
CcUC05G104850 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAAAGATTCTCGTTTGATTCGTAAGCCCCAGCTCCGGCAGCCCGTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCGCCGCCGCCCTCCTTACCCTTGTCCTTGTCGTTGCCGGACAGAAATTCTAACGACAATGAATCTTCGTCGTCGTCGGAGGAGGAGAATGAATGTGGAGATCAGAAACAGAGTGTAGTGCAGAGGCAGACTAATCCTTCTCTTCTCAGATATTCTTCCGATCTTACCCCGCCGTTTTCTTCCCCTGCTTTGCTTAATTCCCTGTCCCCTTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAAAGATTCTCGTTTGATTCGTAAGCCCCAGCTCCGGCAGCCCGTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCGCCGCCGCCCTCCTTACCCTTGTCCTTGTCGTTGCCGGACAGAAATTCTAACGACAATGAATCTTCGTCGTCGTCGGAGGAGGAGAATGAATGTGGAGATCAGAAACAGAGTGTAGTGCAGAGGCAGACTAATCCTTCTCTTCTCAGATATTCTTCCGATCTTACCCCGCCGTTTTCTTCCCCTGCTTTGCTTAATTCCCTGTCCCCTTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAAAGATTCTCGTTTGATTCGTAAGCCCCAGCTCCGGCAGCCCGTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCGCCGCCGCCCTCCTTACCCTTGTCCTTGTCGTTGCCGGACAGAAATTCTAACGACAATGAATCTTCGTCGTCGTCGGAGGAGGAGAATGAATGTGGAGATCAGAAACAGAGTGTAGTGCAGAGGCAGACTAATCCTTCTCTTCTCAGATATTCTTCCGATCTTACCCCGCCGTTTTCTTCCCCTGCTTTGCTTAATTCCCTGTCCCCTTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLSLSLPDRNSNDNESSSSSEEENECGDQKQSVVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF Homology
BLAST of CcUC05G104850 vs. NCBI nr
Match: XP_038893302.1 (VQ motif-containing protein 8, chloroplastic [Benincasa hispida]) HSP 1 Score: 232.6 bits (592), Expect = 2.1e-57 Identity = 128/156 (82.05%), Postives = 134/156 (85.90%), Query Frame = 0
BLAST of CcUC05G104850 vs. NCBI nr
Match: XP_008466850.1 (PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA0034563.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa] >TYK09116.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa]) HSP 1 Score: 191.0 bits (484), Expect = 7.0e-45 Identity = 102/146 (69.86%), Postives = 117/146 (80.14%), Query Frame = 0
BLAST of CcUC05G104850 vs. NCBI nr
Match: XP_022150646.1 (VQ motif-containing protein 8, chloroplastic [Momordica charantia]) HSP 1 Score: 170.2 bits (430), Expect = 1.3e-38 Identity = 107/168 (63.69%), Postives = 115/168 (68.45%), Query Frame = 0
BLAST of CcUC05G104850 vs. NCBI nr
Match: KGN52621.2 (hypothetical protein Csa_008052 [Cucumis sativus]) HSP 1 Score: 134.4 bits (337), Expect = 7.8e-28 Identity = 74/102 (72.55%), Postives = 82/102 (80.39%), Query Frame = 0
BLAST of CcUC05G104850 vs. NCBI nr
Match: KAG7013019.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 127.9 bits (320), Expect = 7.3e-26 Identity = 79/150 (52.67%), Postives = 92/150 (61.33%), Query Frame = 0
BLAST of CcUC05G104850 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11 Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0
BLAST of CcUC05G104850 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 3.4e-10 Identity = 57/158 (36.08%), Postives = 76/158 (48.10%), Query Frame = 0
BLAST of CcUC05G104850 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2) HSP 1 Score: 63.2 bits (152), Expect = 2.9e-09 Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 0
BLAST of CcUC05G104850 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 8.7e-06 Identity = 44/124 (35.48%), Postives = 55/124 (44.35%), Query Frame = 0
BLAST of CcUC05G104850 vs. ExPASy TrEMBL
Match: A0A5D3CFH5 (VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001070 PE=4 SV=1) HSP 1 Score: 191.0 bits (484), Expect = 3.4e-45 Identity = 102/146 (69.86%), Postives = 117/146 (80.14%), Query Frame = 0
BLAST of CcUC05G104850 vs. ExPASy TrEMBL
Match: A0A1S3CS67 (VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504155 PE=4 SV=1) HSP 1 Score: 191.0 bits (484), Expect = 3.4e-45 Identity = 102/146 (69.86%), Postives = 117/146 (80.14%), Query Frame = 0
BLAST of CcUC05G104850 vs. ExPASy TrEMBL
Match: A0A0A0KT78 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41 Identity = 105/150 (70.00%), Postives = 119/150 (79.33%), Query Frame = 0
BLAST of CcUC05G104850 vs. ExPASy TrEMBL
Match: A0A6J1DC48 (VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018730 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 6.2e-39 Identity = 107/168 (63.69%), Postives = 115/168 (68.45%), Query Frame = 0
BLAST of CcUC05G104850 vs. ExPASy TrEMBL
Match: A0A6P6V8N0 (VQ motif-containing protein 8, chloroplastic-like OS=Coffea arabica OX=13443 GN=LOC113717710 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 7.1e-19 Identity = 76/189 (40.21%), Postives = 100/189 (52.91%), Query Frame = 0
BLAST of CcUC05G104850 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein ) HSP 1 Score: 70.1 bits (170), Expect = 1.7e-12 Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0
BLAST of CcUC05G104850 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein ) HSP 1 Score: 66.2 bits (160), Expect = 2.4e-11 Identity = 57/158 (36.08%), Postives = 76/158 (48.10%), Query Frame = 0
BLAST of CcUC05G104850 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 ) HSP 1 Score: 63.2 bits (152), Expect = 2.1e-10 Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 0
BLAST of CcUC05G104850 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein ) HSP 1 Score: 60.8 bits (146), Expect = 1.0e-09 Identity = 42/96 (43.75%), Postives = 49/96 (51.04%), Query Frame = 0
BLAST of CcUC05G104850 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding ) HSP 1 Score: 51.6 bits (122), Expect = 6.2e-07 Identity = 44/124 (35.48%), Postives = 55/124 (44.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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