CcUC05G106560 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G106560
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	50S ribosomal protein L18
Location	CicolChr05: 33719716 .. 33721523 (+)
RNA-Seq Expression	CcUC05G106560
Synteny	CcUC05G106560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTCTTTATTTCTAAATACTTTAAATTTCAAAAAAGTTTATGGTGGGATGCCTTTTCTAAATGTTCCTGGTCTTCTATCGAAGACTTCTACGCCCTTCGGGTTGCAGTTAGAGCCATTTAGCTTTCCCAGCTTGAAAACTAAAAGTAAGTGAAACAGTATGTGCATTAGCTCCTAATCCGTATGATAATCAATAAATCTTTTCCTGGACGAAGGTAGACACATACTAGCATATATCTACTATACCAAATAATGGAAGCAGTTGATTTTGTTTTATAATGAGTTCCTACATTCCGTGTAGATTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGAAACACTAAAACAGAAAGTGCAAAAATTAGAAATAGGAGATTGCAGAAAAAGGTGCGTTATCATTCGCTTTACTTCTCAGATTTTTCTTGAAGGGACTGATTTTTTCGAGAGCGAGCAAGGTTAGAAATTTATTAACAAAGCAGTTTGAAGTTAGTGTTAAGAAAGAATTGACAAGATAAGGGGGATGTAGAGACCAAGAACCAAAGTCTTATTGCTTCAATTGCAATGCACAGTATGACAATCTTAAACAGGTAGAACTTACCTAAAAAAACTTAATTTCAGTCACTTAACTTATTTAACTTTTAAATTTGTGTCAAACAGATTCTCTTTAGAGAAAAAAAAAAAAAAAAAAGAGGTGTATGCATCTCTAAATTTCAGTTGTGTGTAATAATTCTTTGAACATCCAATTTTGTGTTTAAATAGGTCTTCAATCTATTCAACATTTTTATAAATAATGAACTTATTTAACGTAAAATTAGAAGTTTAATATTCGGTTAGACATGCCATTCAATTTTATGCCTAATACATTTGATAATTTTTTAAAAAGACTATTGAATATGCAAGATCAATGAAGACATAAATTTAAAAGTTTAGAGACTTATTTGGCATTTTTTATAAAATAAAAAATTTAAAAACTTATTAAATAATTAGTGTAAAACCCACTGAAGCTTATAGCAATTTTAGAAACAAACGGAAAGTAGTGTCCTCCTATATTGGAACCTGAACCCAACCGGCCTGTTGGGCAGTGGCAGCGACCACAAATTTTTCTGAAGAATTCGCCATGCGTGTGTGGAGAAATCATTACCAACGTCCTGAAATTTAAATGTTAGGCAATCTAAAATGTTTAAAGTATTCAATTTGAGTCGTGAATTTATGAACATTATAAAAAACTTTAATAAACGTATGGAACCTATGCTAAGGGATTTCTGCACAATTTACATATGTATTACTAACATTGAAGCTCTTTTTGTTTTTAAATTTCGTTCATTGGTAGTCATCATAGTAACAACAAAGTTCTCATTACATTTGATGGTTTTCAACGGCAAGCAGTATAATGGCACTCCTACAAGGCCAAGGCTTTCGGTATTCTGTTCTGATAAACAGTTGTATGCAATGTTGGTTGACGATCAGAACAAGAAGTGCTTGTTTTATGGAAGCACCTTACAAAAACTTATGCGTCCAAGTCCCTCATGTACCACCATCGTAAGTTTTCATTCTTAAGGTCTGCCTTGAAATTAAGACCACAAAACTCCCATTAAGAAACTATTATTAAATATGAAAGACCTAAGTTTCCTCTTGTTTTGGTGATTACAGGAAGCTGCTCAACATGTTGGTGAAGAACTTGTGAAGGCATGCGAGGACTTGAACATACACGAAATATCATCTTATGATCGAAATGGGTTTGCTCGTGGAGAGAAAATGCAAGCCTTCGAAATTGCATTATCGCGCTATGGGTTCTTACAATGA

mRNA sequence

ATGCCCTCTTTATTTCTAAATACTTTAAATTTCAAAAAAGTTTATGGTGGGATGCCTTTTCTAAATGTTCCTGGTCTTCTATCGAAGACTTCTACGCCCTTCGGGTTGCAGTTAGAGCCATTTAGCTTTCCCAGCTTGAAAACTAAAAATTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGAAACACTAAAACAGAAAGTGCAAAAATTAGAAATAGGAGATTGCAGAAAAAGTATAATGGCACTCCTACAAGGCCAAGGCTTTCGGTATTCTGTTCTGATAAACAGTTGTATGCAATGTTGGTTGACGATCAGAACAAGAAGTGCTTGTTTTATGGAAGCACCTTACAAAAACTTATGCGTCCAAGTCCCTCATGTACCACCATCGAAGCTGCTCAACATGTTGGTGAAGAACTTGTGAAGGCATGCGAGGACTTGAACATACACGAAATATCATCTTATGATCGAAATGGGTTTGCTCGTGGAGAGAAAATGCAAGCCTTCGAAATTGCATTATCGCGCTATGGGTTCTTACAATGA

Coding sequence (CDS)

ATGCCCTCTTTATTTCTAAATACTTTAAATTTCAAAAAAGTTTATGGTGGGATGCCTTTTCTAAATGTTCCTGGTCTTCTATCGAAGACTTCTACGCCCTTCGGGTTGCAGTTAGAGCCATTTAGCTTTCCCAGCTTGAAAACTAAAAATTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGAAACACTAAAACAGAAAGTGCAAAAATTAGAAATAGGAGATTGCAGAAAAAGTATAATGGCACTCCTACAAGGCCAAGGCTTTCGGTATTCTGTTCTGATAAACAGTTGTATGCAATGTTGGTTGACGATCAGAACAAGAAGTGCTTGTTTTATGGAAGCACCTTACAAAAACTTATGCGTCCAAGTCCCTCATGTACCACCATCGAAGCTGCTCAACATGTTGGTGAAGAACTTGTGAAGGCATGCGAGGACTTGAACATACACGAAATATCATCTTATGATCGAAATGGGTTTGCTCGTGGAGAGAAAATGCAAGCCTTCGAAATTGCATTATCGCGCTATGGGTTCTTACAATGA

Protein sequence

MPSLFLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQARGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKLMRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIALSRYGFLQ

Homology

[Close]

BLAST of CcUC05G106560 vs. NCBI nr
Match: XP_038891854.1 (50S ribosomal protein L18 isoform X1 [Benincasa hispida] >XP_038891855.1 50S ribosomal protein L18 isoform X1 [Benincasa hispida])

HSP 1 Score: 338.2 bits (866), Expect = 4.4e-89
Identity = 166/180 (92.22%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MPSLFLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 60
           MPSL LNTLN KKVYGGM FLN PGLLSKTSTPFGLQ +PF+FPSLKT+NCDVKPL IQA
Sbjct: 47  MPSLLLNTLNLKKVYGGMAFLNGPGLLSKTSTPFGLQSKPFNFPSLKTRNCDVKPLTIQA 106

Query: 61  RGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKL 120
           RGN+KTESAKI NRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQK 
Sbjct: 107 RGNSKTESAKITNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 166

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIALSRYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIA+SRYG LQ
Sbjct: 167 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISRYGLLQ 226

[Close]

BLAST of CcUC05G106560 vs. NCBI nr
Match: XP_038891856.1 (50S ribosomal protein L18 isoform X2 [Benincasa hispida])

HSP 1 Score: 338.2 bits (866), Expect = 4.4e-89
Identity = 166/180 (92.22%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MPSLFLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 60
           MPSL LNTLN KKVYGGM FLN PGLLSKTSTPFGLQ +PF+FPSLKT+NCDVKPL IQA
Sbjct: 1   MPSLLLNTLNLKKVYGGMAFLNGPGLLSKTSTPFGLQSKPFNFPSLKTRNCDVKPLTIQA 60

Query: 61  RGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKL 120
           RGN+KTESAKI NRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQK 
Sbjct: 61  RGNSKTESAKITNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIALSRYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIA+SRYG LQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISRYGLLQ 180

[Close]

BLAST of CcUC05G106560 vs. NCBI nr
Match: XP_022987454.1 (uncharacterized protein LOC111484997 [Cucurbita maxima])

HSP 1 Score: 327.4 bits (838), Expect = 7.7e-86
Identity = 160/180 (88.89%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MPSLFLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 60
           MPSL LNT+NF+KV GGM FLNVPGLLSKTSTPF  Q +PF+FPSLK ++CDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 61  RGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKL 120
           RGN+KTESAK+RNRRLQKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQK 
Sbjct: 61  RGNSKTESAKVRNRRLQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIALSRYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIA+SRYGFLQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CcUC05G106560 vs. NCBI nr
Match: XP_023547360.1 (uncharacterized protein LOC111806273 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.2 bits (827), Expect = 1.5e-84
Identity = 158/180 (87.78%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MPSLFLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 60
           MPSL LNT+NF+KV GGM FLNVPGLLSKTSTPF  Q +PF+FPSLK ++CDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 61  RGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKL 120
           RGN+KTESAK+RNRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQK 
Sbjct: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIALSRYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIA+S YGFLQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180

[Close]

BLAST of CcUC05G106560 vs. NCBI nr
Match: XP_022957246.1 (uncharacterized protein LOC111458689 [Cucurbita moschata] >KAG6601437.1 50S ribosomal protein L18, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 321.2 bits (822), Expect = 5.5e-84
Identity = 157/180 (87.22%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 1   MPSLFLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 60
           MPSL LNT+NF+KV GGM FLNVPGLLSKT TPF  Q +PF+FPSLK ++CDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTPTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 61  RGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKL 120
           RGN+KTESAK+RNRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQK 
Sbjct: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIALSRYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIA+S YGFLQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180

[Close]

BLAST of CcUC05G106560 vs. ExPASy Swiss-Prot
Match: P82195 (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-14
Identity = 44/126 (34.92%), Postives = 73/126 (57.94%), Query Frame = 0


Query: 57  MIQARGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 116
           +IQA+ +T+ E    R+ R++KK  GTP RPRL VF S+K LY  ++DD     L   ST
Sbjct: 41  LIQAKAHTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAAST 100

Query: 117 LQKLMRPS---PSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAL 176
           +QK +  +    +  T+E AQ +GE + K+C +  I ++ ++DR G+    +++A   A 
Sbjct: 101 MQKAISENIDYSAGPTVEVAQKIGEMIAKSCLEKGITKV-AFDRGGYPYHGRVKALADAA 160

Query: 177 SRYGFL 180
             +G +
Sbjct: 161 REHGLV 165

[Close]

BLAST of CcUC05G106560 vs. ExPASy Swiss-Prot
Match: Q9SX68 (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.8e-14
Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 38  LEPFSFPSLKTKNCDVKPLMIQARGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQ 97
           L+P+S  SL++++     ++++A+  T +E    R+ R++KK NGT  RPRL VF S+K 
Sbjct: 31  LKPWSSSSLQSRS-----MVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKH 90

Query: 98  LYAMLVDDQNKKCLFYGSTLQKLMRPS---PSCTTIEAAQHVGEELVKACEDLNIHEISS 157
           LY  ++DD     L   ST QK +       S  TIE A+ VGE + K+C +  I ++ +
Sbjct: 91  LYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKV-A 150

Query: 158 YDRNGFARGEKMQAFEIALSRYG 178
           +DR G+    +++A   A   +G
Sbjct: 151 FDRGGYPYHGRIEALAAAAREHG 167

[Close]

BLAST of CcUC05G106560 vs. ExPASy Swiss-Prot
Match: A9FGF8 (50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=rplR PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 72  RNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKLMRPS-PSCTTI 131
           R  R++KK  GTP RPRLSVF S K +YA ++DD + K L + STL K ++ S      +
Sbjct: 11  RKLRIRKKVEGTPERPRLSVFRSSKHIYAQVIDDVSGKTLAHASTLSKDLKGSLDEDNKV 70

Query: 132 EAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIALSRYG 178
           EAA+ VG  + + C++  I ++  +DRNG+    ++ A   A    G
Sbjct: 71  EAAKKVGALIARICKERQIDKV-VFDRNGYLYHGRVSALAQAAREAG 116

[Close]

BLAST of CcUC05G106560 vs. ExPASy Swiss-Prot
Match: P04453 (50S ribosomal protein L18 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) OX=340047 GN=rplR PE=3 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-11
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 64  TKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKLMRP 123
           TKTE+ K R+ R++ K  GT  RPRL+VF S+   YA ++DD     L   STL+  ++ 
Sbjct: 4   TKTEARKRRHFRVRHKVVGTAERPRLNVFKSNTNFYAQIIDDTKGVTLVSASTLKMDLK- 63

Query: 124 SPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAF 170
             S + I+AA+ V EEL K     NI+++  +DRNG+    K++AF
Sbjct: 64  --SKSNIQAAEKVAEELTKKALAANINQV-VFDRNGYLYHGKIKAF 105

[Close]

BLAST of CcUC05G106560 vs. ExPASy Swiss-Prot
Match: Q8SAY0 (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 0


Query: 56  LMIQARGNTKTESAK--IRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFY 115
           L++ A+    T  A    R+ RL+KK +GT  RPRLSVF S+K LYA ++DD     L  
Sbjct: 42  LVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVS 101

Query: 116 GSTLQKLMRPS---PSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFE 175
            ST+ K +       +  T+E AQ +GE + K+C +  I ++  +DR GF    +++A  
Sbjct: 102 ASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKV-VFDRGGFLYHGRIKALA 161

Query: 176 IALSRYG 178
            A    G
Sbjct: 162 DAARENG 167

[Close]

BLAST of CcUC05G106560 vs. ExPASy TrEMBL
Match: A0A6J1JIY0 (uncharacterized protein LOC111484997 OS=Cucurbita maxima OX=3661 GN=LOC111484997 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.7e-86
Identity = 160/180 (88.89%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MPSLFLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 60
           MPSL LNT+NF+KV GGM FLNVPGLLSKTSTPF  Q +PF+FPSLK ++CDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 61  RGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKL 120
           RGN+KTESAK+RNRRLQKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQK 
Sbjct: 61  RGNSKTESAKVRNRRLQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIALSRYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIA+SRYGFLQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CcUC05G106560 vs. ExPASy TrEMBL
Match: A0A6J1GYP6 (uncharacterized protein LOC111458689 OS=Cucurbita moschata OX=3662 GN=LOC111458689 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.7e-84
Identity = 157/180 (87.22%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 1   MPSLFLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 60
           MPSL LNT+NF+KV GGM FLNVPGLLSKT TPF  Q +PF+FPSLK ++CDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTPTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 61  RGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKL 120
           RGN+KTESAK+RNRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQK 
Sbjct: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIALSRYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIA+S YGFLQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180

[Close]

BLAST of CcUC05G106560 vs. ExPASy TrEMBL
Match: A0A6J1DC55 (uncharacterized protein LOC111019142 OS=Momordica charantia OX=3673 GN=LOC111019142 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 6.0e-84
Identity = 153/180 (85.00%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MPSLFLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 60
           MP   LNTL+F+KVYGGMP +N+PGLLSK+STPFG Q +PF+FPSLK+KNCD+KPL+IQA
Sbjct: 1   MPLSLLNTLDFQKVYGGMPLVNLPGLLSKSSTPFGFQSKPFNFPSLKSKNCDLKPLIIQA 60

Query: 61  RGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKL 120
           RG++K ESAKIRNRR+QKKYNGTP RPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQK 
Sbjct: 61  RGHSKPESAKIRNRRMQKKYNGTPKRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIALSRYGFLQ 180
           MRP+PSCTTIEAAQ+VGEELVK CEDLNIHEISSYDRNGFARGEKMQAFEIA+S YGFLQ
Sbjct: 121 MRPNPSCTTIEAAQYVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAISHYGFLQ 180

[Close]

BLAST of CcUC05G106560 vs. ExPASy TrEMBL
Match: A0A1S3BEE0 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103489126 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.3e-82
Identity = 156/180 (86.67%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 1   MPSLFLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 60
           M SL LNT NFKKV+GG+ F NV GLL KTS PFGLQ + F F SLKTK+CDVKPLMIQA
Sbjct: 1   MSSLLLNTSNFKKVHGGVAFQNVSGLLLKTSMPFGLQSKSFDFRSLKTKHCDVKPLMIQA 60

Query: 61  RGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKL 120
           RGN+KTESAK+RNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQK 
Sbjct: 61  RGNSKTESAKVRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIALSRYGFLQ 180
           MRP+ SCTTIEAAQHVGEELVK C DLNIHEISSYDRNGFARGEKMQAFEIA+SRYGFLQ
Sbjct: 121 MRPTLSCTTIEAAQHVGEELVKVCGDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CcUC05G106560 vs. ExPASy TrEMBL
Match: A0A5D3D244 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00380 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.3e-82
Identity = 156/180 (86.67%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 1   MPSLFLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 60
           M SL LNT NFKKV+GG+ F NV GLL KTS PFGLQ + F F SLKTK+CDVKPLMIQA
Sbjct: 1   MSSLLLNTSNFKKVHGGVAFQNVSGLLLKTSMPFGLQSKSFDFRSLKTKHCDVKPLMIQA 60

Query: 61  RGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKL 120
           RGN+KTESAK+RNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQK 
Sbjct: 61  RGNSKTESAKVRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIALSRYGFLQ 180
           MRP+ SCTTIEAAQHVGEELVK C DLNIHEISSYDRNGFARGEKMQAFEIA+SRYGFLQ
Sbjct: 121 MRPTLSCTTIEAAQHVGEELVKVCGDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CcUC05G106560 vs. TAIR 10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.6e-49
Identity = 99/152 (65.13%), Postives = 118/152 (77.63%), Query Frame = 0


Query: 29  KTSTPFGLQLEPF-SFPSLKTKNCDVKPLMIQARGNTKTESAKIRNRRLQKKYNGTPTRP 88
           + S   G +L+P+  FP   T    VKP +I+ARGNT+ ES K RNRR +KK+ GT T+P
Sbjct: 13  RVSDILGTRLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRRSRKKFTGTQTKP 72

Query: 89  RLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKLMRPSPSCTTIEAAQHVGEELVKACEDL 148
           RLSVFCSDKQLYAMLVDD NKKCLFY STLQK +R  P CT IEAA+ VGEEL+KA  DL
Sbjct: 73  RLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCTVIEAAKRVGEELIKASIDL 132

Query: 149 NIHEISSYDRNGFARGEKMQAFEIALSRYGFL 180
            I+EISSYDRNG  RGE+MQAFEIA++++GFL
Sbjct: 133 KINEISSYDRNGNKRGERMQAFEIAIAQHGFL 164

[Close]

BLAST of CcUC05G106560 vs. TAIR 10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-15
Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 38  LEPFSFPSLKTKNCDVKPLMIQARGNTKTESAKIRNRRLQKKYNGTPTRPRLSVFCSDKQ 97
           L+P+S  SL++++     ++++A+  T +E    R+ R++KK NGT  RPRL VF S+K 
Sbjct: 31  LKPWSSSSLQSRS-----MVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKH 90

Query: 98  LYAMLVDDQNKKCLFYGSTLQKLMRPS---PSCTTIEAAQHVGEELVKACEDLNIHEISS 157
           LY  ++DD     L   ST QK +       S  TIE A+ VGE + K+C +  I ++ +
Sbjct: 91  LYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKV-A 150

Query: 158 YDRNGFARGEKMQAFEIALSRYG 178
           +DR G+    +++A   A   +G
Sbjct: 151 FDRGGYPYHGRIEALAAAAREHG 167

The following BLAST results are available for this feature:

BLAST of CcUC05G106560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891854.1	4.4e-89	92.22	50S ribosomal protein L18 isoform X1 [Benincasa hispida] >XP_038891855.1 50S rib...	[more]
XP_038891856.1	4.4e-89	92.22	50S ribosomal protein L18 isoform X2 [Benincasa hispida]	[more]
XP_022987454.1	7.7e-86	88.89	uncharacterized protein LOC111484997 [Cucurbita maxima]	[more]
XP_023547360.1	1.5e-84	87.78	uncharacterized protein LOC111806273 [Cucurbita pepo subsp. pepo]	[more]
XP_022957246.1	5.5e-84	87.22	uncharacterized protein LOC111458689 [Cucurbita moschata] >KAG6601437.1 50S ribo...	[more]

BLAST of CcUC05G106560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82195	2.8e-14	34.92	50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P...	[more]
Q9SX68	4.8e-14	34.27	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
A9FGF8	1.0e-11	38.32	50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=...	[more]
P04453	5.0e-11	40.57	50S ribosomal protein L18 OS=Mycoplasma capricolum subsp. capricolum (strain Cal...	[more]
Q8SAY0	1.1e-10	35.43	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of CcUC05G106560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JIY0	3.7e-86	88.89	uncharacterized protein LOC111484997 OS=Cucurbita maxima OX=3661 GN=LOC111484997...	[more]
A0A6J1GYP6	2.7e-84	87.22	uncharacterized protein LOC111458689 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]
A0A6J1DC55	6.0e-84	85.00	uncharacterized protein LOC111019142 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1S3BEE0	4.3e-82	86.67	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103489126 PE=4 SV=1	[more]
A0A5D3D244	4.3e-82	86.67	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of CcUC05G106560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14205.1	1.6e-49	65.13	Ribosomal L18p/L5e family protein	[more]
AT1G48350.1	3.4e-15	34.27	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 64..178 e-value: 2.9E-21 score: 78.1
None	No IPR available	PANTHER	PTHR12899:SF8	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 28..179
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 77..178 e-value: 1.15612E-22 score: 85.2843
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 65..177
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 64..169 e-value: 1.3E-16 score: 61.0
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 28..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G106560.1	CcUC05G106560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome