CcUC05G108750 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G108750
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionCobyric acid synthase
LocationCicolChr05: 35495140 .. 35496949 (+)
RNA-Seq ExpressionCcUC05G108750
SyntenyCcUC05G108750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGTCAATCATCTTTGCATAGAAATAAAGGGGAAAAAATCTAGCCCCATTTGCCAACCTTTTTTTCTTTTAGAAATTCAAAATATGAACTCTTGCTTTCTAACTCTTATTTACTTTTTACTAATATTTTAAAAAATCAAATCAGTTTTTAAAAACTAACGTATGTTTGGTAATAATTTTATTTGTTAGTTTTAAAAATTAACTCTATTTCTTTCTTTCTTTTTTTTTTTTTATAATGATTTGCATATTCTTTAAATATAATAGTTGAATTTATTGCCAAATTTCAAAGACAAAAACAAATCTTTAAAAATTATTTTTTTTAGTTTTTAAAATTTGGCTTGATTTTTTAAACCATCGGAAAAAACTAGATAACAAATAAAGAGATTTGGAGGTGAGAGTAGTGTTTATAGCCTTAATTTTAAAAAACAAAAACAATAAACCAAATAGTTACCAAATGAAGCTAAATAAATAATTTTTATTTTTTTTTAATTTTAAATAATAATTCAATGCTTATTTCATAAATATGTTAAAATATAATTAATAATTTGAGTAATAACAAAAATAAATTTAAAAAATATTAAATTCTAAATTTAATTTCTATAATTTGAAAACAATTAGAATTTAGTTCTATAATTTAGGATTATAATTCATTTTATATGATACGATAAAACCTCCGTACATAACTCTTTTGTCATTTTCTTTTTTAACAAAATACAATAGAGACTAACTTTGACTTTAAAAGAATTATGTGAATCGTAATTTAACATTTAAAAAACCACAAAAATAAAATTAAAAGATAAAATGGTTAAGAACCAACCTTGTAAATCATTCAAGTCCTTCGTTTCCTCACAGTTTCTTTGAGCGTAAGAACCGAGTTCTAGAAGCAATTTCTTCAGAGTCGCGTACGACGAACCGCCGTCCTCCACCGCCCGCCGGGCAATCATCCCCAACTCTCCGACCCTTTCTCTCGCCTTTTGTCCTCCTTCTCCGACCATCGATTCTCTCACACTTGCACTGATTTTTTCCCGAGAAACAAACAGATCCCCATTTTCCTCTCTCTCCATCCCAATCGCAATCCCTAGCCCTTCCACCACATATTTCGCATTCAGCTTCTGCTCCGCCGTCATCGGCCACGCCAGAATCGGCACCGCCGCCGCCAAACTCTCCGTCACCGAATTCCACCCGCAGTGGCTCAGAAACCCCCCAATCGCGCTGTGAAATAGCACCCCAATTTGCTCTACAAACCTCCTCACAATCATCCCTTTTGACCCAATTTCTTTCGGTGCACACCAAGTGTTCGCCGAATGACCAGCACAAATGGGCACCCGGATTCCTCCAATCCAAGCGCCACAGCATCCAGCTGGGCATCGGTTAGCACCGCCTGCGTCCCAAACGCCGCGTATATCACCGGCGATGCCGTCTCCGCCTCCGCCGCACGTGCGTCAAGCCAGTTCATTAAGGAAATAGTATCGTCTTCGTTGTGATGATTGGTGGTATCTTTTGATGCGTTTGTTTGTTATCCATAGAGAGAAGTTGGACCAATACACCAAGCTTTCGCCCCATTTGAGTAAAAGGACTCCAATTGCGGAATGTGGTCGATTTCAAGCTCGAGGAAGCTATTGACGATGACCCCCCAACTCTGCAAGTCAGCTTCCTCTGCCTCCCCCATGAATTTGCTGAATGGGTTAATGTCAGTGTTCGGCGGTATATTGACGTCGGGGACATCAGCAACCGTTACATTGAACGGCAAATTACGCAAAAGCCGGTGGAGAAGATCAGAGATCGAGGAAGAAGAAGCTGTGTAA

mRNA sequence

ATGGAAATAGTCGCGTACGACGAACCGCCGTCCTCCACCGCCCGCCGGGCAATCATCCCCAACTCTCCGACCCTTTCTCTCGCCTTTTGTCCTCCTTCTCCGACCATCGATTCTCTCACACTTGCACTGATTTTTTCCCGAGAAACAAACAGATCCCCATTTTCCTCTCTCTCCATCCCAATCGCAATCCCTAGCCCTTCCACCACATATTTCGCATTCAGCTTCTGCTCCGCCGTCATCGGCCACGCCAGAATCGGCACCGCCGCCGCCAAACTCTCCGTCACCGAATTCCACCCGCAGTGGCTCAGAAACCCCCCAATCGCGCTTGTTCGCCGAATGACCAGCACAAATGGGCACCCGGATTCCTCCAATCCAAGCGCCACAGCATCCAGCTGGGCATCGGTTAGCACCGCCTGCGTCCCAAACGCCGCGTATATCACCGGCGATGCCGTCTCCGCCTCCGCCGCACTGTTCGGCGGTATATTGACGTCGGGGACATCAGCAACCGTTACATTGAACGGCAAATTACGCAAAAGCCGGTGGAGAAGATCAGAGATCGAGGAAGAAGAAGCTGTGTAA

Coding sequence (CDS)

ATGGAAATAGTCGCGTACGACGAACCGCCGTCCTCCACCGCCCGCCGGGCAATCATCCCCAACTCTCCGACCCTTTCTCTCGCCTTTTGTCCTCCTTCTCCGACCATCGATTCTCTCACACTTGCACTGATTTTTTCCCGAGAAACAAACAGATCCCCATTTTCCTCTCTCTCCATCCCAATCGCAATCCCTAGCCCTTCCACCACATATTTCGCATTCAGCTTCTGCTCCGCCGTCATCGGCCACGCCAGAATCGGCACCGCCGCCGCCAAACTCTCCGTCACCGAATTCCACCCGCAGTGGCTCAGAAACCCCCCAATCGCGCTTGTTCGCCGAATGACCAGCACAAATGGGCACCCGGATTCCTCCAATCCAAGCGCCACAGCATCCAGCTGGGCATCGGTTAGCACCGCCTGCGTCCCAAACGCCGCGTATATCACCGGCGATGCCGTCTCCGCCTCCGCCGCACTGTTCGGCGGTATATTGACGTCGGGGACATCAGCAACCGTTACATTGAACGGCAAATTACGCAAAAGCCGGTGGAGAAGATCAGAGATCGAGGAAGAAGAAGCTGTGTAA

Protein sequence

MEIVAYDEPPSSTARRAIIPNSPTLSLAFCPPSPTIDSLTLALIFSRETNRSPFSSLSIPIAIPSPSTTYFAFSFCSAVIGHARIGTAAAKLSVTEFHPQWLRNPPIALVRRMTSTNGHPDSSNPSATASSWASVSTACVPNAAYITGDAVSASAALFGGILTSGTSATVTLNGKLRKSRWRRSEIEEEEAV
Homology
BLAST of CcUC05G108750 vs. NCBI nr
Match: VVV75337.1 (unnamed protein product [Nymphaea colorata])

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-10
Identity = 60/171 (35.09%), Postives = 80/171 (46.78%), Query Frame = 0

Query: 7   DEPPSSTARRAIIPNSPTLSLAFCPPSPTIDSLTLALIFSRETNRSPFSSLSIPIAIPSP 66
           ++P   TA  A  P S  L+ A  P SP+I S TL L  SR T  +   S+   + IP+P
Sbjct: 8   EDPLGPTALFAAQPISIALARARRPSSPSISSTTLPLTVSRSTTPTRTRSMGATVRIPAP 67

Query: 67  --STTYFAFSFCSAVIGHARIGTAAAKLSVTEFHPQWLRNPPIA---------------- 126
             STT F F+  SA++G   +GT A +LS TEF PQ ++ PP A                
Sbjct: 68  SSSTTIFWFAVWSAIMGQVNMGTPAERLSKTEFQPQCVKKPPTAGWDSISHCGVHSLNTS 127

Query: 127 ---------------LVRRMTSTNGHPDSSNPSATASSWASVSTACVPNAA 145
                          +    TSTNG P +S+P A +  W S + ACVP  A
Sbjct: 128 PLPARRSSSPSGANHVFDLTTSTNGQPLASSPHAISVCWLSETGACVPKEA 178

BLAST of CcUC05G108750 vs. NCBI nr
Match: THU63537.1 (hypothetical protein C4D60_Mb01t16830 [Musa balbisiana])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 49/115 (42.61%), Postives = 62/115 (53.91%), Query Frame = 0

Query: 7   DEPPSSTARRAIIPNSPTLSLAFCPPSPTIDSLTLALIFSRETNRSPFSSLSIPIAIPSP 66
           DEPPS +A  A+   +  LSL+  P S +I+  TLA   S +T+   + S++    I S 
Sbjct: 89  DEPPSLSASTALSFIAAVLSLSCRPASDSINQRTLASTSSADTSSPSYPSIATASRISSV 148

Query: 67  STTYFAFSFCSAVIGHARIGTAAAKLSVTEFHPQWLRNPPIALVRRMTSTNGHPD 122
             T F   FCSA  GH  IGT+A   S TEFHPQW+  PP  L    TST G  D
Sbjct: 149 RNTLFI--FCSAYSGHPTIGTSATIASSTEFHPQWVTKPPTEL-WLSTSTCGAQD 200

BLAST of CcUC05G108750 vs. NCBI nr
Match: CAB3490207.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-08
Identity = 50/112 (44.64%), Postives = 63/112 (56.25%), Query Frame = 0

Query: 21  NSPTLSLAFCP-PSPTIDSLTLALIFSRETNRSPFSSLSIPIAIPSPSTTYFAFSFCSAV 80
           +S TL+    P PSP I SLT A IFS      PF S ++ IA P+PS +  AF  CSA 
Sbjct: 2   DSATLARTAAPRPSPAITSLTTAAIFS-----LPFDSDTL-IAAPTPSDSITAFCRCSAK 61

Query: 81  IGHARIGTAAAKLSVTEFHPQWLRNPPIALVRRMTSTNGHPDSSNPSATASS 132
            GHA IGT   +LS TEFHPQ +RNPP+A          H  ++ P++   S
Sbjct: 62  SGHATIGTPYTRLSSTEFHPQCVRNPPVAGWDSTFICGAHDGTTRPTSLVLS 107

BLAST of CcUC05G108750 vs. NCBI nr
Match: KAF4390650.1 (hypothetical protein G4B88_015540 [Cannabis sativa])

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-07
Identity = 47/100 (47.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query: 4   VAYDEPPSSTARRAIIPNSPTLSLAFCPPSPTIDSLTLALIFSRETNRSPFSSLSIPIAI 63
           V++D+PP STA  AI  NS    L   P SP+I+S T+ L  S  T   PF+  S  + +
Sbjct: 11  VSHDDPPFSTALCAITANSSAFFLTSFPTSPSINSFTILLTSSLFT--IPFNDPSQLLTL 70

Query: 64  PS---PSTTYFAFSFCSAVIGHARIGTAAAKLSVTEFHPQ 101
                 S T FAF  CSA+IG  RIGT A KLS TEF PQ
Sbjct: 71  TPTLISSATIFAFIGCSAIIGKPRIGTPALKLSTTEFQPQ 108

BLAST of CcUC05G108750 vs. NCBI nr
Match: CAB3470308.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-07
Identity = 65/167 (38.92%), Postives = 84/167 (50.30%), Query Frame = 0

Query: 7   DEPPSSTARRAIIPNSPTLSLAFC-PPSPTIDSLTLALIFSRETNRSPFSSLSIP----I 66
           D PPS TA  A   +S  L+  +   P P    L  A   +R T+ +  +S S P     
Sbjct: 13  DAPPSLTAAAAASASSFALAATWAHRPRPFPFPLRTASSSTRATSSAAGASWSPPQLTGT 72

Query: 67  AIPSPSTTYFAFSFCSAVIGHARIGTAAAKLSVTEFHPQWLRNPPIALVRRMTSTNGHPD 126
           A P+ ST+  AF+  SAVIGHA IGT AA+ S TEFHPQ + N P AL R   +   HP 
Sbjct: 73  AAPASSTSSRAFTNWSAVIGHASIGTPAAQASSTEFHPQCVTNHPTALCRSAATCGAHPR 132

Query: 127 SSNP-----SATASSWASVSTACVP----NAAYITGDAVSASAALFG 160
            + P     +AT SS  S S    P    NA  +   AV+++AA  G
Sbjct: 133 ITRPLPPAAAATRSSNPSGSITVGPVAHTNATPLRSSAVASAAACGG 179

BLAST of CcUC05G108750 vs. ExPASy TrEMBL
Match: A0A5K0YDP1 (Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS7708 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 60/171 (35.09%), Postives = 80/171 (46.78%), Query Frame = 0

Query: 7   DEPPSSTARRAIIPNSPTLSLAFCPPSPTIDSLTLALIFSRETNRSPFSSLSIPIAIPSP 66
           ++P   TA  A  P S  L+ A  P SP+I S TL L  SR T  +   S+   + IP+P
Sbjct: 8   EDPLGPTALFAAQPISIALARARRPSSPSISSTTLPLTVSRSTTPTRTRSMGATVRIPAP 67

Query: 67  --STTYFAFSFCSAVIGHARIGTAAAKLSVTEFHPQWLRNPPIA---------------- 126
             STT F F+  SA++G   +GT A +LS TEF PQ ++ PP A                
Sbjct: 68  SSSTTIFWFAVWSAIMGQVNMGTPAERLSKTEFQPQCVKKPPTAGWDSISHCGVHSLNTS 127

Query: 127 ---------------LVRRMTSTNGHPDSSNPSATASSWASVSTACVPNAA 145
                          +    TSTNG P +S+P A +  W S + ACVP  A
Sbjct: 128 PLPARRSSSPSGANHVFDLTTSTNGQPLASSPHAISVCWLSETGACVPKEA 178

BLAST of CcUC05G108750 vs. ExPASy TrEMBL
Match: A0A5K1BR22 (Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS15606 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.1e-10
Identity = 62/169 (36.69%), Postives = 80/169 (47.34%), Query Frame = 0

Query: 7   DEPPSSTARRAIIPNSPTLSLAFCPPSPTIDSLTLALIFSRETNRSPFSSLSIPIAIPSP 66
           D+P   TA  A  P S  L+LA  P SP+I S TL    SR T  +P   +++ I  P  
Sbjct: 18  DDPLGPTALFAAQPISIALALARQPSSPSISSTTLLPTVSRAT--TPPVGVTVRIPAPRS 77

Query: 67  STTYFAFSFCSAVIGHARIGTAAAKLSVTEFHPQWLRNPPIA------------------ 126
           STT F+F  CSA+ G   +GT A +LS+TEF PQ ++ PP A                  
Sbjct: 78  STTIFSFRGCSAMRGKVNMGTPAERLSMTEFQPQCVKKPPTAGWDKIINCGAHSFKSIPL 137

Query: 127 LVRR-------------MTSTNGHPDSSNPSATASSWASVSTACVPNAA 145
             RR              TSTNG P +S+P A + SW   + AC P  A
Sbjct: 138 PARRSSNPAGASHAFDLTTSTNGQPLASSPRAISVSWLFAAGACDPKEA 184

BLAST of CcUC05G108750 vs. ExPASy TrEMBL
Match: A0A4S8JMR6 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb01t16830 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.8e-09
Identity = 49/115 (42.61%), Postives = 62/115 (53.91%), Query Frame = 0

Query: 7   DEPPSSTARRAIIPNSPTLSLAFCPPSPTIDSLTLALIFSRETNRSPFSSLSIPIAIPSP 66
           DEPPS +A  A+   +  LSL+  P S +I+  TLA   S +T+   + S++    I S 
Sbjct: 89  DEPPSLSASTALSFIAAVLSLSCRPASDSINQRTLASTSSADTSSPSYPSIATASRISSV 148

Query: 67  STTYFAFSFCSAVIGHARIGTAAAKLSVTEFHPQWLRNPPIALVRRMTSTNGHPD 122
             T F   FCSA  GH  IGT+A   S TEFHPQW+  PP  L    TST G  D
Sbjct: 149 RNTLFI--FCSAYSGHPTIGTSATIASSTEFHPQWVTKPPTEL-WLSTSTCGAQD 200

BLAST of CcUC05G108750 vs. ExPASy TrEMBL
Match: A0A7J6H7U4 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_015540 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.7e-08
Identity = 47/100 (47.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query: 4   VAYDEPPSSTARRAIIPNSPTLSLAFCPPSPTIDSLTLALIFSRETNRSPFSSLSIPIAI 63
           V++D+PP STA  AI  NS    L   P SP+I+S T+ L  S  T   PF+  S  + +
Sbjct: 11  VSHDDPPFSTALCAITANSSAFFLTSFPTSPSINSFTILLTSSLFT--IPFNDPSQLLTL 70

Query: 64  PS---PSTTYFAFSFCSAVIGHARIGTAAAKLSVTEFHPQ 101
                 S T FAF  CSA+IG  RIGT A KLS TEF PQ
Sbjct: 71  TPTLISSATIFAFIGCSAIIGKPRIGTPALKLSTTEFQPQ 108

BLAST of CcUC05G108750 vs. ExPASy TrEMBL
Match: A0A2T7EKR2 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G026500 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-07
Identity = 49/112 (43.75%), Postives = 58/112 (51.79%), Query Frame = 0

Query: 5   AYDEPPSSTARRAIIPNSPTLSLAFCPPSPTIDSLTLALIFSRETNRSPFSSLSIPI--A 64
           A DEPPSSTA R     S   SLA  P SP   S   A   S  + + P   LS PI  A
Sbjct: 32  AADEPPSSTAFRHAAFISAARSLALLPSSPPPISARTARSSSAASTKLPL-LLSTPIATA 91

Query: 65  IPSPSTTYFAFSFCSAVIGHARIGTAAAKLSVTEFHPQWLRNPPIALVRRMT 115
            P+ +T+  AF  CSA  GH  IGT   +LS  EFHPQ +  PP A   R++
Sbjct: 92  APAAATSANAFRCCSAYSGHGAIGTPHQRLSRIEFHPQCVTKPPTAARARIS 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
VVV75337.13.3e-1035.09unnamed protein product [Nymphaea colorata][more]
THU63537.11.8e-0842.61hypothetical protein C4D60_Mb01t16830 [Musa balbisiana][more]
CAB3490207.13.1e-0844.64unnamed protein product [Digitaria exilis][more]
KAF4390650.11.2e-0747.00hypothetical protein G4B88_015540 [Cannabis sativa][more]
CAB3470308.11.5e-0738.92unnamed protein product [Digitaria exilis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5K0YDP11.6e-1035.09Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS7708 PE=4 SV=... [more]
A0A5K1BR226.1e-1036.69Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS15606 PE=4 SV... [more]
A0A4S8JMR68.8e-0942.61Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb01t16830 PE=3 SV=... [more]
A0A7J6H7U45.7e-0847.00Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_015540 PE=4 SV=1[more]
A0A2T7EKR23.7e-0743.75Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G02650... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G108750.1CcUC05G108750.1mRNA