL  +  S+++LPL+LPPLPPPP + L  P+GIM  L++LAF PS
Sbjct: 71  FSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of CcUC05G109230 vs. ExPASy Swiss-Prot
Match: Q7X6L2 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica OX=39947 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-05
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 5   FNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGAGN 63
           F++ S+ +L  V  S+++LPLVLPPLPPPP + +  PV ++  LL LAF P+   + +
Sbjct: 100 FSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPTTTSSSS 157

[Close]

BLAST of CcUC05G109230 vs. ExPASy TrEMBL
Match: A0A7J7D881 (Putative transmembrane protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW09G00507 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1  MVRCFNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
          MVRCF++ SV VLAAVA SM+VLPL+LPPLPPPPL+ LFFPVGIM AL+ LAFSP ++  
Sbjct: 1  MVRCFSIGSVIVLAAVAASMVVLPLILPPLPPPPLMLLFFPVGIMVALVFLAFSPDEITR 60

Query: 61 GNVFV 66
          GNV V
Sbjct: 61 GNVVV 65

[Close]

BLAST of CcUC05G109230 vs. ExPASy TrEMBL
Match: A0A0L9UI81 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g004200 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1   MVRCFNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
           MVRCF+L SV +LAA+A SM+VLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD G 
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD-GN 160

Query: 61  GNVF 65
           G V+
Sbjct: 161 GVVY 163

[Close]

BLAST of CcUC05G109230 vs. ExPASy TrEMBL
Match: A0A0S3SKI1 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G232000 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1   MVRCFNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
           MVRCF+L SV +LAA+A SM+VLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD G 
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD-GN 160

Query: 61  GNVF 65
           G V+
Sbjct: 161 GVVY 163

[Close]

BLAST of CcUC05G109230 vs. ExPASy TrEMBL
Match: V7BSD6 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G025500g PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MVRCFNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
          MVRCF+L SV +LAA+A SM+VLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD G 
Sbjct: 1  MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD-GH 60

Query: 61 GNVF 65
          G V+
Sbjct: 61 GVVY 63

[Close]

BLAST of CcUC05G109230 vs. ExPASy TrEMBL
Match: K7K5P8 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_11G156100 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1  MVRCFNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSD 58
          M RCF L SV VLAA+A SM+VLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD
Sbjct: 1  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 57

[Close]

BLAST of CcUC05G109230 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 56.6 bits (135), Expect = 8.6e-09
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 5   FNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGAGNVF 64
           F+L S+F+L  +  S+++LPLVLPPLPPPP + L  P+GIM  L++LAF PS     N  
Sbjct: 65  FSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPSSHSNANTD 124

Query: 65  V 66
           V
Sbjct: 125 V 125

[Close]

BLAST of CcUC05G109230 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-08
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 5   FNLVSVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPS 57
           F+L S+ VL  +  S+++LPL+LPPLPPPP + L  P+GIM  L++LAF PS
Sbjct: 71  FSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of CcUC05G109230 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 4.9e-04
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 9  SVFVLAAVAVSMIVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSD 58
          SV +L  +++ +++LP  LPPLPPPP   L  P+ +M  L+ LAFSPS+
Sbjct: 29 SVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSN 77

The following BLAST results are available for this feature:

BLAST of CcUC05G109230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601123.1	2.8e-17	85.48	Transcription factor IIIA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_007148923.1	6.3e-14	78.13	hypothetical protein PHAVU_005G025500g [Phaseolus vulgaris] >ESW20917.1 hypothet...	[more]
KAG2372512.1	6.3e-14	78.13	uncharacterized protein HKW66_Vig0206190 [Vigna angularis] >KOM42438.1 hypotheti...	[more]
KAF5742459.1	6.3e-14	72.31	putative transmembrane protein [Tripterygium wilfordii]	[more]
RZB80655.1	3.2e-13	82.46	hypothetical protein D0Y65_030376 [Glycine soja]	[more]

BLAST of CcUC05G109230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NMD6	1.2e-07	50.82	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3...	[more]
C7SFP6	3.5e-07	53.85	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
Q8RXL7	3.5e-07	53.85	ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1	[more]
Q7X6L2	3.3e-05	43.10	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]

BLAST of CcUC05G109230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7D881	3.1e-14	72.31	Putative transmembrane protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW09...	[more]
A0A0L9UI81	3.1e-14	78.13	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g004200 PE...	[more]
A0A0S3SKI1	3.1e-14	78.13	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G...	[more]
V7BSD6	3.1e-14	78.13	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G025500g PE=4 ...	[more]
K7K5P8	1.5e-13	82.46	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_11G156100 PE=4 SV=1	[more]

BLAST of CcUC05G109230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59900.1	8.6e-09	50.82	auxin-regulated gene involved in organ size	[more]
AT2G44080.1	2.5e-08	53.85	ARGOS-like	[more]
AT2G41230.1	4.9e-04	46.94	unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38928:SF5	PROTEIN, PUTATIVE-RELATED	coord: 1..60
None	No IPR available	PANTHER	PTHR38928	ARGOS7	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G109230.1	CcUC05G109230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane