CcUC05G107080 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G107080
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Pentatricopeptide repeat-containing protein
Location	CicolChr05: 34115890 .. 34116620 (+)
RNA-Seq Expression	CcUC05G107080
Synteny	CcUC05G107080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTCCTTACTAAAGACAAGCTTCATTCTGTTTTTATTATGAAATGGGAGACATGTTGGGCTTCGGATTTGTCTGTGTGTAGCGCTTCCACTAGTTTTGAAACTATCTCAAATTTCTCATGGGCTTGTCGGTGGAAAATGTTTCTACCAATCCCACCAAATGCACAGTCTATTCCAGTGGAAATCAAGCGCAAGACTTTCCAGACCCATCAAACTCGGCTTCTTCACTTCTTGACCGACTGTGCTGATTTGTTAAAGCTCAAACAGATACATGCTCAGGTAATTCGTAGCTTCTCGACCCACAAAAATCCTCCCTTTCTCTACAACCGAATTCTCCACATTTCTTCTTCAACTGATTTTGATTATGTCTGTCGTGTTTTTTTTTTTTTTTAATCAAGTCGATAACACAATTCGTTCATGTGGAACGATCTGATTGGAGCCTGTGCACGGAGAATGGACCGGAGAGAGCAGACGATTGAACTCTTTACAGAATGTTAGAAGAATCGGATGTTTATGTGGGCAACAGCTTGAATCATTTTTATGCTTCTTGTGGATGTTTTAGTTCAGCAATGACGGTGTTCGAGAAAATGCCTCACAGGAGTTTGGTTTGGTGGAATGAGATGATTGATGCATATTTTCGACGTGGGCTTTTTGAAAATGCTTTCAAGCTATTTGCTGAAATGCAGAACAGTTTTGAGCCCGACGGGTATACAGTTTATCGAAATTGA

mRNA sequence

ATGTCCTTCCTTACTAAAGACAAGCTTCATTCTGTTTTTATTATGAAATGGGAGACATGTTGGGCTTCGGATTTGTCTGTGTGTAGCGCTTCCACTAGTTTTGAAACTATCTCAAATTTCTCATGGGCTTGTCGGTGGAAAATGTTTCTACCAATCCCACCAAATGCACAGTCTATTCCAGTGGAAATCAAGCGCAAGACTTTCCAGACCCATCAAACTCGGCTTCTTCACTTCTTGACCGACTGTGCTGATTTGTTAAAGCTCAAACAGATACATGCTCAGGTGTTCGAGAAAATGCCTCACAGGAGTTTGGTTTGGTGGAATGAGATGATTGATGCATATTTTCGACGTGGGCTTTTTGAAAATGCTTTCAAGCTATTTGCTGAAATGCAGAACAGTTTTGAGCCCGACGGGTATACAGTTTATCGAAATTGA

Coding sequence (CDS)

ATGTCCTTCCTTACTAAAGACAAGCTTCATTCTGTTTTTATTATGAAATGGGAGACATGTTGGGCTTCGGATTTGTCTGTGTGTAGCGCTTCCACTAGTTTTGAAACTATCTCAAATTTCTCATGGGCTTGTCGGTGGAAAATGTTTCTACCAATCCCACCAAATGCACAGTCTATTCCAGTGGAAATCAAGCGCAAGACTTTCCAGACCCATCAAACTCGGCTTCTTCACTTCTTGACCGACTGTGCTGATTTGTTAAAGCTCAAACAGATACATGCTCAGGTGTTCGAGAAAATGCCTCACAGGAGTTTGGTTTGGTGGAATGAGATGATTGATGCATATTTTCGACGTGGGCTTTTTGAAAATGCTTTCAAGCTATTTGCTGAAATGCAGAACAGTTTTGAGCCCGACGGGTATACAGTTTATCGAAATTGA

Protein sequence

MSFLTKDKLHSVFIMKWETCWASDLSVCSASTSFETISNFSWACRWKMFLPIPPNAQSIPVEIKRKTFQTHQTRLLHFLTDCADLLKLKQIHAQVFEKMPHRSLVWWNEMIDAYFRRGLFENAFKLFAEMQNSFEPDGYTVYRN

Homology

[Close]

BLAST of CcUC05G107080 vs. NCBI nr
Match: XP_008446291.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 9.1e-21
Identity = 78/233 (33.48%), Postives = 84/233 (36.05%), Query Frame = 0


Query: 44  CRWKMFLPIPPNAQSIPVEIKRKTFQTHQTRLLHFLTDCADLLKLKQIHAQ--------- 103
           CRWKM L IPPN+QS P+EIKR+TF THQ+RLLH LTDC DL KLKQIHAQ         
Sbjct: 3   CRWKMLLAIPPNSQSFPIEIKRETFNTHQSRLLHLLTDCTDLSKLKQIHAQAIRNFSTHK 62

Query: 104 ------------------------------------------------------------ 142
                                                                       
Sbjct: 63  SSLFLYSRILHVSSLIDFDYACRVFNQIGNPNSFMWNTLIGACARSLDRKEQAIEIFYRM 122

[Close]

BLAST of CcUC05G107080 vs. NCBI nr
Match: XP_038892628.1 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-16
Identity = 73/229 (31.88%), Postives = 79/229 (34.50%), Query Frame = 0


Query: 48  MFLPIPPNAQSIPVEIKRKTFQTHQTRLLHFLTDCADLLKLKQIHAQ------------- 107
           M L IPPNAQSIP+EIKR+TF THQ+RLLH LT C DL KLKQIHAQ             
Sbjct: 1   MLLAIPPNAQSIPIEIKRETFHTHQSRLLHLLTHCTDLSKLKQIHAQVIRNFSTHKSSLF 60

Query: 108 ------------------------------------------------------------ 142
                                                                       
Sbjct: 61  LYSRILHVSSLTDFDYACRVFYQIGNPNSFMWNTLIGACARSLDRKEQAIELFYGMLEEG 120

[Close]

BLAST of CcUC05G107080 vs. NCBI nr
Match: KAG7032179.1 (Pentatricopeptide repeat-containing protein, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 8.8e-16
Identity = 71/229 (31.00%), Postives = 78/229 (34.06%), Query Frame = 0


Query: 48  MFLPIPPNAQSIPVEIKRKTFQTHQTRLLHFLTDCADLLKLKQIHAQ------------- 107
           M L IPPN QSIPVEIK +TF   Q+RLLH L+DC DL +LKQIHAQ             
Sbjct: 1   MLLSIPPNGQSIPVEIKHETFHARQSRLLHLLSDCTDLSRLKQIHAQALRTFSTHKSSLF 60

Query: 108 ------------------------------------------------------------ 142
                                                                       
Sbjct: 61  LFSRILHASSLTDFEYALRVFDQIDSPNSFVWNTLIGACARSLDRKEQAIELFYRMLEEG 120

[Close]

BLAST of CcUC05G107080 vs. NCBI nr
Match: KAG6601399.1 (Pentatricopeptide repeat-containing protein, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 8.8e-16
Identity = 71/229 (31.00%), Postives = 78/229 (34.06%), Query Frame = 0


Query: 48  MFLPIPPNAQSIPVEIKRKTFQTHQTRLLHFLTDCADLLKLKQIHAQ------------- 107
           M L IPPN QSIPVEIK +TF   Q+RLLH L+DC DL +LKQIHAQ             
Sbjct: 1   MLLSIPPNGQSIPVEIKHETFHARQSRLLHLLSDCTDLSRLKQIHAQALRTFSTHKSSLF 60

Query: 108 ------------------------------------------------------------ 142
                                                                       
Sbjct: 61  LFSRILHASSLTDFEYALRVFDQIDSPNSFVWNTLIGACARSLDRKEQAIELFYRMLEEG 120

[Close]

BLAST of CcUC05G107080 vs. NCBI nr
Match: XP_023537748.1 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-15
Identity = 71/229 (31.00%), Postives = 79/229 (34.50%), Query Frame = 0


Query: 48  MFLPIPPNAQSIPVEIKRKTFQTHQTRLLHFLTDCADLLKLKQIHAQ------------- 107
           M L IPPN QSIPVEIK +TF   Q+RLLH L+DC DL +LKQIHAQ             
Sbjct: 1   MILSIPPNGQSIPVEIKHETFHAPQSRLLHLLSDCTDLSRLKQIHAQALRTFSTHKSSLF 60

Query: 108 ------------------------------------------------------------ 142
                                                                       
Sbjct: 61  LFSRILHVSSLTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEG 120

[Close]

BLAST of CcUC05G107080 vs. ExPASy Swiss-Prot
Match: Q0WQW5 (Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H51 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-11
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 75  LLHFLTDCADLLKLKQIHAQVFEKMPHRSLVWWNEMIDAYFRRGLFENAFKLFAEMQNSF 134
           L+H    C  L     +  +VF++MP RSLV WN MIDA  R G +++A +LF EMQ SF
Sbjct: 192 LIHLYGSCGCL----DLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSF 251

Query: 135 EPDGYTV 142
           EPDGYT+
Sbjct: 252 EPDGYTM 254

[Close]

BLAST of CcUC05G107080 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 5.0e-06
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 72  QTRLLHFLTDCADLLKLKQIHAQVFEKMPHRSLVWWNEMIDAYFRRGLFENAFKLFAEMQ 131
           Q  LLH   +C D+        +VF+KMP + LV WN +I+ +   G  E A  L+ EM 
Sbjct: 159 QNSLLHLYANCGDVASA----YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMN 218

Query: 132 N-SFEPDGYTV 142
           +   +PDG+T+
Sbjct: 219 SKGIKPDGFTI 225

[Close]

BLAST of CcUC05G107080 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-05
Identity = 25/70 (35.71%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 72  QTRLLHFLTDCADLLKLKQIHAQVFEKMPHRSLVWWNEMIDAYFRRGLFENAFKLFAEMQ 131
           Q  L+ F + C D+   +    QVF++MP +S+V WN ++  + + GL + A ++F +M+
Sbjct: 145 QAALVTFYSKCGDMEGAR----QVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMR 204

Query: 132 NS-FEPDGYT 141
            S FEPD  T
Sbjct: 205 ESGFEPDSAT 210

[Close]

BLAST of CcUC05G107080 vs. ExPASy Swiss-Prot
Match: O23337 (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-05
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 95  VFEKMPHRSLVWWNEMIDAYFRRGLFENAFKLFAEMQNS 134
           VF++M HR +V WN MI+ Y R GL + AFKLF EM++S
Sbjct: 168 VFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDS 206

[Close]

BLAST of CcUC05G107080 vs. ExPASy Swiss-Prot
Match: Q9SS60 (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.3e-05
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 94  QVFEKMPHRSLVWWNEMIDAYFRRGLFENAFKLFAEMQNSF-EPDGYTV 142
           QVF++MP R LV WN +I  Y   G +E A +++ E++NS+  PD +TV
Sbjct: 162 QVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTV 210

[Close]

BLAST of CcUC05G107080 vs. ExPASy TrEMBL
Match: A0A1S3BE78 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103489069 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.4e-21
Identity = 78/233 (33.48%), Postives = 84/233 (36.05%), Query Frame = 0


Query: 44  CRWKMFLPIPPNAQSIPVEIKRKTFQTHQTRLLHFLTDCADLLKLKQIHAQ--------- 103
           CRWKM L IPPN+QS P+EIKR+TF THQ+RLLH LTDC DL KLKQIHAQ         
Sbjct: 3   CRWKMLLAIPPNSQSFPIEIKRETFNTHQSRLLHLLTDCTDLSKLKQIHAQAIRNFSTHK 62

Query: 104 ------------------------------------------------------------ 142
                                                                       
Sbjct: 63  SSLFLYSRILHVSSLIDFDYACRVFNQIGNPNSFMWNTLIGACARSLDRKEQAIEIFYRM 122

[Close]

BLAST of CcUC05G107080 vs. ExPASy TrEMBL
Match: A0A6J1GYL5 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111458669 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 70/229 (30.57%), Postives = 78/229 (34.06%), Query Frame = 0


Query: 48  MFLPIPPNAQSIPVEIKRKTFQTHQTRLLHFLTDCADLLKLKQIHAQ------------- 107
           M L IPPN QSIPVEIK +TF   Q+RLLH L+DC DL +LKQIHAQ             
Sbjct: 1   MLLSIPPNGQSIPVEIKHETFHARQSRLLHLLSDCTDLSRLKQIHAQALRTFSTHKSSLF 60

Query: 108 ------------------------------------------------------------ 142
                                                                       
Sbjct: 61  LFSRILHVSSLTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQAIELFYRMLEEG 120

[Close]

BLAST of CcUC05G107080 vs. ExPASy TrEMBL
Match: A0A6J1KA08 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111492988 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.6e-15
Identity = 69/229 (30.13%), Postives = 79/229 (34.50%), Query Frame = 0


Query: 48  MFLPIPPNAQSIPVEIKRKTFQTHQTRLLHFLTDCADLLKLKQIHAQ------------- 107
           M L IPPN QSIPVEIK +TF   Q+ LLH L++C DL +LKQIHAQ             
Sbjct: 1   MLLSIPPNGQSIPVEIKHETFHARQSGLLHLLSNCTDLSRLKQIHAQALRTFSTHKSSLF 60

Query: 108 ------------------------------------------------------------ 142
                                                                       
Sbjct: 61  LFSRILHVSSLTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKKQAIELFYRMLEEG 120

[Close]

BLAST of CcUC05G107080 vs. ExPASy TrEMBL
Match: A0A0A0KTV7 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604120 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 69/229 (30.13%), Postives = 77/229 (33.62%), Query Frame = 0


Query: 48  MFLPIPPNAQSIPVEIKRKTFQTHQTRLLHFLTDCADLLKLKQIHAQ------------- 107
           M L IP N+QS+P+EIK +  +THQ+R LH LTDC DL KLKQIHAQ             
Sbjct: 1   MLLAIPTNSQSLPIEIKGENSKTHQSRFLHLLTDCTDLSKLKQIHAQAIRNFSTHNSSLF 60

Query: 108 ------------------------------------------------------------ 142
                                                                       
Sbjct: 61  LYSRILHVSSLIDFDYACRVFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEG 120

[Close]

BLAST of CcUC05G107080 vs. ExPASy TrEMBL
Match: A0A5D3CYP1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00380 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-12
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 75  LLHFLTDCADLLKLKQIHAQVFEKMPHRSLVWWNEMIDAYFRRGLFENAFKLFAEMQNSF 134
           L+H    C  L     +  +VFEKMP RSLV WN MIDAY + GLFENA KLF EMQNSF
Sbjct: 77  LIHLYASCGCL----SMALKVFEKMPLRSLVSWNVMIDAYVQCGLFENALKLFFEMQNSF 136

Query: 135 EPDGYTV 142
           EPDGYT+
Sbjct: 137 EPDGYTM 139

[Close]

BLAST of CcUC05G107080 vs. TAIR 10
Match: AT1G59720.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 75  LLHFLTDCADLLKLKQIHAQVFEKMPHRSLVWWNEMIDAYFRRGLFENAFKLFAEMQNSF 134
           L+H    C  L     +  +VF++MP RSLV WN MIDA  R G +++A +LF EMQ SF
Sbjct: 192 LIHLYGSCGCL----DLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSF 251

Query: 135 EPDGYTV 142
           EPDGYT+
Sbjct: 252 EPDGYTM 254

[Close]

BLAST of CcUC05G107080 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-07
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 72  QTRLLHFLTDCADLLKLKQIHAQVFEKMPHRSLVWWNEMIDAYFRRGLFENAFKLFAEMQ 131
           Q  LLH   +C D+        +VF+KMP + LV WN +I+ +   G  E A  L+ EM 
Sbjct: 159 QNSLLHLYANCGDVASA----YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMN 218

Query: 132 N-SFEPDGYTV 142
           +   +PDG+T+
Sbjct: 219 SKGIKPDGFTI 225

[Close]

BLAST of CcUC05G107080 vs. TAIR 10
Match: AT4G21065.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-07
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 72  QTRLLHFLTDCADLLKLKQIHAQVFEKMPHRSLVWWNEMIDAYFRRGLFENAFKLFAEMQ 131
           Q  LLH   +C D+        +VF+KMP + LV WN +I+ +   G  E A  L+ EM 
Sbjct: 26  QNSLLHLYANCGDVASA----YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMN 85

Query: 132 N-SFEPDGYTV 142
           +   +PDG+T+
Sbjct: 86  SKGIKPDGFTI 92

[Close]

BLAST of CcUC05G107080 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-06
Identity = 25/70 (35.71%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 72  QTRLLHFLTDCADLLKLKQIHAQVFEKMPHRSLVWWNEMIDAYFRRGLFENAFKLFAEMQ 131
           Q  L+ F + C D+   +    QVF++MP +S+V WN ++  + + GL + A ++F +M+
Sbjct: 145 QAALVTFYSKCGDMEGAR----QVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMR 204

Query: 132 NS-FEPDGYT 141
            S FEPD  T
Sbjct: 205 ESGFEPDSAT 210

[Close]

BLAST of CcUC05G107080 vs. TAIR 10
Match: AT4G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-06
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 95  VFEKMPHRSLVWWNEMIDAYFRRGLFENAFKLFAEMQNS 134
           VF++M HR +V WN MI+ Y R GL + AFKLF EM++S
Sbjct: 168 VFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDS 206

The following BLAST results are available for this feature:

BLAST of CcUC05G107080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446291.1	9.1e-21	33.48	PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/...	[more]
XP_038892628.1	4.0e-16	31.88	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
KAG7032179.1	8.8e-16	31.00	Pentatricopeptide repeat-containing protein, chloroplastic/mitochondrial [Cucurb...	[more]
KAG6601399.1	8.8e-16	31.00	Pentatricopeptide repeat-containing protein, chloroplastic/mitochondrial, partia...	[more]
XP_023537748.1	1.5e-15	31.00	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]

BLAST of CcUC05G107080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WQW5	4.0e-11	50.75	Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
A8MQA3	5.0e-06	36.62	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
P93011	1.5e-05	35.71	Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX...	[more]
O23337	2.5e-05	56.41	Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX...	[more]
Q9SS60	3.3e-05	44.90	Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX...	[more]

BLAST of CcUC05G107080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BE78	4.4e-21	33.48	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
A0A6J1GYL5	1.2e-15	30.57	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
A0A6J1KA08	3.6e-15	30.13	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
A0A0A0KTV7	1.4e-14	30.13	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G6041...	[more]
A0A5D3CYP1	1.7e-12	62.69	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of CcUC05G107080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G59720.1	2.8e-12	50.75	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.1	3.6e-07	36.62	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.2	3.6e-07	36.62	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G33760.1	1.0e-06	35.71	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G14820.1	1.8e-06	56.41	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 104..140 e-value: 1.1E-8 score: 35.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 107..132 e-value: 9.6E-6 score: 23.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 103..133 score: 9.426776
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 51..142 e-value: 5.1E-10 score: 41.0
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 94..141
None	No IPR available	PANTHER	PTHR47925:SF96	BNAC04G18690D PROTEIN	coord: 94..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G107080.1	CcUC05G107080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding