CcUC05G103360 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G103360
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr05: 31134026 .. 31134415 (+)
RNA-Seq ExpressionCcUC05G103360
SyntenyCcUC05G103360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTACGACATGCTCTTCTTCTCTTCTTCCTTTTAAGTTTGGCTTCTTCTTCTATGGTTATGGCGACGTCAAGAGCCATGCTTGTCATAACACCTACTCCAACCACGTCTGTTGGAGCACCTACTCCCACAATTGATGCAAAACCTTCACCACCACAGTCATCTGAAGCTATGTTCGTTGCAAGATCTGACTCGTCAATTTCCATGCCTCCAAGTTTTGGTGACTTTGTTGCTTTTGAGGTTCCTAGTGAAATAGGAGCAAATCCACCAATGCCTAATTGGGTCATTCGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCCAGTGATCGTAGGAACAGTGAACCTCTTGTCTCAATTGTATGTTCAAACATGTCATGA

mRNA sequence

ATGGCTCTACGACATGCTCTTCTTCTCTTCTTCCTTTTAAGTTTGGCTTCTTCTTCTATGGTTATGGCGACGTCAAGAGCCATGCTTGTCATAACACCTACTCCAACCACGTCTGTTGGAGCACCTACTCCCACAATTGATGCAAAACCTTCACCACCACAGTCATCTGAAGCTATGTTCGTTGCAAGATCTGACTCGTCAATTTCCATGCCTCCAAGTTTTGGTGACTTTGTTGCTTTTGAGGTTCCTAGTGAAATAGGAGCAAATCCACCAATGCCTAATTGGGTCATTCGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCCAGTGATCGTAGGAACAGTGAACCTCTTGTCTCAATTGTATGTTCAAACATGTCATGA

Coding sequence (CDS)

ATGGCTCTACGACATGCTCTTCTTCTCTTCTTCCTTTTAAGTTTGGCTTCTTCTTCTATGGTTATGGCGACGTCAAGAGCCATGCTTGTCATAACACCTACTCCAACCACGTCTGTTGGAGCACCTACTCCCACAATTGATGCAAAACCTTCACCACCACAGTCATCTGAAGCTATGTTCGTTGCAAGATCTGACTCGTCAATTTCCATGCCTCCAAGTTTTGGTGACTTTGTTGCTTTTGAGGTTCCTAGTGAAATAGGAGCAAATCCACCAATGCCTAATTGGGTCATTCGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCCAGTGATCGTAGGAACAGTGAACCTCTTGTCTCAATTGTATGTTCAAACATGTCATGA

Protein sequence

MALRHALLLFFLLSLASSSMVMATSRAMLVITPTPTTSVGAPTPTIDAKPSPPQSSEAMFVARSDSSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS
Homology
BLAST of CcUC05G103360 vs. NCBI nr
Match: TYK09256.1 (hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 2.5e-38
Identity = 97/135 (71.85%), Postives = 104/135 (77.04%), Query Frame = 0

Query: 1   MALRHALLLFFL---LSLASSSMVMATSRAMLVITPTPTTSVGAPTPTIDAKP---SPPQ 60
           MAL  A LLFFL   L+LASSS  MATSRAML I PTPT S  APT  +DAKP   SPP 
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  SSEAMFVARSDSSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRYSAPSDR 120
           S   +      SS SMPPSFGDFVAFEVPSE+ ANPP P+W+IRSCKPKGRMRYSAPSDR
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

Query: 121 RNSEPLVSIVCSNMS 130
           RNSEPL+SIVCSNMS
Sbjct: 121 RNSEPLISIVCSNMS 135

BLAST of CcUC05G103360 vs. NCBI nr
Match: KAE8648853.1 (hypothetical protein Csa_008932 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 4.6e-24
Identity = 80/116 (68.97%), Postives = 87/116 (75.00%), Query Frame = 0

Query: 1   MALRHALLLFF---LLSLASSSMVMATSRAMLVITPTPTTSVGAPTPTIDAKPSPPQS-S 60
           MALRHA LLFF   +L+LASSS  MATSRAML I          PTPTIDAKPSPP + S
Sbjct: 1   MALRHAPLLFFFLLVLALASSSTTMATSRAMLFI---------EPTPTIDAKPSPPPTVS 60

Query: 61  EAMFVARSDSSI--SMPPSFGDFVAFEVPSEIG-ANPPMPNWVIRSCKPKGRMRYS 110
           EA  VA   SS+  SMPPSFGDFVAFEVPSE+  ANPPMP+W+IRSCKPKGRMR S
Sbjct: 61  EATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVSTANPPMPDWMIRSCKPKGRMRSS 107

BLAST of CcUC05G103360 vs. NCBI nr
Match: KAG6573847.1 (hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.6 bits (270), Expect = 4.0e-20
Identity = 69/122 (56.56%), Postives = 82/122 (67.21%), Query Frame = 0

Query: 12  LLSLASSSMVM----ATSRAMLVITPTPTTSVGAPTPTIDAKPSPPQSSEAMFVARSDSS 71
           +L++ SS + M    + S     + PTP+TS    T T D + S P + EA  V  S S+
Sbjct: 7   MLNVVSSDLAMISNSSPSTVSFPVIPTPSTS----TTTFDGE-STPSTYEATTVVGSGSA 66

Query: 72  ISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSN 130
           I M P+  DFVAFEVP+ + A PPM N VIRSCKPKGRMRYSAPSDRRNS PLVSIVCSN
Sbjct: 67  IFMSPTSNDFVAFEVPNGMDAKPPMSNRVIRSCKPKGRMRYSAPSDRRNSLPLVSIVCSN 123

BLAST of CcUC05G103360 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-05
Identity = 40/114 (35.09%), Postives = 58/114 (50.88%), Query Frame = 0

Query: 7   LLLFFLLSLASSSMVMATSRAMLVITPTPTTSVGAPTPTIDAKPSPPQSSEAMFVARSDS 66
           ++ F L+ ++S S ++ATSR ML                +D K SPPQ            
Sbjct: 11  IIFFLLIVISSPSTIIATSRHML---------------ALDTKESPPQ-----------P 70

Query: 67  SISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRYSAPSDRRNSEPL 121
            +  PP+  DF    +P+   A PPMP   +RSCKPKG +R+S+PS  RN+ P+
Sbjct: 71  PMDKPPTSNDFDTLSLPNGTKAMPPMPESAVRSCKPKGPVRWSSPSPIRNNLPI 98

BLAST of CcUC05G103360 vs. NCBI nr
Match: KAE8649709.1 (hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothetical protein Csa_012458, partial [Cucumis sativus] >KGN55007.2 hypothetical protein Csa_012551, partial [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 6.9e-04
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 0

Query: 1   MALRHALL---LFFLLSLASSSMVMATSRAMLVITPTPTTSVGAPTPTIDAKPSPPQSSE 60
           MA +H ++    FFL++++S S +MAT+R ML +   PT        T++          
Sbjct: 1   MAFQHDVVFFTFFFLIAMSSPSKIMATTRGMLDLAQPPT--------TLEESTIRNFRES 60

Query: 61  AMFVARSDSSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRYSAPSDRRN 117
              V  S SSIS+PP+  +F++F+ P+ +GA  P+P  ++  CKPKG + +SAP+ + N
Sbjct: 61  IAEVPESSSSISLPPTSDEFISFD-PNGMGARAPLPASLL-DCKPKGPIAWSAPNPKHN 109

BLAST of CcUC05G103360 vs. ExPASy TrEMBL
Match: A0A5D3CFX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002500 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 97/135 (71.85%), Postives = 104/135 (77.04%), Query Frame = 0

Query: 1   MALRHALLLFFL---LSLASSSMVMATSRAMLVITPTPTTSVGAPTPTIDAKP---SPPQ 60
           MAL  A LLFFL   L+LASSS  MATSRAML I PTPT S  APT  +DAKP   SPP 
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  SSEAMFVARSDSSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRYSAPSDR 120
           S   +      SS SMPPSFGDFVAFEVPSE+ ANPP P+W+IRSCKPKGRMRYSAPSDR
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

Query: 121 RNSEPLVSIVCSNMS 130
           RNSEPL+SIVCSNMS
Sbjct: 121 RNSEPLISIVCSNMS 135

BLAST of CcUC05G103360 vs. ExPASy TrEMBL
Match: A0A0A0KRI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622650 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.0e-32
Identity = 85/112 (75.89%), Postives = 90/112 (80.36%), Query Frame = 0

Query: 22  MATSRAMLVITPTPTTSVGAPTPTIDAKPSPPQS-SEAMFVARSDSSI--SMPPSFGDFV 81
           MATSRAML I          PTPTIDAKPSPP + SEA  VA   SS+  SMPPSFGDFV
Sbjct: 1   MATSRAMLFI---------EPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFV 60

Query: 82  AFEVPSEIG-ANPPMPNWVIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 130
           AFEVPSE+  ANPPMP+W+IRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS
Sbjct: 61  AFEVPSEVSTANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK09256.12.5e-3871.85hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa][more]
KAE8648853.14.6e-2468.97hypothetical protein Csa_008932 [Cucumis sativus][more]
KAG6573847.14.0e-2056.56hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595583.12.2e-0535.09hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8649709.16.9e-0434.45hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothe... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CFX31.2e-3871.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KRI35.0e-3275.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622650 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G103360.1CcUC05G103360.1mRNA