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CcUC05G105220 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGTCTTCCTCCGTTCCTAAGACCTCCGCTATTCCCAGTCCCCACCTCTGAAAACCAATCACTCCACTTCGCTTTTTCTATTGAAATTTTTAACCTTTAGAGGAATCAGAAAAATTATTTTCCATCGGAACTGATTTTCCCTTCCAGATAGAAAGGAAGAGAAGTCATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCACCCAATCATGTCTTCAACCCCAAACCGGGTACAGCTACTTTTATTGACTATTTTTCTTCTTTAATAATCGTTAAATCATCTTGGGTTTTTGCTGATTTTGATCCGCCATTTCTGATTCCTTGAGAAAGTTCATATTCGTCATCTTTCTCATCTCTATCACTTTCCCGTTCGGTTTGACCTTAATTCTGTGTTGTAATCTTTAATCTCGACTTATATTGACGTCTAAATAAGTTCAGTAGCTTTTACCAAGATATTTGATGATCCCAACTGATCTCTGAAGTTGTCATGCTTGTGCCTCTCTTGCCATGCTTATCTGTTTCCATTGCGCTAATTGGAATAATTTGATAGCGAGAAACCAGCAATTCTATAGAATGTACCTTAAGACCAAAACGTGCAATATTTTTGGTGGAAAGAGGATTTTCTCTGTGTATGCTGCTGATATCTTGAATGGATTATATCCCATTGTTCCAGAATCTTCTGTTGTGTGGCATCTTCCCTATGCTAGATTTATAGAAGAATCAATCTTCTTTTTTGGTCCCAGTGTGGTTTATAAGCTTCCTAGAATATGGTATCCCACTTCAATTTCCCATCTTATAGCTATTCTTCTATAATTCCCCCCTTTGTACTTTGCTTTATAAGCTATATTCTTTTTTGCATATGGCTTAGTTGTCAATCACGTTGGAAGCTCCATTGTTTCTGGCTATCAATGGATTAATCTACTTTCTATTCTTTTGAAGATTGAGATTACTTTTTTTTTTTTTTTTACTTACTTTATTGATTCCATTGCTTTATTTGTTTATATTTATATCATTAGATTCTTTCTTCCCATTTTGCAACTTTTTCTTATTTTTCAAAGCGCAGCACTATGATTGGATTAGCAATGGATAATATTAGCTTCTTATAAAAGTTTAATTTCAGGGGACAGAAGCTCTGTGTGTAAAGGACTATGCTCTAACTTTGGCGCATCGGTTGTTAAATCAGCACCAACAGCAGGAAGAGGAGGAGGGTTGTTGGAGAGACCTGTTATTGAGAAAGCAACTCCTGGAAGAGAATCCGAGTTTGATTTGAGGTATTAAACATTAGACCGTACAGTTATGTATTGAAAAGACTACTATATACTGAACTAGAAAAGGGGACAAAGAAAGAATAAAGTATACCAGTTAAAGGCCTTAAAGAGATGGACAGATTCTGGTGTAGGGTCATCCGAAGACCAACGGTTAGATAGTTTTCAATAATCTTTACCATTTGAATTCTAAATCAGGACTACTGCTCTTACGCTATGCATCTCTTTATTGTTCATGTATTGTATAAATCATTTTGTGTTGCCAATGTAATACTTTGGATGATTTTTGAGACAATGTCAGCTATGCTATGTTGACCTTTGCGTGGGAACACCGAAACCAAAGCATCTTTATTTATATGAATTACAGCATTTGTTTTTGGAGTTAGCCTTTTTGCTTGTAGCTCAACCAATTGTCAATCTGTCATTAACTGAAACTTAATACATTGACTTTTGTTTCTGAATATTCAGAAGGATTTGCATTAAAAGAATTGCAGTATAAAGTAAAGGGGGAAAAAGGAGTGGTTATGAGCCTGAATTGCAACTGTTGAAAATCACTGATTTTTTTCTTTCTTGACTGTACAAATGAAACCAAGTAGCTAAGTTCTTGTGACTTGGGCAGATTTCTGGTTAATTAGCAGGATGTTGAAATTAATTCTGAGTGTTTCATTGTATAACTTCATTCTGCATAAATGTGCTGACTTCAATTTTCTCTGTTGGATAGTTATTTTCGATAGAACAATACAGCATATATGTAACTAATCATTCTGTATCAACGAAATCATTCAGGAGATCAAGGAAAATGACACCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTCGTTCAAGTCCTGATGAAGGTCATCCCTGGAATGACACTCGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGGTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGGCTGTTAAGTTCAATTGAACCTGCTAGTGGTGGATGCTGTTAAGCCTTTTTTCTCCATTGGAATATACATCCATGTGTATTCAAGCTTGTCTTCATAACTGAAGGGATGAAGATGGGCTGGGATTAGAAAAGAAAAAAGAAAGAAC CGTCTTCCTCCGTTCCTAAGACCTCCGCTATTCCCAGTCCCCACCTCTGAAAACCAATCACTCCACTTCGCTTTTTCTATTGAAATTTTTAACCTTTAGAGGAATCAGAAAAATTATTTTCCATCGGAACTGATTTTCCCTTCCAGATAGAAAGGAAGAGAAGTCATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCACCCAATCATGTCTTCAACCCCAAACCGGGGGACAGAAGCTCTGTGTGTAAAGGACTATGCTCTAACTTTGGCGCATCGGTTGTTAAATCAGCACCAACAGCAGGAAGAGGAGGAGGGTTGTTGGAGAGACCTGTTATTGAGAAAGCAACTCCTGGAAGAGAATCCGAGTTTGATTTGAGGAGATCAAGGAAAATGACACCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTCGTTCAAGTCCTGATGAAGGTCATCCCTGGAATGACACTCGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGGTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGGCTGTTAAGTTCAATTGAACCTGCTAGTGGTGGATGCTGTTAAGCCTTTTTTCTCCATTGGAATATACATCCATGTGTATTCAAGCTTGTCTTCATAACTGAAGGGATGAAGATGGGCTGGGATTAGAAAAGAAAAAAGAAAGAAC ATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCACCCAATCATGTCTTCAACCCCAAACCGGGGGACAGAAGCTCTGTGTGTAAAGGACTATGCTCTAACTTTGGCGCATCGGTTGTTAAATCAGCACCAACAGCAGGAAGAGGAGGAGGGTTGTTGGAGAGACCTGTTATTGAGAAAGCAACTCCTGGAAGAGAATCCGAGTTTGATTTGAGGAGATCAAGGAAAATGACACCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTCGTTCAAGTCCTGATGAAGGTCATCCCTGGAATGACACTCGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGGTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGGCTGTTAAGTTCAATTGAACCTGCTAGTGGTGGATGCTGTTAA MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEKATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC Homology
BLAST of CcUC05G105220 vs. NCBI nr
Match: XP_038891525.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Benincasa hispida]) HSP 1 Score: 322.0 bits (824), Expect = 2.9e-84 Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0
BLAST of CcUC05G105220 vs. NCBI nr
Match: XP_008446565.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Cucumis melo] >KAA0034534.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa] >TYK09088.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa]) HSP 1 Score: 318.2 bits (814), Expect = 4.1e-83 Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0
BLAST of CcUC05G105220 vs. NCBI nr
Match: XP_011655763.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus]) HSP 1 Score: 313.9 bits (803), Expect = 7.8e-82 Identity = 155/159 (97.48%), Postives = 155/159 (97.48%), Query Frame = 0
BLAST of CcUC05G105220 vs. NCBI nr
Match: XP_022150471.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Momordica charantia]) HSP 1 Score: 307.4 bits (786), Expect = 7.3e-80 Identity = 147/159 (92.45%), Postives = 155/159 (97.48%), Query Frame = 0
BLAST of CcUC05G105220 vs. NCBI nr
Match: XP_022968529.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 303.9 bits (777), Expect = 8.1e-79 Identity = 152/160 (95.00%), Postives = 153/160 (95.62%), Query Frame = 0
BLAST of CcUC05G105220 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 3.2e-62 Identity = 114/159 (71.70%), Postives = 135/159 (84.91%), Query Frame = 0
BLAST of CcUC05G105220 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 2.5e-22 Identity = 56/130 (43.08%), Postives = 82/130 (63.08%), Query Frame = 0
BLAST of CcUC05G105220 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 2.6e-19 Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 0
BLAST of CcUC05G105220 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16 Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0
BLAST of CcUC05G105220 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 2.5e-14 Identity = 45/115 (39.13%), Postives = 64/115 (55.65%), Query Frame = 0
BLAST of CcUC05G105220 vs. ExPASy TrEMBL
Match: A0A5A7STJ9 (ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00780 PE=3 SV=1) HSP 1 Score: 318.2 bits (814), Expect = 2.0e-83 Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0
BLAST of CcUC05G105220 vs. ExPASy TrEMBL
Match: A0A1S3BG61 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489260 PE=3 SV=1) HSP 1 Score: 318.2 bits (814), Expect = 2.0e-83 Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0
BLAST of CcUC05G105220 vs. ExPASy TrEMBL
Match: A0A0A0KWD9 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608440 PE=3 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 3.8e-82 Identity = 155/159 (97.48%), Postives = 155/159 (97.48%), Query Frame = 0
BLAST of CcUC05G105220 vs. ExPASy TrEMBL
Match: A0A6J1DBL1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018609 PE=3 SV=1) HSP 1 Score: 307.4 bits (786), Expect = 3.5e-80 Identity = 147/159 (92.45%), Postives = 155/159 (97.48%), Query Frame = 0
BLAST of CcUC05G105220 vs. ExPASy TrEMBL
Match: A0A6J1HZX0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467734 PE=4 SV=1) HSP 1 Score: 303.9 bits (777), Expect = 3.9e-79 Identity = 152/160 (95.00%), Postives = 153/160 (95.62%), Query Frame = 0
BLAST of CcUC05G105220 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein ) HSP 1 Score: 239.2 bits (609), Expect = 2.3e-63 Identity = 114/159 (71.70%), Postives = 135/159 (84.91%), Query Frame = 0
BLAST of CcUC05G105220 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein ) HSP 1 Score: 171.4 bits (433), Expect = 5.8e-43 Identity = 89/159 (55.97%), Postives = 106/159 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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