CcUC05G106790 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G106790
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	transcription factor PRE6-like
Location	CicolChr05: 33878065 .. 33879150 (+)
RNA-Seq Expression	CcUC05G106790
Synteny	CcUC05G106790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGCCAGAAGCTCGCGTACTAGACGCTCGGGTGTTCCTTCAAGGAACATTTCTGACGACCAAATTGCTGATTTGATCTCAAAATTACAGCAGCTCATCCCTGAGATTCGTAATGGACGTTCCTCCTCCAGGGTATTTTATTTCTTCTTTTTCTCTTTCTTTTTCCATTTTTATTATTCCAACTTATATATATATATATATATCTTACTTCATTAACATTAAATGAATTACACATTAAATTTTCAAAAAGTCTATCAGCTTAAGCTGATGTTTGTGTGGACATTAGTTCGGATAGTCAAGTATTGTGTGCTAATAATTTATATAGCCGCTCCCAAGAGGAAGAGAGCGGTTAAGAAGGATGGGTGCGGACTTCGAATCTAAATTCACCCTACATTATTCTCAATTATCTCTCCTTCAAATAGGGGGAAAAAACGCGTTTAACGCCCTCTGTGTTTTAATCACTTTTTAAAATTCAATTCAAAACAATAATGATCTATTCAAACTAATTTCAATAACTAATTTATGAACTTTTAACTCAAATTTCAAATAATATATCAAGCTTTCTTTTCTTCCAAATTTCAACTTTAAAATAAACTAAAAAAGTAGTGTTTTTATAATTTTCATACAAAAAAAAAAAAAAAAAAATGTTATCAAATTAAATGGAGCATTAATTAATTGGGATTAGATGATGAATATAACAATCGTACCCAAAATATTAGTAGATATAACAAAATTTAGATCTATTAATAATAGACTATATCACAGGTAGGAATCTATAAGCATTGTGATAGCGGGTCTATCACTGATAGACTTTGTTATATTTGCGATTCTTTGACAATGTTATTATTTACGTAATTATTGGCCCTAAAAGTATTATAAATGGCAATTACTCTAATCAAAATTTGTGAATGTGCATGGGGGGTTGTTTAGGTATCAGCTTCTAAGGTTCTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGATGATTTAAGCGATCGATTATCGGAGCTATTGGCATCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA

mRNA sequence

ATGTCCGCCAGAAGCTCGCGTACTAGACGCTCGGGTGTTCCTTCAAGGAACATTTCTGACGACCAAATTGCTGATTTGATCTCAAAATTACAGCAGCTCATCCCTGAGATTCGTAATGGACGTTCCTCCTCCAGGGTATCAGCTTCTAAGGTTCTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGATGATTTAAGCGATCGATTATCGGAGCTATTGGCATCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA

Coding sequence (CDS)

ATGTCCGCCAGAAGCTCGCGTACTAGACGCTCGGGTGTTCCTTCAAGGAACATTTCTGACGACCAAATTGCTGATTTGATCTCAAAATTACAGCAGCTCATCCCTGAGATTCGTAATGGACGTTCCTCCTCCAGGGTATCAGCTTCTAAGGTTCTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGATGATTTAAGCGATCGATTATCGGAGCTATTGGCATCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA

Protein sequence

MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

Homology

[Close]

BLAST of CcUC05G106790 vs. NCBI nr
Match: XP_038893351.1 (transcription factor PRE6-like [Benincasa hispida])

HSP 1 Score: 170.6 bits (431), Expect = 6.4e-39
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSR+RRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CcUC05G106790 vs. NCBI nr
Match: XP_004135185.1 (transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa_009290 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSR+RRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CcUC05G106790 vs. NCBI nr
Match: XP_008446331.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 4.6e-37
Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSR+RRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CcUC05G106790 vs. NCBI nr
Match: XP_022151230.1 (transcription factor PRE6-like [Momordica charantia])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSR+RRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CcUC05G106790 vs. NCBI nr
Match: XP_022968308.1 (transcription factor PRE6-like [Cucurbita maxima])

HSP 1 Score: 158.3 bits (399), Expect = 3.3e-35
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSR+RRS VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of CcUC05G106790 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-27
Identity = 72/93 (77.42%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 2  SARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRS 61
          S RSSR+R+SG  S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+
Sbjct: 3  SRRSSRSRQSG--SSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYIRN 62

Query: 62 LQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of CcUC05G106790 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.3e-25
Identity = 62/90 (68.89%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 5  SSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQR 64
          SSR  R    S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 65 EVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          E DDLSDRL++LL S DP S QAA+IRSL+
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of CcUC05G106790 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-24
Identity = 66/95 (69.47%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+R SR+R+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEARL-RSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of CcUC05G106790 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-24
Identity = 66/95 (69.47%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+R SR+R+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEARL-RSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of CcUC05G106790 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-24
Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS R SR+R+S   SR IS+DQI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSSGTSR-ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          +L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Sbjct: 61 NLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]

BLAST of CcUC05G106790 vs. ExPASy TrEMBL
Match: A0A0A0KQJ7 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G604940 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.9e-38
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSR+RRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CcUC05G106790 vs. ExPASy TrEMBL
Match: A0A1S3BFH5 (transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103489101 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.2e-37
Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSR+RRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CcUC05G106790 vs. ExPASy TrEMBL
Match: A0A6J1DAM4 (transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-37
Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSR+RRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CcUC05G106790 vs. ExPASy TrEMBL
Match: A0A6J1HXN1 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.6e-35
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSR+RRS VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of CcUC05G106790 vs. ExPASy TrEMBL
Match: A0A6J1G268 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSR+RRS VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of CcUC05G106790 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-28
Identity = 72/93 (77.42%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 2  SARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRS 61
          S RSSR+R+SG  S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+
Sbjct: 3  SRRSSRSRQSG--SSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYIRN 62

Query: 62 LQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of CcUC05G106790 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 114.0 bits (284), Expect = 6.6e-26
Identity = 62/90 (68.89%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 5  SSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQR 64
          SSR  R    S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 65 EVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          E DDLSDRL++LL S DP S QAA+IRSL+
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of CcUC05G106790 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 111.3 bits (277), Expect = 4.3e-25
Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS R SR+R+S   SR IS+DQI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSSGTSR-ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          +L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Sbjct: 61 NLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]

BLAST of CcUC05G106790 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 107.5 bits (267), Expect = 6.2e-24
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 5  SSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQR 64
          S+R  R    +  ISDDQ+ DL+SKL+Q +PEI   R S +VSASKVLQETCNYIR L R
Sbjct: 2  SNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHR 61

Query: 65 EVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          EVD+LSDRLS+LL S D +S +AA+IRSLLM
Sbjct: 62 EVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CcUC05G106790 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 104.8 bits (260), Expect = 4.0e-23
Identity = 59/95 (62.11%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1  MSARSSRTRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+R SR+R++G  +  I+D+QI DL+ +L +L+PE+ N R S +VSAS+VLQETC+YIR
Sbjct: 1  MSSRKSRSRQTG--ASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          +L +EVDDLS+RLS+LL STD  SAQAA+IRSLLM
Sbjct: 61 NLSKEVDDLSERLSQLLESTD--SAQAALIRSLLM 91

The following BLAST results are available for this feature:

BLAST of CcUC05G106790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893351.1	6.4e-39	97.89	transcription factor PRE6-like [Benincasa hispida]	[more]
XP_004135185.1	2.1e-37	95.79	transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa...	[more]
XP_008446331.1	4.6e-37	94.74	PREDICTED: transcription factor PRE6-like [Cucumis melo]	[more]
XP_022151230.1	6.0e-37	94.74	transcription factor PRE6-like [Momordica charantia]	[more]
XP_022968308.1	3.3e-35	91.58	transcription factor PRE6-like [Cucurbita maxima]	[more]

BLAST of CcUC05G106790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	2.0e-27	77.42	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9LXG5	9.3e-25	68.89	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
B8APB5	1.2e-24	69.47	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	1.2e-24	69.47	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
Q9CA64	6.0e-24	68.09	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]

BLAST of CcUC05G106790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQJ7	9.9e-38	95.79	Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G604940 PE=4 SV=1	[more]
A0A1S3BFH5	2.2e-37	94.74	transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103489101 PE=4 SV=1	[more]
A0A6J1DAM4	2.9e-37	94.74	transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE...	[more]
A0A6J1HXN1	1.6e-35	91.58	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 ...	[more]
A0A6J1G268	2.1e-35	91.58	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=...	[more]

BLAST of CcUC05G106790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	1.4e-28	77.42	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G15160.1	6.6e-26	68.89	BANQUO 2	[more]
AT1G74500.1	4.3e-25	68.09	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT3G28857.1	6.2e-24	63.74	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT3G47710.1	4.0e-23	62.11	BANQUO 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..79
None	No IPR available	PANTHER	PTHR46446:SF11	TRANSCRIPTION FACTOR PRE6	coord: 1..95
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 18..79 e-value: 5.8551E-19 score: 71.5655
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 21..63 e-value: 3.4E-7 score: 30.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 7..62 score: 10.048319
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 21..89 e-value: 2.3E-9 score: 39.1
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 21..82
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G106790.1	CcUC05G106790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity