CcUC05G107440 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G107440
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Photosystem II CP43 reaction center protein
Location	CicolChr05: 34417232 .. 34418684 (-)
RNA-Seq Expression	CcUC05G107440
Synteny	CcUC05G107440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTCACGGTGGTGGAGGAACTGGATCGAAAAAAGAGGGATTCCAGTTGTAAGATATCTAATGAAATCGTCGTTGGAATGGAGATCTCATTCAAAGAGAAAGATATCAAATATCTGGAGTTTCTTTTTGTATATTATATGGATGATCAGATCCACAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCCGAGGAAGAGGTGAAACATAATCAACTTGAATTCGGGACAACTATTCGAAATCTTAGTGAAAGACTGGATTTGTTATCTCATGTTTGCTTTTCGTGAAAAAATACCAATTGAGGTGGAGGGTTTCTTCAAACAACAAGGAGCTGGGTCAAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCTGTGGAAACCCTCTTTAATGGAACTTTGGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCTGGGAATGCCCGACTTATCAATTTATCCAGTAAACTACTGGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGTCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTTTAGGTTGGGGGGTAGGTCCTGGTGGGGAAGTTATAGACACCCTTCCTTACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCAGCTGTATTGGGTTTTGGCAGTATTTATCATGCACTTCTGGGCCCCGAGACCCTTGAAGAATCTTTTCCATTCTTCGATTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTCACTTAATTTTGTTAGGTATAGGTGTTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATGATATCTGGGCTCCGGGGGGAGGAGATGTAAGAAAAATTACCAACTTGACACTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGCGGAGAAGGGTGGATTGTTAGTGTGGACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCATTTGCCTGGGCTCGCTGCGCACTTGTATGGTTTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTGATGCATACGGTTCAAAAAAATAG

mRNA sequence

ATGGGGTTCACGGTGGTGGAGGAACTGGATCGAAAAAAGAGGGATTCCAGTTGTAAGATATCTAATGAAATCGTCGTTGGAATGGAGATCTCATTCAAAGAGAAAGATATCAAATATCTGGAGTTTCTTTTTGTATATTATATGGATGATCAGATCCACAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCCGAGGAAGAGGTTCTACCCTGTGGAAACCCTCTTTAATGGAACTTTGGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCTGGGAATGCCCGACTTATCAATTTATCCAGTAAACTACTGGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGTCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTTTAGGTTGGGGGGTAGGTCCTGGTGGGGAAGTTATAGACACCCTTCCTTACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCAGCTGTATTGGGTTTTGGCAGTATTTATCATGCACTTCTGGGCCCCGAGACCCTTGAAGAATCTTTTCCATTCTTCGATTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTCACTTAATTTTGTTAGGTATAGGTGTTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATGATATCTGGGCTCCGGGGGGAGGAGATGTAAGAAAAATTACCAACTTGACACTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGCGGAGAAGGGTGGATTGTTAGTGTGGACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCATTTGCCTGGGCTCGCTGCGCACTTGTATGGTTTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTGATGCATACGGTTCAAAAAAATAG

Coding sequence (CDS)

ATGGGGTTCACGGTGGTGGAGGAACTGGATCGAAAAAAGAGGGATTCCAGTTGTAAGATATCTAATGAAATCGTCGTTGGAATGGAGATCTCATTCAAAGAGAAAGATATCAAATATCTGGAGTTTCTTTTTGTATATTATATGGATGATCAGATCCACAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCCGAGGAAGAGGTTCTACCCTGTGGAAACCCTCTTTAATGGAACTTTGGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCTGGGAATGCCCGACTTATCAATTTATCCAGTAAACTACTGGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGTCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTTTAGGTTGGGGGGTAGGTCCTGGTGGGGAAGTTATAGACACCCTTCCTTACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCAGCTGTATTGGGTTTTGGCAGTATTTATCATGCACTTCTGGGCCCCGAGACCCTTGAAGAATCTTTTCCATTCTTCGATTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTCACTTAATTTTGTTAGGTATAGGTGTTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATGATATCTGGGCTCCGGGGGGAGGAGATGTAAGAAAAATTACCAACTTGACACTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGCGGAGAAGGGTGGATTGTTAGTGTGGACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCATTTGCCTGGGCTCGCTGCGCACTTGTATGGTTTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTGATGCATACGGTTCAAAAAAATAG

Protein sequence

MGFTVVEELDRKKRDSSCKISNEIVVGMEISFKEKDIKYLEFLFVYYMDDQIHKDHDWELFDRLSPRKRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWVGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAVLGFGSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGGVYDIWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFDAYGSKK

Homology

[Close]

BLAST of CcUC05G107440 vs. NCBI nr
Match: YP_009390805.1 (photosystem II CP43 chlorophyll apoprotein [Punica granatum] >ARV87268.1 photosystem II CP43 chlorophyll apoprotein [Punica granatum] >QDD68466.1 photosystem II CP43 chlorophyll apoprotein [Punica granatum] >QDD68550.1 photosystem II CP43 chlorophyll apoprotein [Punica granatum] >QDD68634.1 photosystem II CP43 chlorophyll apoprotein [Punica granatum] >QID57807.1 photosystem II 44 kDa protein [Punica granatum])

HSP 1 Score: 628.6 bits (1620), Expect = 3.5e-176
Identity = 300/314 (95.54%), Postives = 303/314 (96.50%), Query Frame = 0


Query: 64  LSPRKRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFW 123
           L  ++RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW
Sbjct: 4   LYSQRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFW 63

Query: 124 VGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSA 183
            GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSA
Sbjct: 64  AGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSA 123

Query: 184 VLGFGSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFG 243
           VLGFG IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFG
Sbjct: 124 VLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFG 183

Query: 244 GVYDIWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSI 303
           GVYD WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSI
Sbjct: 184 GVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSI 243

Query: 304 CILGGIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYG 363
           CILGGIWHILTKPFAWAR ALVW GEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYG
Sbjct: 244 CILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYG 303

Query: 364 PTGPEASQAQAFTF 378
           PTGPEASQAQAFTF
Sbjct: 304 PTGPEASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. NCBI nr
Match: YP_009502721.1 (photosystem II CP43 chlorophyll apoprotein [Paris thibetica] >YP_009502987.1 photosystem II CP43 chlorophyll apoprotein [Paris rugosa] >ASA68950.1 photosystem II CP43 chlorophyll apoprotein [Paris rugosa] >ASA69039.1 photosystem II CP43 chlorophyll apoprotein [Paris thibetica] >QJC13695.1 photosystem II CP43 chlorophyll apoprotein [Paris polyphylla])

HSP 1 Score: 628.6 bits (1620), Expect = 3.5e-176
Identity = 302/313 (96.49%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 65  SPRKRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWV 124
           SPR RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW 
Sbjct: 20  SPR-RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWA 79

Query: 125 GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAV 184
           GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAV
Sbjct: 80  GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAV 139

Query: 185 LGFGSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGG 244
           LGFG IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFGG
Sbjct: 140 LGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGG 199

Query: 245 VYDIWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSIC 304
           VYD WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSIC
Sbjct: 200 VYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSIC 259

Query: 305 ILGGIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 364
           ILGGIWHILTKPFAWAR ALVW GEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP
Sbjct: 260 ILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 319

Query: 365 TGPEASQAQAFTF 378
           TGPEASQAQAFTF
Sbjct: 320 TGPEASQAQAFTF 331

[Close]

BLAST of CcUC05G107440 vs. NCBI nr
Match: YP_009674657.1 (photosystem II CP43 chlorophyll apoprotein [Bennettiodendron brevipes] >YP_009728537.1 photosystem II CP43 chlorophyll apoprotein [Bennettiodendron leprosipes] >QFQ48971.1 photosystem II CP43 chlorophyll apoprotein [Memecylon ligustrifolium] >QUQ06925.1 photosystem II 43 kDa protein [Sauvagesia rhodoleuca] >QDC35205.1 photosystem II CP43 chlorophyll apoprotein [Bennettiodendron brevipes] >QIA95450.1 photosystem II CP43 chlorophyll apoprotein [Bennettiodendron leprosipes])

HSP 1 Score: 628.6 bits (1620), Expect = 3.5e-176
Identity = 302/313 (96.49%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 65  SPRKRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWV 124
           SPR RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW 
Sbjct: 6   SPR-RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWA 65

Query: 125 GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAV 184
           GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAV
Sbjct: 66  GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAV 125

Query: 185 LGFGSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGG 244
           LGFG IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFGG
Sbjct: 126 LGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGG 185

Query: 245 VYDIWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSIC 304
           VYD WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSIC
Sbjct: 186 VYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSIC 245

Query: 305 ILGGIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 364
           ILGGIWHILTKPFAWAR ALVW GEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP
Sbjct: 246 ILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 305

Query: 365 TGPEASQAQAFTF 378
           TGPEASQAQAFTF
Sbjct: 306 TGPEASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. NCBI nr
Match: YP_009048571.1 (photosystem II 44 kDa apoprotein (P6) [Paris verticillata] >YP_009145257.1 photosystem II 44 kDa apoprotein (P6) [Trillium decumbens] >YP_009343102.1 photosystem II 44 kDa apoprotein (P6) [Paris cronquistii] >YP_009343185.1 photosystem II 44 kDa apoprotein (P6) [Paris dunniana] >YP_009343268.1 photosystem II 44 kDa apoprotein (P6) [Paris fargesii] >YP_009343354.1 photosystem II 44 kDa apoprotein (P6) [Paris luquanensis] >YP_009343438.1 photosystem II 44 kDa apoprotein (P6) [Paris mairei] >YP_009343522.1 photosystem II 44 kDa apoprotein (P6) [Paris marmorata] >YP_009343606.1 photosystem II 44 kDa apoprotein (P6) [Paris polyphylla var. chinensis] >YP_009343690.1 photosystem II 44 kDa apoprotein (P6) [Paris polyphylla var. yunnanensis] >YP_009343774.1 photosystem II 44 kDa apoprotein (P6) [Paris vietnamensis] >YP_009343860.1 photosystem II 44 kDa apoprotein (P6) [Paris quadrifolia] >YP_009733914.1 photosystem II 44 kDa apoprotein (P6) [Paris birmanica] >YP_009734000.1 photosystem II 44 kDa apoprotein (P6) [Paris qiliangiana] >YP_009734086.1 photosystem II 44 kDa apoprotein (P6) [Paris yanchii] >YP_009734172.1 photosystem II 44 kDa apoprotein (P6) [Paris tengchongensis] >YP_009734258.1 photosystem II 44 kDa apoprotein (P6) [Paris xichouensis] >YP_009736360.1 photosystem II 44 kDa apoprotein (P6) [Paris forrestii] >YP_009736446.1 photosystem II 44 kDa apoprotein (P6) [Paris dulongensis] >YP_009736532.1 photosystem II 44 kDa apoprotein (P6) [Paris vaniotii] >YP_009736704.1 photosystem II 44 kDa apoprotein (P6) [Paris incompleta] >YP_009736872.1 photosystem II 44 kDa apoprotein (P6) [Paris daliensis] >YP_009736958.1 photosystem II 44 kDa apoprotein (P6) [Paris bashanensis] >YP_009737044.1 photosystem II 44 kDa apoprotein (P6) [Paris delavayi] >YP_009737130.1 photosystem II 44 kDa apoprotein (P6) [Paris undulata] >YP_009737216.1 photosystem II 44 kDa apoprotein (P6) [Paris polyphylla] >YP_009737302.1 photosystem II 44 kDa apoprotein (P6) [Paris axialis] >YP_009737388.1 photosystem II 44 kDa apoprotein (P6) [Paris caobangensis] >YP_009737474.1 photosystem II 44 kDa apoprotein (P6) [Paris tetraphylla] >YP_009912723.1 photosystem II 44 kDa apoprotein (P6) [Paris polyphylla var. emeiensis] >YP_009995562.1 photosystem II 44 kDa apoprotein (P6) [Paris liiana] >QHV38827.1 photosystem II 44 kDa apoprotein (P6) [Paris thibetica] >QHV38913.1 photosystem II 44 kDa apoprotein (P6) [Paris rugosa] >QHV40629.1 photosystem II 44 kDa apoprotein (P6) [Paris polyphylla var. stenophylla] >QJT43065.1 photosystem II CP43 chlorophyll apoprotein [Paris stigmatosa] >QVD39665.1 photosystem II CP43 chlorophyll apoprotein [Paris polyphylla var. alba] >QYF10196.1 photosystem II CP43 chlorophyll apoprotein [Paris caojianensis])

HSP 1 Score: 628.6 bits (1620), Expect = 3.5e-176
Identity = 302/313 (96.49%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 65  SPRKRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWV 124
           SPR RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW 
Sbjct: 6   SPR-RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWA 65

Query: 125 GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAV 184
           GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAV
Sbjct: 66  GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAV 125

Query: 185 LGFGSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGG 244
           LGFG IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFGG
Sbjct: 126 LGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGG 185

Query: 245 VYDIWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSIC 304
           VYD WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSIC
Sbjct: 186 VYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSIC 245

Query: 305 ILGGIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 364
           ILGGIWHILTKPFAWAR ALVW GEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP
Sbjct: 246 ILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 305

Query: 365 TGPEASQAQAFTF 378
           TGPEASQAQAFTF
Sbjct: 306 TGPEASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. NCBI nr
Match: YP_010048629.1 (photosystem II CP43 chlorophyll apoprotein [Quercus acuta] >QPK76998.1 photosystem II CP43 chlorophyll apoprotein [Quercus acuta])

HSP 1 Score: 628.2 bits (1619), Expect = 4.5e-176
Identity = 299/313 (95.53%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 65  SPRKRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWV 124
           S R+RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW 
Sbjct: 20  SLRRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWA 79

Query: 125 GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAV 184
           GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAV
Sbjct: 80  GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAV 139

Query: 185 LGFGSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGG 244
           LGFG IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKA+YFGG
Sbjct: 140 LGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKAIYFGG 199

Query: 245 VYDIWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSIC 304
           VYD WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSIC
Sbjct: 200 VYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSIC 259

Query: 305 ILGGIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 364
           ILGGIWHILTKPFAWAR ALVW GEAYLSYSLGAL+VFGFIACCFVWFNNTAYPSEFYGP
Sbjct: 260 ILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGP 319

Query: 365 TGPEASQAQAFTF 378
           TGPEASQAQAFTF
Sbjct: 320 TGPEASQAQAFTF 332

[Close]

BLAST of CcUC05G107440 vs. ExPASy Swiss-Prot
Match: Q2QD93 (Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC PE=3 SV=1)

HSP 1 Score: 627.9 bits (1618), Expect = 7.7e-179
Identity = 300/310 (96.77%), Postives = 301/310 (97.10%), Query Frame = 0


Query: 68  KRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWVGAM 127
           +RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW GAM
Sbjct: 8   RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM 67

Query: 128 NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAVLGF 187
           NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAVLGF
Sbjct: 68  NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGF 127

Query: 188 GSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGGVYD 247
           G IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFGGVYD
Sbjct: 128 GGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYD 187

Query: 248 IWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILG 307
            WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILG
Sbjct: 188 TWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILG 247

Query: 308 GIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP 367
           GIWHILTKPFAWAR ALVW GEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP
Sbjct: 248 GIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP 307

Query: 368 EASQAQAFTF 378
           EASQAQAFTF
Sbjct: 308 EASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. ExPASy Swiss-Prot
Match: Q14FG1 (Photosystem II CP43 reaction center protein OS=Populus alba OX=43335 GN=psbC PE=3 SV=1)

HSP 1 Score: 626.3 bits (1614), Expect = 2.3e-178
Identity = 298/310 (96.13%), Postives = 301/310 (97.10%), Query Frame = 0


Query: 68  KRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWVGAM 127
           +RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW GAM
Sbjct: 8   RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM 67

Query: 128 NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAVLGF 187
           NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAVLGF
Sbjct: 68  NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGF 127

Query: 188 GSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGGVYD 247
           G IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFGGVYD
Sbjct: 128 GGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYD 187

Query: 248 IWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILG 307
            WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICILG
Sbjct: 188 TWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILG 247

Query: 308 GIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP 367
           GIWHILTKPFAWAR ALVW GEAYLSYSLGAL+VFGFIACCFVWFNNTAYPSEFYGPTGP
Sbjct: 248 GIWHILTKPFAWARRALVWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGPTGP 307

Query: 368 EASQAQAFTF 378
           EASQAQAFTF
Sbjct: 308 EASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. ExPASy Swiss-Prot
Match: A4GYQ5 (Photosystem II CP43 reaction center protein OS=Populus trichocarpa OX=3694 GN=psbC PE=3 SV=1)

HSP 1 Score: 626.3 bits (1614), Expect = 2.3e-178
Identity = 298/310 (96.13%), Postives = 301/310 (97.10%), Query Frame = 0


Query: 68  KRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWVGAM 127
           +RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW GAM
Sbjct: 8   RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM 67

Query: 128 NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAVLGF 187
           NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAVLGF
Sbjct: 68  NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGF 127

Query: 188 GSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGGVYD 247
           G IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFGGVYD
Sbjct: 128 GGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYD 187

Query: 248 IWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILG 307
            WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICILG
Sbjct: 188 TWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILG 247

Query: 308 GIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP 367
           GIWHILTKPFAWAR ALVW GEAYLSYSLGAL+VFGFIACCFVWFNNTAYPSEFYGPTGP
Sbjct: 248 GIWHILTKPFAWARRALVWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGPTGP 307

Query: 368 EASQAQAFTF 378
           EASQAQAFTF
Sbjct: 308 EASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. ExPASy Swiss-Prot
Match: Q2L901 (Photosystem II CP43 reaction center protein OS=Gossypium hirsutum OX=3635 GN=psbC PE=3 SV=1)

HSP 1 Score: 625.9 bits (1613), Expect = 2.9e-178
Identity = 298/310 (96.13%), Postives = 300/310 (96.77%), Query Frame = 0


Query: 68  KRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWVGAM 127
           +RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW GAM
Sbjct: 8   RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM 67

Query: 128 NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAVLGF 187
           NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAVLGF
Sbjct: 68  NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGF 127

Query: 188 GSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGGVYD 247
           G IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFGGVYD
Sbjct: 128 GGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYD 187

Query: 248 IWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILG 307
            WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICI G
Sbjct: 188 TWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFG 247

Query: 308 GIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP 367
           GIWHILTKPFAWAR ALVW GEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP
Sbjct: 248 GIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP 307

Query: 368 EASQAQAFTF 378
           EASQAQAFTF
Sbjct: 308 EASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. ExPASy Swiss-Prot
Match: Q68S10 (Photosystem II CP43 reaction center protein OS=Panax ginseng OX=4054 GN=psbC PE=3 SV=1)

HSP 1 Score: 625.5 bits (1612), Expect = 3.8e-178
Identity = 297/310 (95.81%), Postives = 300/310 (96.77%), Query Frame = 0


Query: 68  KRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWVGAM 127
           +RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW G M
Sbjct: 8   RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGGM 67

Query: 128 NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAVLGF 187
           NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAVLGF
Sbjct: 68  NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGF 127

Query: 188 GSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGGVYD 247
           G IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFGGVYD
Sbjct: 128 GGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYD 187

Query: 248 IWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILG 307
            WAPGGGDVRKITNLTLSPS+IFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICILG
Sbjct: 188 TWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILG 247

Query: 308 GIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP 367
           GIWHILTKPFAWAR ALVW GEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP
Sbjct: 248 GIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP 307

Query: 368 EASQAQAFTF 378
           EASQAQAFTF
Sbjct: 308 EASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. ExPASy TrEMBL
Match: A0A6C0MSK8 (Photosystem II CP43 reaction center protein OS=Paris delavayi OX=374957 GN=psbC PE=3 SV=1)

HSP 1 Score: 628.6 bits (1620), Expect = 1.7e-176
Identity = 302/313 (96.49%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 65  SPRKRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWV 124
           SPR RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW 
Sbjct: 6   SPR-RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWA 65

Query: 125 GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAV 184
           GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAV
Sbjct: 66  GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAV 125

Query: 185 LGFGSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGG 244
           LGFG IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFGG
Sbjct: 126 LGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGG 185

Query: 245 VYDIWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSIC 304
           VYD WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSIC
Sbjct: 186 VYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSIC 245

Query: 305 ILGGIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 364
           ILGGIWHILTKPFAWAR ALVW GEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP
Sbjct: 246 ILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 305

Query: 365 TGPEASQAQAFTF 378
           TGPEASQAQAFTF
Sbjct: 306 TGPEASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. ExPASy TrEMBL
Match: A0A1L6V0Z2 (Photosystem II CP43 reaction center protein OS=Paris dunniana OX=374961 GN=psbC PE=3 SV=1)

HSP 1 Score: 628.6 bits (1620), Expect = 1.7e-176
Identity = 302/313 (96.49%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 65  SPRKRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWV 124
           SPR RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW 
Sbjct: 6   SPR-RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWA 65

Query: 125 GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAV 184
           GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAV
Sbjct: 66  GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAV 125

Query: 185 LGFGSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGG 244
           LGFG IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFGG
Sbjct: 126 LGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGG 185

Query: 245 VYDIWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSIC 304
           VYD WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSIC
Sbjct: 186 VYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSIC 245

Query: 305 ILGGIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 364
           ILGGIWHILTKPFAWAR ALVW GEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP
Sbjct: 246 ILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 305

Query: 365 TGPEASQAQAFTF 378
           TGPEASQAQAFTF
Sbjct: 306 TGPEASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. ExPASy TrEMBL
Match: A0A1L6V268 (Photosystem II CP43 reaction center protein OS=Paris marmorata OX=221257 GN=psbC PE=3 SV=1)

HSP 1 Score: 628.6 bits (1620), Expect = 1.7e-176
Identity = 302/313 (96.49%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 65  SPRKRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWV 124
           SPR RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW 
Sbjct: 6   SPR-RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWA 65

Query: 125 GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAV 184
           GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAV
Sbjct: 66  GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAV 125

Query: 185 LGFGSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGG 244
           LGFG IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFGG
Sbjct: 126 LGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGG 185

Query: 245 VYDIWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSIC 304
           VYD WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSIC
Sbjct: 186 VYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSIC 245

Query: 305 ILGGIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 364
           ILGGIWHILTKPFAWAR ALVW GEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP
Sbjct: 246 ILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 305

Query: 365 TGPEASQAQAFTF 378
           TGPEASQAQAFTF
Sbjct: 306 TGPEASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. ExPASy TrEMBL
Match: A0A1L6V167 (Photosystem II CP43 reaction center protein OS=Paris fargesii OX=83858 GN=psbC PE=3 SV=1)

HSP 1 Score: 628.6 bits (1620), Expect = 1.7e-176
Identity = 302/313 (96.49%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 65  SPRKRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWV 124
           SPR RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW 
Sbjct: 6   SPR-RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWA 65

Query: 125 GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAV 184
           GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAV
Sbjct: 66  GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAV 125

Query: 185 LGFGSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGG 244
           LGFG IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFGG
Sbjct: 126 LGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGG 185

Query: 245 VYDIWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSIC 304
           VYD WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSIC
Sbjct: 186 VYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSIC 245

Query: 305 ILGGIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 364
           ILGGIWHILTKPFAWAR ALVW GEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP
Sbjct: 246 ILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 305

Query: 365 TGPEASQAQAFTF 378
           TGPEASQAQAFTF
Sbjct: 306 TGPEASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. ExPASy TrEMBL
Match: A0A6C0MS60 (Photosystem II CP43 reaction center protein OS=Paris polyphylla var. emeiensis OX=2706224 GN=psbC PE=3 SV=1)

HSP 1 Score: 628.6 bits (1620), Expect = 1.7e-176
Identity = 302/313 (96.49%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 65  SPRKRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWV 124
           SPR RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW 
Sbjct: 6   SPR-RFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWA 65

Query: 125 GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAV 184
           GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAV
Sbjct: 66  GAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAV 125

Query: 185 LGFGSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGG 244
           LGFG IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLGIG FLLVFKALYFGG
Sbjct: 126 LGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGG 185

Query: 245 VYDIWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSIC 304
           VYD WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSIC
Sbjct: 186 VYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSIC 245

Query: 305 ILGGIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 364
           ILGGIWHILTKPFAWAR ALVW GEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP
Sbjct: 246 ILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGP 305

Query: 365 TGPEASQAQAFTF 378
           TGPEASQAQAFTF
Sbjct: 306 TGPEASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 616.7 bits (1589), Expect = 1.3e-176
Identity = 294/310 (94.84%), Postives = 297/310 (95.81%), Query Frame = 0


Query: 68  KRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGAHVAHAGLIVFWVGAM 127
           +RFY VETLFNGTLALAGRDQETTGFAWWAGNARLINLS KLLGAHVAHAGLIVFW GAM
Sbjct: 8   RRFYHVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM 67

Query: 128 NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTLPYFVSGVLHLISSAVLGF 187
           NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDT PYFVSGVLHLISSAVLGF
Sbjct: 68  NLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGF 127

Query: 188 GSIYHALLGPETLEESFPFFDYVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGGVYD 247
           G IYHALLGPETLEESFPFF YVWKDRNKMTTILGIHLILLG+G FLLVFKALYFGGVYD
Sbjct: 128 GGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAFLLVFKALYFGGVYD 187

Query: 248 IWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILG 307
            WAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICI G
Sbjct: 188 TWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFG 247

Query: 308 GIWHILTKPFAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP 367
           GIWHILTKPFAWAR ALVW GEAYLSYSL ALSV GFIACCFVWFNNTAYPSEFYGPTGP
Sbjct: 248 GIWHILTKPFAWARRALVWSGEAYLSYSLAALSVCGFIACCFVWFNNTAYPSEFYGPTGP 307

Query: 368 EASQAQAFTF 378
           EASQAQAFTF
Sbjct: 308 EASQAQAFTF 317

[Close]

BLAST of CcUC05G107440 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-20
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 12  KKRDSSCKISNEIVVGMEISFKEKDIKYLEFLFVYYMDDQIHKDHDWELFDRLSPRKR 70
           KKR   CKISNE V G++ISFKEKDIKYLEFLFVYYMDD I K HDWELFDRLSP KR
Sbjct: 187 KKRGFCCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLSPSKR 244

[Close]

BLAST of CcUC05G107440 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-20
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 12  KKRDSSCKISNEIVVGMEISFKEKDIKYLEFLFVYYMDDQIHKDHDWELFDRLSPRKR 70
           KKR   CKISNE V G++ISFKEKDIKYLEFLFVYYMDD I K HDWELFDRLSP KR
Sbjct: 187 KKRGFCCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLSPSKR 244

[Close]

BLAST of CcUC05G107440 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 83.6 bits (205), Expect = 3.9e-16
Identity = 76/294 (25.85%), Postives = 125/294 (42.52%), Query Frame = 0


Query: 92  GFAWWAGNARLINLSSKLLGAHVAHAGLIVFWVGAMNLFEVAHFVPE----KPMYEQGLI 151
           G  W+  +  ++N   +LL  H+ H  L+  W G+M L+E+A F P      PM+ QG+ 
Sbjct: 2   GLPWYRVHTVVLNDPGRLLAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMF 61

Query: 152 LLPHLATL-------GWGVGPGGEVIDTLPYFVSGV--LHLISSAVLGFGSIYHALLGPE 211
           ++P +  L       GW +  GG + +   +   GV   H++ S +    +I+H +    
Sbjct: 62  VIPFMTRLGITNSWGGWNI-TGGTITNPGLWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL 121

Query: 212 TLEESFPFFD-YVWKDRNKMTTILGIHLILLGIGVFLLVFKALYFGGVY--DIWAPGGGD 271
            +     F D    K    +  I GIHL L G+  F   F A +  G+Y   IW     D
Sbjct: 122 EI-----FCDERTGKPSLDLPKIFGIHLFLSGVACF--GFGAFHVTGLYGPGIWV---SD 181

Query: 272 VRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTK 331
              +T      +  +G     PF   G          I   H+  G++ IL G++H+  +
Sbjct: 182 PYGLTGKVQPVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVR 241

Query: 332 P----FAWARCALVWFGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPT 366
           P    +   R   +   E  LS S+ A+    F+    +W+ +   P E +GPT
Sbjct: 242 PPQRLYKGLRMGNI---ETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPT 271

The following BLAST results are available for this feature:

BLAST of CcUC05G107440 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009390805.1	3.5e-176	95.54	photosystem II CP43 chlorophyll apoprotein [Punica granatum] >ARV87268.1 photosy...	[more]
YP_009502721.1	3.5e-176	96.49	photosystem II CP43 chlorophyll apoprotein [Paris thibetica] >YP_009502987.1 pho...	[more]
YP_009674657.1	3.5e-176	96.49	photosystem II CP43 chlorophyll apoprotein [Bennettiodendron brevipes] >YP_00972...	[more]
YP_009048571.1	3.5e-176	96.49	photosystem II 44 kDa apoprotein (P6) [Paris verticillata] >YP_009145257.1 photo...	[more]
YP_010048629.1	4.5e-176	95.53	photosystem II CP43 chlorophyll apoprotein [Quercus acuta] >QPK76998.1 photosyst...	[more]

BLAST of CcUC05G107440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD93	7.7e-179	96.77	Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC P...	[more]
Q14FG1	2.3e-178	96.13	Photosystem II CP43 reaction center protein OS=Populus alba OX=43335 GN=psbC PE=...	[more]
A4GYQ5	2.3e-178	96.13	Photosystem II CP43 reaction center protein OS=Populus trichocarpa OX=3694 GN=ps...	[more]
Q2L901	2.9e-178	96.13	Photosystem II CP43 reaction center protein OS=Gossypium hirsutum OX=3635 GN=psb...	[more]
Q68S10	3.8e-178	95.81	Photosystem II CP43 reaction center protein OS=Panax ginseng OX=4054 GN=psbC PE=...	[more]

BLAST of CcUC05G107440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6C0MSK8	1.7e-176	96.49	Photosystem II CP43 reaction center protein OS=Paris delavayi OX=374957 GN=psbC ...	[more]
A0A1L6V0Z2	1.7e-176	96.49	Photosystem II CP43 reaction center protein OS=Paris dunniana OX=374961 GN=psbC ...	[more]
A0A1L6V268	1.7e-176	96.49	Photosystem II CP43 reaction center protein OS=Paris marmorata OX=221257 GN=psbC...	[more]
A0A1L6V167	1.7e-176	96.49	Photosystem II CP43 reaction center protein OS=Paris fargesii OX=83858 GN=psbC P...	[more]
A0A6C0MS60	1.7e-176	96.49	Photosystem II CP43 reaction center protein OS=Paris polyphylla var. emeiensis O...	[more]

BLAST of CcUC05G107440 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	1.3e-176	94.84	photosystem II reaction center protein C	[more]
ATCG00860.1	1.2e-20	81.03	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.2e-20	81.03	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG00680.1	3.9e-16	25.85	photosystem II reaction center protein B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 12..70 e-value: 6.9E-31 score: 106.4
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 91..368 e-value: 2.4E-90 score: 303.7
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 81..377
None	No IPR available	PANTHER	PTHR33180:SF16	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 81..377
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 88..377

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G107440.1	CcUC05G107440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding