CcUC05G105840 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G105840
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr05: 33227894 .. 33228389 (+)
RNA-Seq ExpressionCcUC05G105840
SyntenyCcUC05G105840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAAAACAAATATGGGAGGCAACAAAGAGAATTTGTTTTGGTCAATTATAAAGTCTTTCATTAATTTCTTACCTGGTTTCAATGGTGGAAATGCAGAGGCATCCAAAGCTGCAGCGGCTCCATCTGGGCCAGAGGCTGCCATGGTAGCCGCAGCAAAGCATTTCTCTTCTGCTCACAAGGTGCTGTTCGGTTAGGTTTGTGTTCATCCATATGTCCACGTAGCCAATGTCTACTACTTCATACATGCTCGAGCAAGACCTGGTCCTCTGCAGCTCAACAAACATCCATCAGTTTCAAATAATTTTATGTAGCTCTGAACCATTTTCGGTCCAGATAAATTTATTTGGTTGCCTGAAATCTTGGCTTGACTTGGTTGCCAAACATGGAAGGCCCAGGTCATCAAGTTATGTAATGTCGAATACTCCCTGCTTCATCATGTATTCTTTCAAGATTTTCCAATTCATTACAATGACACAGTTACATATTGGATAA

mRNA sequence

ATGTCAAAAACAAATATGGGAGGCAACAAAGAGAATTTGTTTTGGTCAATTATAAAGTCTTTCATTAATTTCTTACCTGGTTTCAATGGTGGAAATGCAGAGGCATCCAAAGCTGCAGCGGCTCCATCTGGGCCAGAGGCTGCCATGGTAGCCGCAGCAAAGCATTTCTCTTCTGCTCACAAGGTGCTGTTCGACCTGGTCCTCTGCAGCTCAACAAACATCCATCAGTTTCAAATAATTTTATGTAGCTCTGAACCATTTTCGGTCCAGATAAATTTATTTGGTTGCCTGAAATCTTGGCTTGACTTGGTTGCCAAACATGGAAGGCCCAGGTCATCAAGTTATGTAATGTCGAATACTCCCTGCTTCATCATGTATTCTTTCAAGATTTTCCAATTCATTACAATGACACAGTTACATATTGGATAA

Coding sequence (CDS)

ATGTCAAAAACAAATATGGGAGGCAACAAAGAGAATTTGTTTTGGTCAATTATAAAGTCTTTCATTAATTTCTTACCTGGTTTCAATGGTGGAAATGCAGAGGCATCCAAAGCTGCAGCGGCTCCATCTGGGCCAGAGGCTGCCATGGTAGCCGCAGCAAAGCATTTCTCTTCTGCTCACAAGGTGCTGTTCGACCTGGTCCTCTGCAGCTCAACAAACATCCATCAGTTTCAAATAATTTTATGTAGCTCTGAACCATTTTCGGTCCAGATAAATTTATTTGGTTGCCTGAAATCTTGGCTTGACTTGGTTGCCAAACATGGAAGGCCCAGGTCATCAAGTTATGTAATGTCGAATACTCCCTGCTTCATCATGTATTCTTTCAAGATTTTCCAATTCATTACAATGACACAGTTACATATTGGATAA

Protein sequence

MSKTNMGGNKENLFWSIIKSFINFLPGFNGGNAEASKAAAAPSGPEAAMVAAAKHFSSAHKVLFDLVLCSSTNIHQFQIILCSSEPFSVQINLFGCLKSWLDLVAKHGRPRSSSYVMSNTPCFIMYSFKIFQFITMTQLHIG
Homology
[Close]
BLAST of CcUC05G105840 vs. NCBI nr
Match: KGN51999.1 (hypothetical protein Csa_008139 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 8.7e-24
Identity = 70/117 (59.83%), Postives = 72/117 (61.54%), Query Frame = 0 

Query: 6   MGGNKENLFWSIIKSFINFLPGFNGGNAEASKAAAAPSGPEAAMVAAAKHFSSAHKVLFD 65
           MG  KENL WSIIKSFIN L G N GNA+AS AA +PSGPEAAMVAAAKHFSSAHK    
Sbjct: 1   MGDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPSGPEAAMVAAAKHFSSAHK---- 60

Query: 66  LVLCSSTNIHQFQIILCSSEPFSVQINLFGCLKSWLDLVAKHGRPRSSSYVMSNTPC 123
                                       FG LKSWLDLV KH R RSSSYVMSNTPC
Sbjct: 61  ----------------------------FGYLKSWLDLVVKHERRRSSSYVMSNTPC 85

[Close]
BLAST of CcUC05G105840 vs. NCBI nr
Match: KAG6574028.1 (hypothetical protein SDJN03_27915, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 3.9e-08
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 12 NLFWSIIKSFINFLPGFNGGNAEASKAAAA------PSGPEAAMVAAAKHFSSAHKV 63
          NL WS +KSFI  L GFNGG+ EA+ AAAA      P+GPEAAMVAAAKHFSSAHK+
Sbjct: 2  NLIWSTLKSFIYCLLGFNGGSPEAAMAAAAAAAPSPPTGPEAAMVAAAKHFSSAHKL 58

[Close]
BLAST of CcUC05G105840 vs. NCBI nr
Match: KAE9615455.1 (hypothetical protein Lalb_Chr04g0255411 [Lupinus albus])

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 8  GNKENLFWSIIKSFINFLPGFNGGNAEASKAAAAPSGPEAAMVAAAKHFSSAHKVLFD 66
          GNK+N F  I++SF +    F G + + S  A+APS PEA MVAAAKHFSSAHKV F+
Sbjct: 5  GNKKNWFLHILRSFTSL---FCGKDVKTSTKASAPSVPEATMVAAAKHFSSAHKVKFN 59

[Close]
BLAST of CcUC05G105840 vs. NCBI nr
Match: KAF1869248.1 (hypothetical protein Lal_00020923 [Lupinus albus])

HSP 1 Score: 54.7 bits (130), Expect = 7.6e-04
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 8  GNKENLFWSIIKSFINFLPGFNGGNAEASKAAAAPSGPEAAMVAAAKHFSSAHKV 63
          GNK+N F  I++SF +    F G + + S  A+APS PEA MVAAAKHFSSAHKV
Sbjct: 5  GNKKNWFLHILRSFTSL---FCGKDVKTSTKASAPSVPEATMVAAAKHFSSAHKV 56

[Close]
BLAST of CcUC05G105840 vs. ExPASy TrEMBL
Match: A0A0A0KT12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606890 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.2e-24
Identity = 70/117 (59.83%), Postives = 72/117 (61.54%), Query Frame = 0 

Query: 6   MGGNKENLFWSIIKSFINFLPGFNGGNAEASKAAAAPSGPEAAMVAAAKHFSSAHKVLFD 65
           MG  KENL WSIIKSFIN L G N GNA+AS AA +PSGPEAAMVAAAKHFSSAHK    
Sbjct: 1   MGDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPSGPEAAMVAAAKHFSSAHK---- 60

Query: 66  LVLCSSTNIHQFQIILCSSEPFSVQINLFGCLKSWLDLVAKHGRPRSSSYVMSNTPC 123
                                       FG LKSWLDLV KH R RSSSYVMSNTPC
Sbjct: 61  ----------------------------FGYLKSWLDLVVKHERRRSSSYVMSNTPC 85

[Close]
BLAST of CcUC05G105840 vs. ExPASy TrEMBL
Match: A0A6A4QLI0 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr04g0255411 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.7e-05
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 8  GNKENLFWSIIKSFINFLPGFNGGNAEASKAAAAPSGPEAAMVAAAKHFSSAHKVLFD 66
          GNK+N F  I++SF +    F G + + S  A+APS PEA MVAAAKHFSSAHKV F+
Sbjct: 5  GNKKNWFLHILRSFTSL---FCGKDVKTSTKASAPSVPEATMVAAAKHFSSAHKVKFN 59

[Close]
BLAST of CcUC05G105840 vs. ExPASy TrEMBL
Match: A0A6A5M9S6 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00020923 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.7e-04
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 8  GNKENLFWSIIKSFINFLPGFNGGNAEASKAAAAPSGPEAAMVAAAKHFSSAHKV 63
          GNK+N F  I++SF +    F G + + S  A+APS PEA MVAAAKHFSSAHKV
Sbjct: 5  GNKKNWFLHILRSFTSL---FCGKDVKTSTKASAPSVPEATMVAAAKHFSSAHKV 56

The following BLAST results are available for this feature:
BLAST of CcUC05G105840 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51999.18.7e-2459.83hypothetical protein Csa_008139 [Cucumis sativus][more]
KAG6574028.13.9e-0868.42hypothetical protein SDJN03_27915, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE9615455.12.0e-0456.90hypothetical protein Lalb_Chr04g0255411 [Lupinus albus][more]
KAF1869248.17.6e-0458.18hypothetical protein Lal_00020923 [Lupinus albus][more]
BLAST of CcUC05G105840 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC05G105840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT124.2e-2459.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606890 PE=4 SV=1[more]
A0A6A4QLI09.7e-0556.90Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr04g0255411 PE=4 SV=1[more]
A0A6A5M9S63.7e-0458.18Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00020923 PE=4 SV=1[more]
BLAST of CcUC05G105840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G105840.1CcUC05G105840.1mRNA