CcUC05G102520 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G102520
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr05: 30446679 .. 30448050 (-)
RNA-Seq ExpressionCcUC05G102520
SyntenyCcUC05G102520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTATTTTCCATATTCCAACTTGGACAAGGACTGGTAGAAGAGGGAAAAGGCAGAAGAGAAGACCAATATGGATATGCTACATACAAATGCTTTACGTAGCCTTAAAAGTGACCCTCTGGCTTCAGAGGTTGAAGGGACTGAAAGCTAGAAAGAAAAGCACAATGGAAGAAAGAATATTAAAAAGGCTTCTGCTGAAAAGGAAAAGTGGCCTCGTCTCGTCTGCTGTGTTGCTATTTTGCAGGTTGTCTACTCGATTGCATTTAAGCTTGCACTTTTCTTTAACCTTCATACTGAACTGCCATACAAAGCCATACGACTTTTCCTTCATTGGGAGACTTTTCCCTCTGACCTTTCTCTCCAAGTAATCTGAGAAGACCATTGTTACGAAGTCAGCAGCTGGGTTTCATCCTCTATCTCTCCATTTCGATATGCCATTTCCACTCTCCATGGAAGCTCGGCTCCTTCTGTTAATGGCGGTTATCACTCTTCTGGTCTCTGGTGATAACAAAGCGAGAATGGGGGTTGCACTCGTCGACCATCATCCAATGTCAAACATGCAGGAGAAGCACCGGAAGCATCTGCCGTCGCCGTCGTTGCCCCCGCCTTGGAGTCACTCGTTTAATGCTCTCTTTGCAAGCAAGAGGAAGGTTCCAAACACTTGGGATCCGCTCCACAATCGTTGAAGCTCTCTCTGGTTGTTTGAATCCTTAGAGAGGAATGTGGTTGCATCTGATCTGATTAGCTTCTGAATTTTGGTCAAATGATGGTGTTGACTCTATTGGTAGACGTGGCCACGTGGACTTCTGGTTTGCTTGCCTTCCTTTAGCTCGTGAATTCGGACAACTACACGCTCTCAGTCTTTTCCTGGGTGCAAACTTTATGGGGAAATGCATCCATCCCTTCTTTTCTTTTTCACAATCATTTTAGTAAAATCCAATTAAATATAAACTCTTCAACAGATATCTTCTCTATTTTTCAAGTTCTCCAAAATCTATGTGTGGTGTGGCCATAGTTTTTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTAAGCCTCAATAATGTTTAAAATAGTACGCTAATTTAATTAGGATCATCATGTGCAAACTACGTATGATTCTTATTTATTCTTATCGATTACTAATGTAGTGTTTGTATAGTTGTATATCTAGCTATATATTTTTCCTAGTCATTACTCATTACTCCTTGCATTTTTGGTTAGTGTCTGTCTGTCGGATATGAAGATTTTGTTTGGTTTTTCTTAGAATGTGGGAATGCTTATTTTTGTCTCAACTTTTTTACGTTGCTTGGGTTTTATATTGTTTTTATTTATTATAGCTATTTAGTATTGTGTAA

mRNA sequence

ATGGGGACTGGTAGAAGAGGGAAAAGGCAGAAGAGAAGACCAATATGGATATGCTACATACAAATGCTTTACGTAGCCTTAAAAGTGACCCTCTGGCTTCAGAGGTTGAAGGGACTGAAAGCTAGAAAGAAAAGCACAATGGAAGAAAGAATATTAAAAAGGCTTCTGCTGAAAAGGAAAAGTGGCCTCGTCTCGTCTGCTGTTGTCTACTCGATTGCATTTAAGCTTGCACTTTTCTTTAACCTTCATACTGAACTGCCATACAAAGCCATACGACTTTTCCTTCATTGGGAGACTTTTCCCTCTGACCTTTCTCTCCAAACCATTGTTACGAAGTCAGCAGCTGGGTTTCATCCTCTATCTCTCCATTTCGATATGCCATTTCCACTCTCCATGGAAGCTCGGCTCCTTCTGTTAATGGCGGTTATCACTCTTCTGGTCTCTGGTGATAACAAAGCGAGAATGGGGGTTGCACTCGTCGACCATCATCCAATGTCAAACATGCAGGAGAAGCACCGGAAGCATCTGCCGTCGCCGTCGTTGCCCCCGCCTTGGAGTCACTCGTTTAATGCTCTCTTTGCAAGCAAGAGGAAGCTATTTAGTATTGTGTAA

Coding sequence (CDS)

ATGGGGACTGGTAGAAGAGGGAAAAGGCAGAAGAGAAGACCAATATGGATATGCTACATACAAATGCTTTACGTAGCCTTAAAAGTGACCCTCTGGCTTCAGAGGTTGAAGGGACTGAAAGCTAGAAAGAAAAGCACAATGGAAGAAAGAATATTAAAAAGGCTTCTGCTGAAAAGGAAAAGTGGCCTCGTCTCGTCTGCTGTTGTCTACTCGATTGCATTTAAGCTTGCACTTTTCTTTAACCTTCATACTGAACTGCCATACAAAGCCATACGACTTTTCCTTCATTGGGAGACTTTTCCCTCTGACCTTTCTCTCCAAACCATTGTTACGAAGTCAGCAGCTGGGTTTCATCCTCTATCTCTCCATTTCGATATGCCATTTCCACTCTCCATGGAAGCTCGGCTCCTTCTGTTAATGGCGGTTATCACTCTTCTGGTCTCTGGTGATAACAAAGCGAGAATGGGGGTTGCACTCGTCGACCATCATCCAATGTCAAACATGCAGGAGAAGCACCGGAAGCATCTGCCGTCGCCGTCGTTGCCCCCGCCTTGGAGTCACTCGTTTAATGCTCTCTTTGCAAGCAAGAGGAAGCTATTTAGTATTGTGTAA

Protein sequence

MGTGRRGKRQKRRPIWICYIQMLYVALKVTLWLQRLKGLKARKKSTMEERILKRLLLKRKSGLVSSAVVYSIAFKLALFFNLHTELPYKAIRLFLHWETFPSDLSLQTIVTKSAAGFHPLSLHFDMPFPLSMEARLLLLMAVITLLVSGDNKARMGVALVDHHPMSNMQEKHRKHLPSPSLPPPWSHSFNALFASKRKLFSIV
Homology
[Close]
BLAST of CcUC05G102520 vs. NCBI nr
Match: KAA0064426.1 (hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK20161.1 hypothetical protein E5676_scaffold134G002930 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 3.9e-17
Identity = 56/69 (81.16%), Postives = 58/69 (84.06%), Query Frame = 0 

Query: 132 MEARLLLLMAVITLLVSGDNKARMG--VALVDHHPMSNMQEKHRKHLPSPSLPPPWSHSF 191
           MEARLLLLMAVITLLVSG+NKA MG  VALVD HP+SNMQEKHRKHL   S PP  SH F
Sbjct: 1   MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 192 NALFASKRK 199
           NALFASKRK
Sbjct: 61  NALFASKRK 69

[Close]
BLAST of CcUC05G102520 vs. NCBI nr
Match: KAE8649873.1 (hypothetical protein Csa_012848, partial [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-13
Identity = 45/60 (75.00%), Postives = 48/60 (80.00%), Query Frame = 0 

Query: 143 ITLLVSGDNKARMG---VALVDHHPMSNMQEKHRKHLPSPSLPPPWSHSFNALFASKRKL 200
           ITLLVSGDNKA MG   VA +D HP+SNMQEKHRKHL   S PPP SH FNALFASKRK+
Sbjct: 1   ITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHLFNALFASKRKV 60

[Close]
BLAST of CcUC05G102520 vs. NCBI nr
Match: KAG6591407.1 (Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-04
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 36  LKGLKARKKSTMEERILKRLLLKRKSGLVSSAVV 70
           LKGLKARKKSTMEE ILKRL LKRKSGLVSSAVV
Sbjct: 482 LKGLKARKKSTMEEGILKRLALKRKSGLVSSAVV 515

[Close]
BLAST of CcUC05G102520 vs. ExPASy TrEMBL
Match: A0A0A0KZW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 0 

Query: 132 MEARLLLLMAVITLLVSGDNKARMG---VALVDHHPMSNMQEKHRKHLPSPSLPPPWSHS 191
           MEARLLLLMAVITLLVSGDNKA MG   VA +D HP+SNMQEKHRKHL   S PPP SH 
Sbjct: 1   MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60

Query: 192 FNALFASKRKL 200
           FNALFASKRK+
Sbjct: 61  FNALFASKRKV 71

[Close]
BLAST of CcUC05G102520 vs. ExPASy TrEMBL
Match: A0A5D3D9C5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002930 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-17
Identity = 56/69 (81.16%), Postives = 58/69 (84.06%), Query Frame = 0 

Query: 132 MEARLLLLMAVITLLVSGDNKARMG--VALVDHHPMSNMQEKHRKHLPSPSLPPPWSHSF 191
           MEARLLLLMAVITLLVSG+NKA MG  VALVD HP+SNMQEKHRKHL   S PP  SH F
Sbjct: 1   MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 192 NALFASKRK 199
           NALFASKRK
Sbjct: 61  NALFASKRK 69

The following BLAST results are available for this feature:
BLAST of CcUC05G102520 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0064426.13.9e-1781.16hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK201... [more]
KAE8649873.12.6e-1375.00hypothetical protein Csa_012848, partial [Cucumis sativus][more]
KAG6591407.13.7e-0494.12Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CcUC05G102520 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC05G102520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZW11.3e-1878.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1[more]
A0A5D3D9C51.9e-1781.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CcUC05G102520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G102520.1CcUC05G102520.1mRNA