CcUC05G105220 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G105220
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic
Location	CicolChr05: 32715233 .. 32717650 (-)
RNA-Seq Expression	CcUC05G105220
Synteny	CcUC05G105220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCTTCCTCCGTTCCTAAGACCTCCGCTATTCCCAGTCCCCACCTCTGAAAACCAATCACTCCACTTCGCTTTTTCTATTGAAATTTTTAACCTTTAGAGGAATCAGAAAAATTATTTTCCATCGGAACTGATTTTCCCTTCCAGATAGAAAGGAAGAGAAGTCATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCACCCAATCATGTCTTCAACCCCAAACCGGGTACAGCTACTTTTATTGACTATTTTTCTTCTTTAATAATCGTTAAATCATCTTGGGTTTTTGCTGATTTTGATCCGCCATTTCTGATTCCTTGAGAAAGTTCATATTCGTCATCTTTCTCATCTCTATCACTTTCCCGTTCGGTTTGACCTTAATTCTGTGTTGTAATCTTTAATCTCGACTTATATTGACGTCTAAATAAGTTCAGTAGCTTTTACCAAGATATTTGATGATCCCAACTGATCTCTGAAGTTGTCATGCTTGTGCCTCTCTTGCCATGCTTATCTGTTTCCATTGCGCTAATTGGAATAATTTGATAGCGAGAAACCAGCAATTCTATAGAATGTACCTTAAGACCAAAACGTGCAATATTTTTGGTGGAAAGAGGATTTTCTCTGTGTATGCTGCTGATATCTTGAATGGATTATATCCCATTGTTCCAGAATCTTCTGTTGTGTGGCATCTTCCCTATGCTAGATTTATAGAAGAATCAATCTTCTTTTTTGGTCCCAGTGTGGTTTATAAGCTTCCTAGAATATGGTATCCCACTTCAATTTCCCATCTTATAGCTATTCTTCTATAATTCCCCCCTTTGTACTTTGCTTTATAAGCTATATTCTTTTTTGCATATGGCTTAGTTGTCAATCACGTTGGAAGCTCCATTGTTTCTGGCTATCAATGGATTAATCTACTTTCTATTCTTTTGAAGATTGAGATTACTTTTTTTTTTTTTTTTACTTACTTTATTGATTCCATTGCTTTATTTGTTTATATTTATATCATTAGATTCTTTCTTCCCATTTTGCAACTTTTTCTTATTTTTCAAAGCGCAGCACTATGATTGGATTAGCAATGGATAATATTAGCTTCTTATAAAAGTTTAATTTCAGGGGACAGAAGCTCTGTGTGTAAAGGACTATGCTCTAACTTTGGCGCATCGGTTGTTAAATCAGCACCAACAGCAGGAAGAGGAGGAGGGTTGTTGGAGAGACCTGTTATTGAGAAAGCAACTCCTGGAAGAGAATCCGAGTTTGATTTGAGGTATTAAACATTAGACCGTACAGTTATGTATTGAAAAGACTACTATATACTGAACTAGAAAAGGGGACAAAGAAAGAATAAAGTATACCAGTTAAAGGCCTTAAAGAGATGGACAGATTCTGGTGTAGGGTCATCCGAAGACCAACGGTTAGATAGTTTTCAATAATCTTTACCATTTGAATTCTAAATCAGGACTACTGCTCTTACGCTATGCATCTCTTTATTGTTCATGTATTGTATAAATCATTTTGTGTTGCCAATGTAATACTTTGGATGATTTTTGAGACAATGTCAGCTATGCTATGTTGACCTTTGCGTGGGAACACCGAAACCAAAGCATCTTTATTTATATGAATTACAGCATTTGTTTTTGGAGTTAGCCTTTTTGCTTGTAGCTCAACCAATTGTCAATCTGTCATTAACTGAAACTTAATACATTGACTTTTGTTTCTGAATATTCAGAAGGATTTGCATTAAAAGAATTGCAGTATAAAGTAAAGGGGGAAAAAGGAGTGGTTATGAGCCTGAATTGCAACTGTTGAAAATCACTGATTTTTTTCTTTCTTGACTGTACAAATGAAACCAAGTAGCTAAGTTCTTGTGACTTGGGCAGATTTCTGGTTAATTAGCAGGATGTTGAAATTAATTCTGAGTGTTTCATTGTATAACTTCATTCTGCATAAATGTGCTGACTTCAATTTTCTCTGTTGGATAGTTATTTTCGATAGAACAATACAGCATATATGTAACTAATCATTCTGTATCAACGAAATCATTCAGGAGATCAAGGAAAATGACACCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTCGTTCAAGTCCTGATGAAGGTCATCCCTGGAATGACACTCGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGGTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGGCTGTTAAGTTCAATTGAACCTGCTAGTGGTGGATGCTGTTAAGCCTTTTTTCTCCATTGGAATATACATCCATGTGTATTCAAGCTTGTCTTCATAACTGAAGGGATGAAGATGGGCTGGGATTAGAAAAGAAAAAAGAAAGAAC

mRNA sequence

CGTCTTCCTCCGTTCCTAAGACCTCCGCTATTCCCAGTCCCCACCTCTGAAAACCAATCACTCCACTTCGCTTTTTCTATTGAAATTTTTAACCTTTAGAGGAATCAGAAAAATTATTTTCCATCGGAACTGATTTTCCCTTCCAGATAGAAAGGAAGAGAAGTCATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCACCCAATCATGTCTTCAACCCCAAACCGGGGGACAGAAGCTCTGTGTGTAAAGGACTATGCTCTAACTTTGGCGCATCGGTTGTTAAATCAGCACCAACAGCAGGAAGAGGAGGAGGGTTGTTGGAGAGACCTGTTATTGAGAAAGCAACTCCTGGAAGAGAATCCGAGTTTGATTTGAGGAGATCAAGGAAAATGACACCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTCGTTCAAGTCCTGATGAAGGTCATCCCTGGAATGACACTCGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGGTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGGCTGTTAAGTTCAATTGAACCTGCTAGTGGTGGATGCTGTTAAGCCTTTTTTCTCCATTGGAATATACATCCATGTGTATTCAAGCTTGTCTTCATAACTGAAGGGATGAAGATGGGCTGGGATTAGAAAAGAAAAAAGAAAGAAC

Coding sequence (CDS)

ATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCACCCAATCATGTCTTCAACCCCAAACCGGGGGACAGAAGCTCTGTGTGTAAAGGACTATGCTCTAACTTTGGCGCATCGGTTGTTAAATCAGCACCAACAGCAGGAAGAGGAGGAGGGTTGTTGGAGAGACCTGTTATTGAGAAAGCAACTCCTGGAAGAGAATCCGAGTTTGATTTGAGGAGATCAAGGAAAATGACACCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTCGTTCAAGTCCTGATGAAGGTCATCCCTGGAATGACACTCGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGGTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGGCTGTTAAGTTCAATTGAACCTGCTAGTGGTGGATGCTGTTAA

Protein sequence

MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEKATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

Homology

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BLAST of CcUC05G105220 vs. NCBI nr
Match: XP_038891525.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 322.0 bits (824), Expect = 2.9e-84
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEK 60
           MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEK
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFDLR+SRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRKSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
            NGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 CNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

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BLAST of CcUC05G105220 vs. NCBI nr
Match: XP_008446565.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Cucumis melo] >KAA0034534.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa] >TYK09088.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa])

HSP 1 Score: 318.2 bits (814), Expect = 4.1e-83
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEK 60
           MEIAICGKLA+SPNHVFNPKPGDRSS+CKGLC NFGASVVKSA TAGRGGGLLERPVIEK
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFD+RRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of CcUC05G105220 vs. NCBI nr
Match: XP_011655763.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus])

HSP 1 Score: 313.9 bits (803), Expect = 7.8e-82
Identity = 155/159 (97.48%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEK 60
           MEIAI GKLALSPNHVFNPKPGDRSSVCKGLC NFGASVVKSA TAGRGGGLLERPVIEK
Sbjct: 1   MEIAIRGKLALSPNHVFNPKPGDRSSVCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAE HCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEGHCMQLRGNGLLSSIEPASGGCC 159

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BLAST of CcUC05G105220 vs. NCBI nr
Match: XP_022150471.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Momordica charantia])

HSP 1 Score: 307.4 bits (786), Expect = 7.3e-80
Identity = 147/159 (92.45%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEK 60
           MEIAICGKLALSPNHVFNP+PGD++ VC+GLCS+ GA++VKSA TAG+GGGLLERPVIEK
Sbjct: 1   MEIAICGKLALSPNHVFNPQPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFDLRRSRK TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

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BLAST of CcUC05G105220 vs. NCBI nr
Match: XP_022968529.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 303.9 bits (777), Expect = 8.1e-79
Identity = 152/160 (95.00%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGR-GGGLLERPVIE 60
           MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCS   ASVVKSA TAGR GGGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFDLRRSRK TPPYRVILHNDDFN+REYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           H NGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 HCNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160

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BLAST of CcUC05G105220 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.2e-62
Identity = 114/159 (71.70%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTA-GRGGGLLERPVIE 60
           ME AICG+LAL+P+ +FN K GD+  V KG C N    +  S   A G+GGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           K TPGRESEFDLR+S+K+ PPYRVILHND+FNKREYVVQVLMKVIPGMT+DNAVNIMQEA
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC 159
           H NGL++VI+CAQADAE+HCMQLRGNGLLSS+EP  GGC
Sbjct: 121 HINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

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BLAST of CcUC05G105220 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-22
Identity = 56/130 (43.08%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 29  KGLCSNFGASVVKSAPTAGRGGGLLERPVIEKATPGRESEFDLRRSRKMTPPYRVILHND 88
           +G    F     ++       GG+++ P     T  ++    + RS+K  P Y+V+LHND
Sbjct: 40  QGAFGTFAPQTTRTFVVTWAKGGVMDAP-----TTTQQPASGVERSQKRPPIYKVLLHND 99

Query: 89  DFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLL 148
           ++NKREYVV+VL+KV+  +T+D+AV  MQEAH  G++LV+ C Q +AE +C  LR NGL 
Sbjct: 100 NYNKREYVVKVLLKVVEQITVDDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLT 159

Query: 149 SSIEPASGGC 159
           S+IEP  GGC
Sbjct: 160 STIEP--GGC 162

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BLAST of CcUC05G105220 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-19
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 75  RKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQAD 134
           RK+ P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEEHCMQLRGNGLLSSIEP 154
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

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BLAST of CcUC05G105220 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 75  RKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQAD 134
           RK+ P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEEHCMQLRGNGL 148
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

[Close]

BLAST of CcUC05G105220 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-14
Identity = 45/115 (39.13%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 39  VVKSAPTAGRGGGLLERPVIEKATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQ 98
           + +  PT   GG      V++KA           R RK +P Y+V+LHND  N  EYV+ 
Sbjct: 1   MAEETPTRSPGGA----AVLDKAP---------ERVRKRSPRYKVLLHNDPVNSMEYVMT 60

Query: 99  VLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEP 154
            L +V+P ++  +A+ +M EAH  G+ LVI+C    AE +C  L+  GL SSIEP
Sbjct: 61  TLRQVVPQLSEQDAMAVMLEAHNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

[Close]

BLAST of CcUC05G105220 vs. ExPASy TrEMBL
Match: A0A5A7STJ9 (ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00780 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.0e-83
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEK 60
           MEIAICGKLA+SPNHVFNPKPGDRSS+CKGLC NFGASVVKSA TAGRGGGLLERPVIEK
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFD+RRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of CcUC05G105220 vs. ExPASy TrEMBL
Match: A0A1S3BG61 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489260 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.0e-83
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEK 60
           MEIAICGKLA+SPNHVFNPKPGDRSS+CKGLC NFGASVVKSA TAGRGGGLLERPVIEK
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFD+RRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of CcUC05G105220 vs. ExPASy TrEMBL
Match: A0A0A0KWD9 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608440 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 3.8e-82
Identity = 155/159 (97.48%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEK 60
           MEIAI GKLALSPNHVFNPKPGDRSSVCKGLC NFGASVVKSA TAGRGGGLLERPVIEK
Sbjct: 1   MEIAIRGKLALSPNHVFNPKPGDRSSVCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAE HCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEGHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of CcUC05G105220 vs. ExPASy TrEMBL
Match: A0A6J1DBL1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018609 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.5e-80
Identity = 147/159 (92.45%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEK 60
           MEIAICGKLALSPNHVFNP+PGD++ VC+GLCS+ GA++VKSA TAG+GGGLLERPVIEK
Sbjct: 1   MEIAICGKLALSPNHVFNPQPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFDLRRSRK TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of CcUC05G105220 vs. ExPASy TrEMBL
Match: A0A6J1HZX0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467734 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.9e-79
Identity = 152/160 (95.00%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGR-GGGLLERPVIE 60
           MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCS   ASVVKSA TAGR GGGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFDLRRSRK TPPYRVILHNDDFN+REYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           H NGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 HCNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160

[Close]

BLAST of CcUC05G105220 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 239.2 bits (609), Expect = 2.3e-63
Identity = 114/159 (71.70%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTA-GRGGGLLERPVIE 60
           ME AICG+LAL+P+ +FN K GD+  V KG C N    +  S   A G+GGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           K TPGRESEFDLR+S+K+ PPYRVILHND+FNKREYVVQVLMKVIPGMT+DNAVNIMQEA
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC 159
           H NGL++VI+CAQADAE+HCMQLRGNGLLSS+EP  GGC
Sbjct: 121 HINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of CcUC05G105220 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 171.4 bits (433), Expect = 5.8e-43
Identity = 89/159 (55.97%), Postives = 106/159 (66.67%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTA-GRGGGLLERPVIE 60
           ME AICG+LAL+P+ +FN K GD+  V KG C N    +  S   A G+GGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           K TPGRESEFDLR+S+K+ PPYRVILHND+FNKREYVVQVLMK                 
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMK----------------- 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC 159
                        ADAE+HCMQLRGNGLLSS+EP  GGC
Sbjct: 121 -------------ADAEQHCMQLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of CcUC05G105220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891525.1	2.9e-84	98.74	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 ...	[more]
XP_008446565.1	4.1e-83	96.86	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]
XP_011655763.1	7.8e-82	97.48	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus...	[more]
XP_022150471.1	7.3e-80	92.45	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Momordica chara...	[more]
XP_022968529.1	8.1e-79	95.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]

BLAST of CcUC05G105220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	3.2e-62	71.70	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	2.5e-22	43.08	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	2.6e-19	59.49	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.2e-16	57.53	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	2.5e-14	39.13	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of CcUC05G105220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STJ9	2.0e-83	96.86	ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BG61	2.0e-83	96.86	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A0A0KWD9	3.8e-82	97.48	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608440 PE=3 S...	[more]
A0A6J1DBL1	3.5e-80	92.45	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Momordica cha...	[more]
A0A6J1HZX0	3.9e-79	95.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]

BLAST of CcUC05G105220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	2.3e-63	71.70	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	5.8e-43	55.97	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 78..144 e-value: 1.2E-18 score: 66.6
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 75..153 e-value: 1.8E-21 score: 77.8
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 75..153
None	No IPR available	PANTHER	PTHR33473:SF15	BNAA07G24510D PROTEIN	coord: 1..158
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 1..158
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	HAMAP	MF_00302	ClpS	coord: 61..155 score: 15.030427

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G105220.1	CcUC05G105220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008233	peptidase activity