CcUC05G103960 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G103960
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionR3H domain-containing protein 2-like
LocationCicolChr05: 31718723 .. 31719168 (-)
RNA-Seq ExpressionCcUC05G103960
SyntenyCcUC05G103960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGTCATCAATCACGCCAAATTTCGTCCTTGATTCATCTTCGATCTCCGTTTTGATGCATTTTCTCTCCATTTCTTCTCTTGCTGCAACCGTCGCCATCAATCACGCCAAATTTCGTCCCTCCATTGATCTTTATGTACTGCCGCTTTCCGATTCCGAAAACCTAATTCCTTGAGATTTAGCTTGCAATCGGTGTTTTCGGTCACCTGCTGCATTTTTTCCCTCTAATGCCTGCATTCCTGCCAGGAGTTTAGAGTTTCGGTCCTTTGTTTTACCATGGAGGGCTCTGTAGCGGAGGATATCGAAGGTCCTGAGTCATGGAAGGTCGCAGCGTTGGATGAGGCCGTGAGACAATTGAATTCCAAATCCTTGGAGCATTTTGTTGTCGGTGCTGCTCTCTCAGATCGTTGGATTGCTGGTGAAATGTCCGAGGATTCTATCACTCAG

mRNA sequence

TCGTCATCAATCACGCCAAATTTCGTCCTTGATTCATCTTCGATCTCCGTTTTGATGCATTTTCTCTCCATTTCTTCTCTTGCTGCAACCGTCGCCATCAATCACGCCAAATTTCGTCCCTCCATTGATCTTTATGAGTTTAGAGTTTCGGTCCTTTGTTTTACCATGGAGGGCTCTGTAGCGGAGGATATCGAAGGTCCTGAGTCATGGAAGGTCGCAGCGTTGGATGAGGCCGTGAGACAATTGAATTCCAAATCCTTGGAGCATTTTGTTGTCGGTGCTGCTCTCTCAGATCGTTGGATTGCTGGTGAAATGTCCGAGGATTCTATCACTCAG

Coding sequence (CDS)

TCGTCATCAATCACGCCAAATTTCGTCCTTGATTCATCTTCGATCTCCGTTTTGATGCATTTTCTCTCCATTTCTTCTCTTGCTGCAACCGTCGCCATCAATCACGCCAAATTTCGTCCCTCCATTGATCTTTATGAGTTTAGAGTTTCGGTCCTTTGTTTTACCATGGAGGGCTCTGTAGCGGAGGATATCGAAGGTCCTGAGTCATGGAAGGTCGCAGCGTTGGATGAGGCCGTGAGACAATTGAATTCCAAATCCTTGGAGCATTTTGTTGTCGGTGCTGCTCTCTCAGATCGTTGGATTGCTGGTGAAATGTCCGAGGATTCTATCACTCAG

Protein sequence

SSSITPNFVLDSSSISVLMHFLSISSLAATVAINHAKFRPSIDLYEFRVSVLCFTMEGSVAEDIEGPESWKVAALDEAVRQLNSKSLEHFVVGAALSDRWIAGEMSEDSITQ
Homology
[Close]
BLAST of CcUC05G103960 vs. NCBI nr
Match: KGN52196.1 (hypothetical protein Csa_008631 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-12
Identity = 48/73 (65.75%), Postives = 50/73 (68.49%), Query Frame = 0 

Query: 19 MHFLSISSLAATVAINHAKFRPSID-------LYEFRVSVLCFTMEGSVAEDIEGPESWK 78
          MHFLSISSLA  V        PSI        + EFRVSVLCFT EGS AE+IEGPESWK
Sbjct: 1  MHFLSISSLAVIVIAPENLPSPSIAPNSVPRLILEFRVSVLCFTTEGSAAENIEGPESWK 60

Query: 79 VAALDEAVRQLNS 85
          VA LDEAVRQ NS
Sbjct: 61 VAELDEAVRQRNS 73

[Close]
BLAST of CcUC05G103960 vs. NCBI nr
Match: KAA0034658.1 (R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H domain-containing protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 6.9e-08
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 46  EFRVSVLCFTMEGSVAEDIEGPESWKVAALDEAVRQLNS 85
           EFRVSV CFT+EGS AEDIE PESWKVA  DEAVRQ NS
Sbjct: 651 EFRVSVFCFTVEGSAAEDIEDPESWKVAEFDEAVRQWNS 689

[Close]
BLAST of CcUC05G103960 vs. ExPASy TrEMBL
Match: A0A0A0KWM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615190 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.0e-12
Identity = 48/73 (65.75%), Postives = 50/73 (68.49%), Query Frame = 0 

Query: 19 MHFLSISSLAATVAINHAKFRPSID-------LYEFRVSVLCFTMEGSVAEDIEGPESWK 78
          MHFLSISSLA  V        PSI        + EFRVSVLCFT EGS AE+IEGPESWK
Sbjct: 1  MHFLSISSLAVIVIAPENLPSPSIAPNSVPRLILEFRVSVLCFTTEGSAAENIEGPESWK 60

Query: 79 VAALDEAVRQLNS 85
          VA LDEAVRQ NS
Sbjct: 61 VAELDEAVRQRNS 73

[Close]
BLAST of CcUC05G103960 vs. ExPASy TrEMBL
Match: A0A5D3CFX4 (R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002020 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-08
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 46  EFRVSVLCFTMEGSVAEDIEGPESWKVAALDEAVRQLNS 85
           EFRVSV CFT+EGS AEDIE PESWKVA  DEAVRQ NS
Sbjct: 651 EFRVSVFCFTVEGSAAEDIEDPESWKVAEFDEAVRQWNS 689

The following BLAST results are available for this feature:
BLAST of CcUC05G103960 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52196.12.1e-1265.75hypothetical protein Csa_008631 [Cucumis sativus][more]
KAA0034658.16.9e-0882.05R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H ... [more]
BLAST of CcUC05G103960 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC05G103960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWM81.0e-1265.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615190 PE=4 SV=1[more]
A0A5D3CFX43.3e-0882.05R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of CcUC05G103960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G103960.1CcUC05G103960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding