CcUC05G105880 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G105880
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr05: 33277203 .. 33277536 (+)
RNA-Seq ExpressionCcUC05G105880
SyntenyCcUC05G105880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCGGGGAGCCGGAGAACGGAGGGTCGAAGGCGGCAAAGATCGTGGGGGCGGTGGTGGGGTTCGCCACGTTCATTGGGATTGTGGCGAGCCTGTTGTCGGCGGACTCTGGAACCATCGGTGATCGGAAAATGATGAAAGCTCCGGGAAAACAGGGGGAGCAAATATACAGAGATGAGTTTGAGAAGGATCCCTCTAAGTACTTCAGAGACCTGCGCAAGAACTGATCCTACTACACATCTCAAGAAAGCTCCTAATAATAATTAACTAGTTGTAGTATTTTCATGGTTTATTGTTTTATGAATGTTGTGATGATGAAGATACAGTGAGTGA

mRNA sequence

ATGTGCGGGGAGCCGGAGAACGGAGGGTCGAAGGCGGCAAAGATCGTGGGGGCGGTGGTGGGGTTCGCCACGTTCATTGGGATTGTGGCGAGCCTGTTGTCGGCGGACTCTGGAACCATCGGTGATCGGAAAATGATGAAAGCTCCGGGAAAACAGGGGGAGCAAATATACAGAGATGAGTTTGAGAAGGATCCCTCTAAATACAGTGAGTGA

Coding sequence (CDS)

ATGTGCGGGGAGCCGGAGAACGGAGGGTCGAAGGCGGCAAAGATCGTGGGGGCGGTGGTGGGGTTCGCCACGTTCATTGGGATTGTGGCGAGCCTGTTGTCGGCGGACTCTGGAACCATCGGTGATCGGAAAATGATGAAAGCTCCGGGAAAACAGGGGGAGCAAATATACAGAGATGAGTTTGAGAAGGATCCCTCTAAATACAGTGAGTGA

Protein sequence

MCGEPENGGSKAAKIVGAVVGFATFIGIVASLLSADSGTIGDRKMMKAPGKQGEQIYRDEFEKDPSKYSE
Homology
BLAST of CcUC05G105880 vs. NCBI nr
Match: KAA0034481.1 (hypothetical protein E6C27_scaffold65G004930 [Cucumis melo var. makuwa] >TYK09035.1 hypothetical protein E5676_scaffold475G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 6.8e-22
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 1  MCGEPENGGSKAAKIVGAVVGFATFIGIVASLL-SADSGTIGDRKMMKAPGKQGEQIYRD 60
          M GEP+NGGSKAAKIVGAVVGFATFIG VAS+L SADS T GDRKMMKAPGK GE++YRD
Sbjct: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD 60

Query: 61 EFEKDPSKY 69
          EFEKDPSKY
Sbjct: 61 EFEKDPSKY 69

BLAST of CcUC05G105880 vs. NCBI nr
Match: KAG6574034.1 (hypothetical protein SDJN03_27921, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 5.6e-16
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 1  MCGEPENGGSKAAKIVGAVVGFATFIGIVASLLSADSGTIGDRKMMKAPGKQGEQIYRDE 60
          M GEPE+GGSKAAKIVGAVVGFATFIG VAS+LSA +  +GD KMMKAPG++G+ I R +
Sbjct: 1  MSGEPESGGSKAAKIVGAVVGFATFIGCVASVLSAGAEAMGDPKMMKAPGRRGQMIERGK 60

Query: 61 FEKDPSKY 69
          FE++PS Y
Sbjct: 61 FEENPSGY 68

BLAST of CcUC05G105880 vs. NCBI nr
Match: PRQ56758.1 (hypothetical protein RchiOBHm_Chr1g0340821 [Rosa chinensis])

HSP 1 Score: 53.9 bits (128), Expect = 6.4e-04
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 0

Query: 3  GEPENGG---------SKAAKIVGAVVGFATFIGIVASLLSADSGTIGDRKMMKAPGKQG 62
          G+ ENGG         SKAA   GA+ G AT    VA L+S  +    ++K MKAPG+  
Sbjct: 16 GQGENGGASSSGYSWFSKAAVAAGAIAGLATAALAVAELVSGSTSLEEEKKTMKAPGRD- 75

Query: 63 EQIYRDEFEKDPSKY 69
          E+IYR++FE+DP  Y
Sbjct: 76 ERIYREDFERDPKSY 89

BLAST of CcUC05G105880 vs. ExPASy TrEMBL
Match: A0A5A7SYF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00210 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.3e-22
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 1  MCGEPENGGSKAAKIVGAVVGFATFIGIVASLL-SADSGTIGDRKMMKAPGKQGEQIYRD 60
          M GEP+NGGSKAAKIVGAVVGFATFIG VAS+L SADS T GDRKMMKAPGK GE++YRD
Sbjct: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD 60

Query: 61 EFEKDPSKY 69
          EFEKDPSKY
Sbjct: 61 EFEKDPSKY 69

BLAST of CcUC05G105880 vs. ExPASy TrEMBL
Match: A0A0A0KW91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606810 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-22
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 1  MCGEPENGGSKAAKIVGAVVGFATFIGIVASLLSADSGTIGDRKMMKAPGKQGEQIYRDE 60
          M GEP+NGGSKAAKIVGAVVGFATFIG VAS+ SADS T GDR+ MKAPGK GE++YRDE
Sbjct: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMFSADSETAGDRRTMKAPGKHGEEMYRDE 60

Query: 61 FEKDPSKY 69
          FEKDPSKY
Sbjct: 61 FEKDPSKY 68

BLAST of CcUC05G105880 vs. ExPASy TrEMBL
Match: A0A2P6SDL2 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0340821 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-04
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 0

Query: 3  GEPENGG---------SKAAKIVGAVVGFATFIGIVASLLSADSGTIGDRKMMKAPGKQG 62
          G+ ENGG         SKAA   GA+ G AT    VA L+S  +    ++K MKAPG+  
Sbjct: 16 GQGENGGASSSGYSWFSKAAVAAGAIAGLATAALAVAELVSGSTSLEEEKKTMKAPGRD- 75

Query: 63 EQIYRDEFEKDPSKY 69
          E+IYR++FE+DP  Y
Sbjct: 76 ERIYREDFERDPKSY 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0034481.16.8e-2285.51hypothetical protein E6C27_scaffold65G004930 [Cucumis melo var. makuwa] >TYK0903... [more]
KAG6574034.15.6e-1670.59hypothetical protein SDJN03_27921, partial [Cucurbita argyrosperma subsp. sorori... [more]
PRQ56758.16.4e-0444.00hypothetical protein RchiOBHm_Chr1g0340821 [Rosa chinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SYF63.3e-2285.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KW914.3e-2282.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606810 PE=4 SV=1[more]
A0A2P6SDL23.1e-0444.00Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0340821 PE=4... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G105880.1CcUC05G105880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane